data_5B87
#
_model_server_result.job_id            uSBPG-BIDIpGgHaFSaJLzA 
_model_server_result.datetime_utc      '2025-01-02 19:10:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5b87 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":401}' 
#
_entry.id    5B87 
#
_exptl.entry_id    5B87 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              89.093 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            ALANINE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5B87 
_cell.length_a            67.282 
_cell.length_b            93.809 
_cell.length_c            145.534 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5B87 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NZ LYS 236 A LYS 216 1_555 C C4A PLP . A PLP 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.467 ? 
covale ? covale2 A C HIS 375 A HIS 355 1_555 A N CSS 376 A CSS 356 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.31 ? 
covale ? covale3 A C CSS 376 A CSS 356 1_555 A N ALA 377 A ALA 357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? 
covale ? covale4 C C4A PLP . A PLP 400 1_555 D N ALA . A ALA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.511 ? 
covale ? covale5 B NZ LYS 236 B LYS 216 1_555 E C4A PLP . B PLP 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.513 ? 
covale ? covale6 B C HIS 375 B HIS 355 1_555 B N CSS 376 B CSS 356 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? 
covale ? covale7 B C CSS 376 B CSS 356 1_555 B N ALA 377 B ALA 357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.314 ? 
covale ? covale8 E C4A PLP . B PLP 400 1_555 F N ALA . B ALA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.532 ? 
#
_chem_comp.formula           'C3 H7 N O2' 
_chem_comp.formula_weight    89.093 
_chem_comp.id                ALA 
_chem_comp.mon_nstd_flag     y 
_chem_comp.name              ALANINE 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA ALA sing 1 n n 
N H ALA sing 2 n n 
N H2 ALA sing 3 n n 
CA C ALA sing 4 n n 
CA CB ALA sing 5 n n 
CA HA ALA sing 6 n n 
C O ALA doub 7 n n 
C OXT ALA sing 8 n n 
CB HB1 ALA sing 9 n n 
CB HB2 ALA sing 10 n n 
CB HB3 ALA sing 11 n n 
OXT HXT ALA sing 12 n n 
#
_atom_sites.entry_id                     5B87 
_atom_sites.fract_transf_matrix[1][1]    0.014863 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01066 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006871 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 PLP A 1 400 400 PLP PLP . 
D 3 ALA A 1 401 401 ALA ALA . 
E 2 PLP B 1 400 400 PLP PLP . 
F 3 ALA B 1 401 401 ALA ALA . 
G 4 HOH A 1 501 501 HOH HOH . 
G 4 HOH A 2 502 502 HOH HOH . 
G 4 HOH A 3 503 503 HOH HOH . 
G 4 HOH A 4 504 504 HOH HOH . 
G 4 HOH A 5 505 505 HOH HOH . 
G 4 HOH A 6 506 506 HOH HOH . 
G 4 HOH A 7 507 507 HOH HOH . 
G 4 HOH A 8 508 508 HOH HOH . 
G 4 HOH A 9 509 509 HOH HOH . 
G 4 HOH A 10 510 510 HOH HOH . 
G 4 HOH A 11 511 511 HOH HOH . 
G 4 HOH A 12 512 512 HOH HOH . 
G 4 HOH A 13 513 513 HOH HOH . 
G 4 HOH A 14 514 514 HOH HOH . 
G 4 HOH A 15 515 515 HOH HOH . 
G 4 HOH A 16 516 516 HOH HOH . 
G 4 HOH A 17 517 517 HOH HOH . 
G 4 HOH A 18 518 518 HOH HOH . 
G 4 HOH A 19 519 519 HOH HOH . 
G 4 HOH A 20 520 520 HOH HOH . 
G 4 HOH A 21 521 521 HOH HOH . 
G 4 HOH A 22 522 522 HOH HOH . 
G 4 HOH A 23 523 523 HOH HOH . 
G 4 HOH A 24 524 524 HOH HOH . 
G 4 HOH A 25 525 525 HOH HOH . 
G 4 HOH A 26 526 526 HOH HOH . 
G 4 HOH A 27 527 527 HOH HOH . 
G 4 HOH A 28 528 528 HOH HOH . 
G 4 HOH A 29 529 529 HOH HOH . 
G 4 HOH A 30 530 530 HOH HOH . 
G 4 HOH A 31 531 531 HOH HOH . 
G 4 HOH A 32 532 532 HOH HOH . 
G 4 HOH A 33 533 533 HOH HOH . 
G 4 HOH A 34 534 534 HOH HOH . 
G 4 HOH A 35 535 535 HOH HOH . 
G 4 HOH A 36 536 538 HOH HOH . 
G 4 HOH A 37 537 536 HOH HOH . 
G 4 HOH A 38 538 537 HOH HOH . 
G 4 HOH A 39 539 539 HOH HOH . 
G 4 HOH A 40 540 540 HOH HOH . 
G 4 HOH A 41 541 541 HOH HOH . 
G 4 HOH A 42 542 542 HOH HOH . 
G 4 HOH A 43 543 543 HOH HOH . 
G 4 HOH A 44 544 544 HOH HOH . 
G 4 HOH A 45 545 545 HOH HOH . 
G 4 HOH A 46 546 546 HOH HOH . 
G 4 HOH A 47 547 547 HOH HOH . 
G 4 HOH A 48 548 548 HOH HOH . 
G 4 HOH A 49 549 549 HOH HOH . 
G 4 HOH A 50 550 550 HOH HOH . 
G 4 HOH A 51 551 551 HOH HOH . 
G 4 HOH A 52 552 552 HOH HOH . 
G 4 HOH A 53 553 553 HOH HOH . 
G 4 HOH A 54 554 554 HOH HOH . 
G 4 HOH A 55 555 555 HOH HOH . 
G 4 HOH A 56 556 556 HOH HOH . 
G 4 HOH A 57 557 557 HOH HOH . 
G 4 HOH A 58 558 558 HOH HOH . 
G 4 HOH A 59 559 559 HOH HOH . 
G 4 HOH A 60 560 560 HOH HOH . 
G 4 HOH A 61 561 561 HOH HOH . 
G 4 HOH A 62 562 562 HOH HOH . 
G 4 HOH A 63 563 563 HOH HOH . 
G 4 HOH A 64 564 564 HOH HOH . 
G 4 HOH A 65 565 565 HOH HOH . 
G 4 HOH A 66 566 566 HOH HOH . 
G 4 HOH A 67 567 567 HOH HOH . 
G 4 HOH A 68 568 568 HOH HOH . 
H 4 HOH B 1 501 501 HOH HOH . 
H 4 HOH B 2 502 502 HOH HOH . 
H 4 HOH B 3 503 503 HOH HOH . 
H 4 HOH B 4 504 504 HOH HOH . 
H 4 HOH B 5 505 505 HOH HOH . 
H 4 HOH B 6 506 506 HOH HOH . 
H 4 HOH B 7 507 507 HOH HOH . 
H 4 HOH B 8 508 508 HOH HOH . 
H 4 HOH B 9 509 509 HOH HOH . 
H 4 HOH B 10 510 510 HOH HOH . 
H 4 HOH B 11 511 511 HOH HOH . 
H 4 HOH B 12 512 512 HOH HOH . 
H 4 HOH B 13 513 513 HOH HOH . 
H 4 HOH B 14 514 514 HOH HOH . 
H 4 HOH B 15 515 515 HOH HOH . 
H 4 HOH B 16 516 516 HOH HOH . 
H 4 HOH B 17 517 517 HOH HOH . 
H 4 HOH B 18 518 518 HOH HOH . 
H 4 HOH B 19 519 519 HOH HOH . 
H 4 HOH B 20 520 520 HOH HOH . 
H 4 HOH B 21 521 521 HOH HOH . 
H 4 HOH B 22 522 522 HOH HOH . 
H 4 HOH B 23 523 523 HOH HOH . 
H 4 HOH B 24 524 524 HOH HOH . 
H 4 HOH B 25 525 525 HOH HOH . 
H 4 HOH B 26 526 526 HOH HOH . 
H 4 HOH B 27 527 527 HOH HOH . 
H 4 HOH B 28 528 528 HOH HOH . 
H 4 HOH B 29 529 529 HOH HOH . 
H 4 HOH B 30 530 530 HOH HOH . 
H 4 HOH B 31 531 531 HOH HOH . 
H 4 HOH B 32 532 532 HOH HOH . 
H 4 HOH B 33 533 533 HOH HOH . 
H 4 HOH B 34 534 534 HOH HOH . 
H 4 HOH B 35 535 535 HOH HOH . 
H 4 HOH B 36 536 536 HOH HOH . 
H 4 HOH B 37 537 537 HOH HOH . 
H 4 HOH B 38 538 538 HOH HOH . 
H 4 HOH B 39 539 539 HOH HOH . 
H 4 HOH B 40 540 547 HOH HOH . 
H 4 HOH B 41 541 540 HOH HOH . 
H 4 HOH B 42 542 541 HOH HOH . 
H 4 HOH B 43 543 542 HOH HOH . 
H 4 HOH B 44 544 543 HOH HOH . 
H 4 HOH B 45 545 544 HOH HOH . 
H 4 HOH B 46 546 545 HOH HOH . 
H 4 HOH B 47 547 546 HOH HOH . 
H 4 HOH B 48 548 548 HOH HOH . 
H 4 HOH B 49 549 549 HOH HOH . 
H 4 HOH B 50 550 550 HOH HOH . 
H 4 HOH B 51 551 551 HOH HOH . 
H 4 HOH B 52 552 552 HOH HOH . 
H 4 HOH B 53 553 553 HOH HOH . 
H 4 HOH B 54 554 554 HOH HOH . 
H 4 HOH B 55 555 555 HOH HOH . 
H 4 HOH B 56 556 556 HOH HOH . 
H 4 HOH B 57 557 557 HOH HOH . 
H 4 HOH B 58 558 558 HOH HOH . 
H 4 HOH B 59 559 559 HOH HOH . 
H 4 HOH B 60 560 560 HOH HOH . 
H 4 HOH B 61 561 561 HOH HOH . 
H 4 HOH B 62 562 562 HOH HOH . 
H 4 HOH B 63 563 563 HOH HOH . 
H 4 HOH B 64 564 564 HOH HOH . 
H 4 HOH B 65 565 565 HOH HOH . 
H 4 HOH B 66 566 566 HOH HOH . 
H 4 HOH B 67 567 567 HOH HOH . 
H 4 HOH B 68 568 568 HOH HOH . 
H 4 HOH B 69 569 569 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N ALA . . . F 3 27.732 -0.372 16.649 1 51.79 ? N ALA 401 B 1 
HETATM 2 C CA ALA . . . F 3 26.43 -0.836 16.065 1 56.6 ? CA ALA 401 B 1 
HETATM 3 C C ALA . . . F 3 25.478 -1.608 17.008 1 58.54 ? C ALA 401 B 1 
HETATM 4 O O ALA . . . F 3 24.39 -1.969 16.654 1 51.94 ? O ALA 401 B 1 
HETATM 5 C CB ALA . . . F 3 26.552 -1.615 14.727 1 57.81 ? CB ALA 401 B 1 
HETATM 6 O OXT ALA . . . F 3 25.788 -1.82 18.024 1 63.52 ? OXT ALA 401 B 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           303 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           6 
#