data_5B7U # _model_server_result.job_id IjpX7okAOh5nhfP4oFn3MQ _model_server_result.datetime_utc '2025-03-04 08:45:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5b7u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 5B7U # _exptl.entry_id 5B7U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 121.158 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CYSTEINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5B7U _cell.length_a 78.488 _cell.length_b 62.789 _cell.length_c 171.317 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5B7U _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C HIS 235 A HIS 215 1_555 A N LLP 236 A LLP 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.316 ? covale ? covale2 A C LLP 236 A LLP 216 1_555 A N GLY 237 A GLY 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.31 ? covale ? covale3 A C HIS 375 A HIS 355 1_555 A N CSS 376 A CSS 356 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? covale ? covale4 A C CSS 376 A CSS 356 1_555 A N ALA 377 A ALA 357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? covale ? covale5 B C HIS 235 B HIS 215 1_555 B N LLP 236 B LLP 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? covale ? covale6 B C LLP 236 B LLP 216 1_555 B N GLY 237 B GLY 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.303 ? covale ? covale7 B C HIS 375 B HIS 355 1_555 B N CSS 376 B CSS 356 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale8 B C CSS 376 B CSS 356 1_555 B N ALA 377 B ALA 357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? # _chem_comp.formula 'C3 H7 N O2 S' _chem_comp.formula_weight 121.158 _chem_comp.id CYS _chem_comp.mon_nstd_flag y _chem_comp.name CYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA CYS sing 84 n n N H CYS sing 85 n n N H2 CYS sing 86 n n CA C CYS sing 87 n n CA CB CYS sing 88 n n CA HA CYS sing 89 n n C O CYS doub 90 n n C OXT CYS sing 91 n n CB SG CYS sing 92 n n CB HB2 CYS sing 93 n n CB HB3 CYS sing 94 n n SG HG CYS sing 95 n n OXT HXT CYS sing 96 n n # _atom_sites.entry_id 5B7U _atom_sites.fract_transf_matrix[1][1] 0.012741 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015926 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005837 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CYS A 1 401 1 CYS CYS . D 3 IPA A 1 402 1 IPA IPA . E 4 HOH A 1 501 225 HOH HOH . E 4 HOH A 2 502 217 HOH HOH . E 4 HOH A 3 503 242 HOH HOH . E 4 HOH A 4 504 158 HOH HOH . E 4 HOH A 5 505 80 HOH HOH . E 4 HOH A 6 506 241 HOH HOH . E 4 HOH A 7 507 27 HOH HOH . E 4 HOH A 8 508 236 HOH HOH . E 4 HOH A 9 509 227 HOH HOH . E 4 HOH A 10 510 157 HOH HOH . E 4 HOH A 11 511 197 HOH HOH . E 4 HOH A 12 512 238 HOH HOH . E 4 HOH A 13 513 79 HOH HOH . E 4 HOH A 14 514 71 HOH HOH . E 4 HOH A 15 515 140 HOH HOH . E 4 HOH A 16 516 184 HOH HOH . E 4 HOH A 17 517 17 HOH HOH . E 4 HOH A 18 518 175 HOH HOH . E 4 HOH A 19 519 120 HOH HOH . E 4 HOH A 20 520 243 HOH HOH . E 4 HOH A 21 521 179 HOH HOH . E 4 HOH A 22 522 84 HOH HOH . E 4 HOH A 23 523 147 HOH HOH . E 4 HOH A 24 524 234 HOH HOH . E 4 HOH A 25 525 148 HOH HOH . E 4 HOH A 26 526 42 HOH HOH . E 4 HOH A 27 527 119 HOH HOH . E 4 HOH A 28 528 28 HOH HOH . E 4 HOH A 29 529 40 HOH HOH . E 4 HOH A 30 530 155 HOH HOH . E 4 HOH A 31 531 193 HOH HOH . E 4 HOH A 32 532 166 HOH HOH . E 4 HOH A 33 533 185 HOH HOH . E 4 HOH A 34 534 226 HOH HOH . E 4 HOH A 35 535 1 HOH HOH . E 4 HOH A 36 536 190 HOH HOH . E 4 HOH A 37 537 181 HOH HOH . E 4 HOH A 38 538 44 HOH HOH . E 4 HOH A 39 539 85 HOH HOH . E 4 HOH A 40 540 76 HOH HOH . E 4 HOH A 41 541 88 HOH HOH . E 4 HOH A 42 542 16 HOH HOH . E 4 HOH A 43 543 127 HOH HOH . E 4 HOH A 44 544 74 HOH HOH . E 4 HOH A 45 545 19 HOH HOH . E 4 HOH A 46 546 172 HOH HOH . E 4 HOH A 47 547 240 HOH HOH . E 4 HOH A 48 548 235 HOH HOH . E 4 HOH A 49 549 213 HOH HOH . E 4 HOH A 50 550 51 HOH HOH . E 4 HOH A 51 551 52 HOH HOH . E 4 HOH A 52 552 129 HOH HOH . E 4 HOH A 53 553 186 HOH HOH . E 4 HOH A 54 554 138 HOH HOH . E 4 HOH A 55 555 177 HOH HOH . E 4 HOH A 56 556 187 HOH HOH . E 4 HOH A 57 557 141 HOH HOH . E 4 HOH A 58 558 191 HOH HOH . E 4 HOH A 59 559 49 HOH HOH . E 4 HOH A 60 560 160 HOH HOH . E 4 HOH A 61 561 128 HOH HOH . E 4 HOH A 62 562 25 HOH HOH . E 4 HOH A 63 563 65 HOH HOH . E 4 HOH A 64 564 114 HOH HOH . E 4 HOH A 65 565 132 HOH HOH . E 4 HOH A 66 566 72 HOH HOH . E 4 HOH A 67 567 218 HOH HOH . E 4 HOH A 68 568 183 HOH HOH . E 4 HOH A 69 569 18 HOH HOH . E 4 HOH A 70 570 216 HOH HOH . E 4 HOH A 71 571 29 HOH HOH . E 4 HOH A 72 572 156 HOH HOH . E 4 HOH A 73 573 7 HOH HOH . E 4 HOH A 74 574 168 HOH HOH . E 4 HOH A 75 575 78 HOH HOH . E 4 HOH A 76 576 145 HOH HOH . E 4 HOH A 77 577 15 HOH HOH . E 4 HOH A 78 578 162 HOH HOH . E 4 HOH A 79 579 194 HOH HOH . E 4 HOH A 80 580 170 HOH HOH . E 4 HOH A 81 581 124 HOH HOH . E 4 HOH A 82 582 173 HOH HOH . E 4 HOH A 83 583 136 HOH HOH . E 4 HOH A 84 584 26 HOH HOH . E 4 HOH A 85 585 139 HOH HOH . E 4 HOH A 86 586 90 HOH HOH . E 4 HOH A 87 587 122 HOH HOH . E 4 HOH A 88 588 47 HOH HOH . E 4 HOH A 89 589 135 HOH HOH . E 4 HOH A 90 590 182 HOH HOH . E 4 HOH A 91 591 232 HOH HOH . E 4 HOH A 92 592 178 HOH HOH . E 4 HOH A 93 593 149 HOH HOH . E 4 HOH A 94 594 115 HOH HOH . E 4 HOH A 95 595 192 HOH HOH . E 4 HOH A 96 596 75 HOH HOH . E 4 HOH A 97 597 10 HOH HOH . E 4 HOH A 98 598 161 HOH HOH . E 4 HOH A 99 599 9 HOH HOH . E 4 HOH A 100 600 45 HOH HOH . E 4 HOH A 101 601 239 HOH HOH . E 4 HOH A 102 602 130 HOH HOH . E 4 HOH A 103 603 43 HOH HOH . E 4 HOH A 104 604 133 HOH HOH . E 4 HOH A 105 605 221 HOH HOH . E 4 HOH A 106 606 87 HOH HOH . E 4 HOH A 107 607 163 HOH HOH . E 4 HOH A 108 608 50 HOH HOH . E 4 HOH A 109 609 167 HOH HOH . E 4 HOH A 110 610 164 HOH HOH . E 4 HOH A 111 611 6 HOH HOH . E 4 HOH A 112 612 8 HOH HOH . E 4 HOH A 113 613 165 HOH HOH . E 4 HOH A 114 614 212 HOH HOH . E 4 HOH A 115 615 237 HOH HOH . E 4 HOH A 116 616 73 HOH HOH . E 4 HOH A 117 617 48 HOH HOH . E 4 HOH A 118 618 231 HOH HOH . E 4 HOH A 119 619 159 HOH HOH . E 4 HOH A 120 620 121 HOH HOH . E 4 HOH A 121 621 70 HOH HOH . E 4 HOH A 122 622 144 HOH HOH . E 4 HOH A 123 623 81 HOH HOH . E 4 HOH A 124 624 180 HOH HOH . E 4 HOH A 125 625 189 HOH HOH . E 4 HOH A 126 626 215 HOH HOH . E 4 HOH A 127 627 134 HOH HOH . E 4 HOH A 128 628 174 HOH HOH . E 4 HOH A 129 629 131 HOH HOH . E 4 HOH A 130 630 86 HOH HOH . E 4 HOH A 131 631 233 HOH HOH . E 4 HOH A 132 632 188 HOH HOH . E 4 HOH A 133 633 196 HOH HOH . E 4 HOH A 134 634 143 HOH HOH . E 4 HOH A 135 635 228 HOH HOH . E 4 HOH A 136 636 4 HOH HOH . E 4 HOH A 137 637 41 HOH HOH . E 4 HOH A 138 638 195 HOH HOH . E 4 HOH A 139 639 171 HOH HOH . E 4 HOH A 140 640 244 HOH HOH . E 4 HOH A 141 641 142 HOH HOH . E 4 HOH A 142 642 199 HOH HOH . E 4 HOH A 143 643 126 HOH HOH . E 4 HOH A 144 644 247 HOH HOH . E 4 HOH A 145 645 82 HOH HOH . E 4 HOH A 146 646 123 HOH HOH . E 4 HOH A 147 647 77 HOH HOH . E 4 HOH A 148 648 245 HOH HOH . E 4 HOH A 149 649 224 HOH HOH . E 4 HOH A 150 650 91 HOH HOH . E 4 HOH A 151 651 169 HOH HOH . E 4 HOH A 152 652 219 HOH HOH . E 4 HOH A 153 653 214 HOH HOH . E 4 HOH A 154 654 89 HOH HOH . E 4 HOH A 155 655 259 HOH HOH . E 4 HOH A 156 656 211 HOH HOH . E 4 HOH A 157 657 146 HOH HOH . E 4 HOH A 158 658 230 HOH HOH . E 4 HOH A 159 659 46 HOH HOH . F 4 HOH B 1 401 62 HOH HOH . F 4 HOH B 2 402 93 HOH HOH . F 4 HOH B 3 403 250 HOH HOH . F 4 HOH B 4 404 229 HOH HOH . F 4 HOH B 5 405 13 HOH HOH . F 4 HOH B 6 406 30 HOH HOH . F 4 HOH B 7 407 251 HOH HOH . F 4 HOH B 8 408 33 HOH HOH . F 4 HOH B 9 409 253 HOH HOH . F 4 HOH B 10 410 54 HOH HOH . F 4 HOH B 11 411 102 HOH HOH . F 4 HOH B 12 412 150 HOH HOH . F 4 HOH B 13 413 125 HOH HOH . F 4 HOH B 14 414 151 HOH HOH . F 4 HOH B 15 415 20 HOH HOH . F 4 HOH B 16 416 205 HOH HOH . F 4 HOH B 17 417 255 HOH HOH . F 4 HOH B 18 418 5 HOH HOH . F 4 HOH B 19 419 198 HOH HOH . F 4 HOH B 20 420 103 HOH HOH . F 4 HOH B 21 421 53 HOH HOH . F 4 HOH B 22 422 209 HOH HOH . F 4 HOH B 23 423 257 HOH HOH . F 4 HOH B 24 424 97 HOH HOH . F 4 HOH B 25 425 100 HOH HOH . F 4 HOH B 26 426 113 HOH HOH . F 4 HOH B 27 427 106 HOH HOH . F 4 HOH B 28 428 14 HOH HOH . F 4 HOH B 29 429 206 HOH HOH . F 4 HOH B 30 430 12 HOH HOH . F 4 HOH B 31 431 258 HOH HOH . F 4 HOH B 32 432 208 HOH HOH . F 4 HOH B 33 433 204 HOH HOH . F 4 HOH B 34 434 94 HOH HOH . F 4 HOH B 35 435 117 HOH HOH . F 4 HOH B 36 436 101 HOH HOH . F 4 HOH B 37 437 256 HOH HOH . F 4 HOH B 38 438 203 HOH HOH . F 4 HOH B 39 439 98 HOH HOH . F 4 HOH B 40 440 63 HOH HOH . F 4 HOH B 41 441 105 HOH HOH . F 4 HOH B 42 442 56 HOH HOH . F 4 HOH B 43 443 59 HOH HOH . F 4 HOH B 44 444 11 HOH HOH . F 4 HOH B 45 445 31 HOH HOH . F 4 HOH B 46 446 108 HOH HOH . F 4 HOH B 47 447 104 HOH HOH . F 4 HOH B 48 448 58 HOH HOH . F 4 HOH B 49 449 95 HOH HOH . F 4 HOH B 50 450 3 HOH HOH . F 4 HOH B 51 451 262 HOH HOH . F 4 HOH B 52 452 24 HOH HOH . F 4 HOH B 53 453 21 HOH HOH . F 4 HOH B 54 454 154 HOH HOH . F 4 HOH B 55 455 96 HOH HOH . F 4 HOH B 56 456 67 HOH HOH . F 4 HOH B 57 457 66 HOH HOH . F 4 HOH B 58 458 64 HOH HOH . F 4 HOH B 59 459 22 HOH HOH . F 4 HOH B 60 460 109 HOH HOH . F 4 HOH B 61 461 107 HOH HOH . F 4 HOH B 62 462 37 HOH HOH . F 4 HOH B 63 463 200 HOH HOH . F 4 HOH B 64 464 210 HOH HOH . F 4 HOH B 65 465 61 HOH HOH . F 4 HOH B 66 466 176 HOH HOH . F 4 HOH B 67 467 57 HOH HOH . F 4 HOH B 68 468 23 HOH HOH . F 4 HOH B 69 469 202 HOH HOH . F 4 HOH B 70 470 252 HOH HOH . F 4 HOH B 71 471 92 HOH HOH . F 4 HOH B 72 472 153 HOH HOH . F 4 HOH B 73 473 38 HOH HOH . F 4 HOH B 74 474 32 HOH HOH . F 4 HOH B 75 475 249 HOH HOH . F 4 HOH B 76 476 260 HOH HOH . F 4 HOH B 77 477 248 HOH HOH . F 4 HOH B 78 478 110 HOH HOH . F 4 HOH B 79 479 2 HOH HOH . F 4 HOH B 80 480 55 HOH HOH . F 4 HOH B 81 481 99 HOH HOH . F 4 HOH B 82 482 118 HOH HOH . F 4 HOH B 83 483 69 HOH HOH . F 4 HOH B 84 484 116 HOH HOH . F 4 HOH B 85 485 60 HOH HOH . F 4 HOH B 86 486 246 HOH HOH . F 4 HOH B 87 487 68 HOH HOH . F 4 HOH B 88 488 152 HOH HOH . F 4 HOH B 89 489 112 HOH HOH . F 4 HOH B 90 490 201 HOH HOH . F 4 HOH B 91 491 207 HOH HOH . F 4 HOH B 92 492 36 HOH HOH . F 4 HOH B 93 493 34 HOH HOH . F 4 HOH B 94 494 222 HOH HOH . F 4 HOH B 95 495 111 HOH HOH . F 4 HOH B 96 496 220 HOH HOH . F 4 HOH B 97 497 254 HOH HOH . F 4 HOH B 98 498 263 HOH HOH . F 4 HOH B 99 499 223 HOH HOH . F 4 HOH B 100 500 261 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N CYS . . . C 2 4.529 10.066 24.208 1 44.92 ? N CYS 401 A 1 HETATM 2 C CA CYS . . . C 2 5.732 9.217 24.112 1 47.73 ? CA CYS 401 A 1 HETATM 3 C C CYS . . . C 2 6.842 9.932 23.376 1 45.27 ? C CYS 401 A 1 HETATM 4 O O CYS . . . C 2 6.651 10.448 22.225 1 36.65 ? O CYS 401 A 1 HETATM 5 C CB CYS . . . C 2 5.486 7.904 23.373 1 58.29 ? CB CYS 401 A 1 HETATM 6 S SG CYS . . . C 2 7.048 7.352 22.631 1 58.81 ? SG CYS 401 A 1 HETATM 7 O OXT CYS . . . C 2 7.939 9.93 23.98 1 34.41 ? OXT CYS 401 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 7 #