data_5B8H # _model_server_result.job_id G3qdVwW5yOCE4IrxvRHmHA _model_server_result.datetime_utc '2024-10-11 03:13:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5b8h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 5B8H # _exptl.entry_id 5B8H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 219.235 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PANTOTHENOIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5B8H _cell.length_a 44.21 _cell.length_b 72.75 _cell.length_c 154.02 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5B8H _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LEU 177 A LEU 153 1_555 A N MSE 178 A MSE 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C MSE 178 A MSE 154 1_555 A N MSE 179 A MSE 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 A C MSE 179 A MSE 155 1_555 A N ARG 180 A ARG 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 B C LEU 177 B LEU 153 1_555 B N MSE 178 B MSE 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 B C MSE 178 B MSE 154 1_555 B N MSE 179 B MSE 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale6 B C MSE 179 B MSE 155 1_555 B N ARG 180 B ARG 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? # _chem_comp.formula 'C9 H17 N O5' _chem_comp.formula_weight 219.235 _chem_comp.id PAU _chem_comp.mon_nstd_flag . _chem_comp.name 'PANTOTHENOIC ACID' _chem_comp.type peptide-like _chem_comp.pdbx_synonyms N-[(2R)-2,4-DIHYDROXY-3,3-DIMETHYLBUTANOYL]-BETA-ALANINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 C2 PAU sing 298 n n O2 HO PAU sing 299 n n C1 C2 PAU sing 300 n n C1 C3 PAU sing 301 n n C1 C4 PAU sing 302 n n C1 C5 PAU sing 303 n n C2 H21 PAU sing 304 n n C2 H22 PAU sing 305 n n C3 H31 PAU sing 306 n n C3 H32 PAU sing 307 n n C3 H33 PAU sing 308 n n C4 H41 PAU sing 309 n n C4 H42 PAU sing 310 n n C4 H43 PAU sing 311 n n C5 O5' PAU sing 312 n n C5 C6 PAU sing 313 n n C5 H5 PAU sing 314 n n O5' H5' PAU sing 315 n n C6 O6' PAU doub 316 n n C6 N PAU sing 317 n n N C8 PAU sing 318 n n N H PAU sing 319 n n C8 C9 PAU sing 320 n n C8 H81 PAU sing 321 n n C8 H82 PAU sing 322 n n C9 C PAU sing 323 n n C9 H91 PAU sing 324 n n C9 H92 PAU sing 325 n n C OXT PAU sing 326 n n C O PAU doub 327 n n OXT HXT PAU sing 328 n n # _atom_sites.entry_id 5B8H _atom_sites.fract_transf_matrix[1][1] 0.022619 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013746 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006493 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 2PN A 1 301 300 2PN 2PN . D 3 PAU A 1 302 301 PAU PAU . E 4 EDO A 1 303 302 EDO EDO . F 5 AMP A 1 304 304 AMP AMP . G 2 2PN B 1 301 300 2PN 2PN . H 3 PAU B 1 302 301 PAU PAU . I 4 EDO B 1 303 303 EDO EDO . J 6 HOH A 1 401 72 HOH HOH . J 6 HOH A 2 402 160 HOH HOH . J 6 HOH A 3 403 156 HOH HOH . J 6 HOH A 4 404 96 HOH HOH . J 6 HOH A 5 405 138 HOH HOH . J 6 HOH A 6 406 140 HOH HOH . J 6 HOH A 7 407 168 HOH HOH . J 6 HOH A 8 408 134 HOH HOH . J 6 HOH A 9 409 38 HOH HOH . J 6 HOH A 10 410 24 HOH HOH . J 6 HOH A 11 411 124 HOH HOH . J 6 HOH A 12 412 104 HOH HOH . J 6 HOH A 13 413 90 HOH HOH . J 6 HOH A 14 414 28 HOH HOH . J 6 HOH A 15 415 137 HOH HOH . J 6 HOH A 16 416 159 HOH HOH . J 6 HOH A 17 417 117 HOH HOH . J 6 HOH A 18 418 18 HOH HOH . J 6 HOH A 19 419 17 HOH HOH . J 6 HOH A 20 420 190 HOH HOH . J 6 HOH A 21 421 145 HOH HOH . J 6 HOH A 22 422 143 HOH HOH . J 6 HOH A 23 423 211 HOH HOH . J 6 HOH A 24 424 56 HOH HOH . J 6 HOH A 25 425 16 HOH HOH . J 6 HOH A 26 426 155 HOH HOH . J 6 HOH A 27 427 97 HOH HOH . J 6 HOH A 28 428 54 HOH HOH . J 6 HOH A 29 429 119 HOH HOH . J 6 HOH A 30 430 109 HOH HOH . J 6 HOH A 31 431 37 HOH HOH . J 6 HOH A 32 432 2 HOH HOH . J 6 HOH A 33 433 172 HOH HOH . J 6 HOH A 34 434 83 HOH HOH . J 6 HOH A 35 435 139 HOH HOH . J 6 HOH A 36 436 110 HOH HOH . J 6 HOH A 37 437 212 HOH HOH . J 6 HOH A 38 438 57 HOH HOH . J 6 HOH A 39 439 48 HOH HOH . J 6 HOH A 40 440 86 HOH HOH . J 6 HOH A 41 441 133 HOH HOH . J 6 HOH A 42 442 157 HOH HOH . J 6 HOH A 43 443 210 HOH HOH . J 6 HOH A 44 444 176 HOH HOH . J 6 HOH A 45 445 229 HOH HOH . J 6 HOH A 46 446 173 HOH HOH . J 6 HOH A 47 447 158 HOH HOH . J 6 HOH A 48 448 177 HOH HOH . J 6 HOH A 49 449 101 HOH HOH . J 6 HOH A 50 450 4 HOH HOH . J 6 HOH A 51 451 6 HOH HOH . J 6 HOH A 52 452 7 HOH HOH . J 6 HOH A 53 453 9 HOH HOH . J 6 HOH A 54 454 10 HOH HOH . J 6 HOH A 55 455 11 HOH HOH . J 6 HOH A 56 456 14 HOH HOH . J 6 HOH A 57 457 19 HOH HOH . J 6 HOH A 58 458 23 HOH HOH . J 6 HOH A 59 459 25 HOH HOH . J 6 HOH A 60 460 26 HOH HOH . J 6 HOH A 61 461 27 HOH HOH . J 6 HOH A 62 462 31 HOH HOH . J 6 HOH A 63 463 35 HOH HOH . J 6 HOH A 64 464 36 HOH HOH . J 6 HOH A 65 465 39 HOH HOH . J 6 HOH A 66 466 40 HOH HOH . J 6 HOH A 67 467 43 HOH HOH . J 6 HOH A 68 468 44 HOH HOH . J 6 HOH A 69 469 46 HOH HOH . J 6 HOH A 70 470 47 HOH HOH . J 6 HOH A 71 471 51 HOH HOH . J 6 HOH A 72 472 52 HOH HOH . J 6 HOH A 73 473 55 HOH HOH . J 6 HOH A 74 474 58 HOH HOH . J 6 HOH A 75 475 61 HOH HOH . J 6 HOH A 76 476 62 HOH HOH . J 6 HOH A 77 477 66 HOH HOH . J 6 HOH A 78 478 68 HOH HOH . J 6 HOH A 79 479 70 HOH HOH . J 6 HOH A 80 480 73 HOH HOH . J 6 HOH A 81 481 75 HOH HOH . J 6 HOH A 82 482 77 HOH HOH . J 6 HOH A 83 483 81 HOH HOH . J 6 HOH A 84 484 85 HOH HOH . J 6 HOH A 85 485 87 HOH HOH . J 6 HOH A 86 486 88 HOH HOH . J 6 HOH A 87 487 94 HOH HOH . J 6 HOH A 88 488 98 HOH HOH . J 6 HOH A 89 489 102 HOH HOH . J 6 HOH A 90 490 105 HOH HOH . J 6 HOH A 91 491 113 HOH HOH . J 6 HOH A 92 492 115 HOH HOH . J 6 HOH A 93 493 118 HOH HOH . J 6 HOH A 94 494 120 HOH HOH . J 6 HOH A 95 495 127 HOH HOH . J 6 HOH A 96 496 128 HOH HOH . J 6 HOH A 97 497 136 HOH HOH . J 6 HOH A 98 498 142 HOH HOH . J 6 HOH A 99 499 146 HOH HOH . J 6 HOH A 100 500 148 HOH HOH . J 6 HOH A 101 501 149 HOH HOH . J 6 HOH A 102 502 152 HOH HOH . J 6 HOH A 103 503 154 HOH HOH . J 6 HOH A 104 504 161 HOH HOH . J 6 HOH A 105 505 162 HOH HOH . J 6 HOH A 106 506 163 HOH HOH . J 6 HOH A 107 507 164 HOH HOH . J 6 HOH A 108 508 165 HOH HOH . J 6 HOH A 109 509 166 HOH HOH . J 6 HOH A 110 510 167 HOH HOH . J 6 HOH A 111 511 169 HOH HOH . J 6 HOH A 112 512 170 HOH HOH . J 6 HOH A 113 513 171 HOH HOH . J 6 HOH A 114 514 174 HOH HOH . J 6 HOH A 115 515 175 HOH HOH . J 6 HOH A 116 516 178 HOH HOH . J 6 HOH A 117 517 179 HOH HOH . J 6 HOH A 118 518 182 HOH HOH . J 6 HOH A 119 519 187 HOH HOH . J 6 HOH A 120 520 189 HOH HOH . J 6 HOH A 121 521 198 HOH HOH . J 6 HOH A 122 522 199 HOH HOH . J 6 HOH A 123 523 200 HOH HOH . J 6 HOH A 124 524 202 HOH HOH . J 6 HOH A 125 525 203 HOH HOH . J 6 HOH A 126 526 204 HOH HOH . J 6 HOH A 127 527 205 HOH HOH . J 6 HOH A 128 528 206 HOH HOH . J 6 HOH A 129 529 207 HOH HOH . J 6 HOH A 130 530 208 HOH HOH . J 6 HOH A 131 531 209 HOH HOH . J 6 HOH A 132 532 213 HOH HOH . J 6 HOH A 133 533 226 HOH HOH . K 6 HOH B 1 401 216 HOH HOH . K 6 HOH B 2 402 64 HOH HOH . K 6 HOH B 3 403 223 HOH HOH . K 6 HOH B 4 404 91 HOH HOH . K 6 HOH B 5 405 71 HOH HOH . K 6 HOH B 6 406 225 HOH HOH . K 6 HOH B 7 407 125 HOH HOH . K 6 HOH B 8 408 82 HOH HOH . K 6 HOH B 9 409 49 HOH HOH . K 6 HOH B 10 410 69 HOH HOH . K 6 HOH B 11 411 95 HOH HOH . K 6 HOH B 12 412 196 HOH HOH . K 6 HOH B 13 413 214 HOH HOH . K 6 HOH B 14 414 78 HOH HOH . K 6 HOH B 15 415 114 HOH HOH . K 6 HOH B 16 416 112 HOH HOH . K 6 HOH B 17 417 150 HOH HOH . K 6 HOH B 18 418 80 HOH HOH . K 6 HOH B 19 419 60 HOH HOH . K 6 HOH B 20 420 126 HOH HOH . K 6 HOH B 21 421 144 HOH HOH . K 6 HOH B 22 422 20 HOH HOH . K 6 HOH B 23 423 84 HOH HOH . K 6 HOH B 24 424 8 HOH HOH . K 6 HOH B 25 425 224 HOH HOH . K 6 HOH B 26 426 188 HOH HOH . K 6 HOH B 27 427 228 HOH HOH . K 6 HOH B 28 428 42 HOH HOH . K 6 HOH B 29 429 76 HOH HOH . K 6 HOH B 30 430 33 HOH HOH . K 6 HOH B 31 431 129 HOH HOH . K 6 HOH B 32 432 147 HOH HOH . K 6 HOH B 33 433 186 HOH HOH . K 6 HOH B 34 434 181 HOH HOH . K 6 HOH B 35 435 185 HOH HOH . K 6 HOH B 36 436 1 HOH HOH . K 6 HOH B 37 437 3 HOH HOH . K 6 HOH B 38 438 5 HOH HOH . K 6 HOH B 39 439 12 HOH HOH . K 6 HOH B 40 440 13 HOH HOH . K 6 HOH B 41 441 15 HOH HOH . K 6 HOH B 42 442 21 HOH HOH . K 6 HOH B 43 443 22 HOH HOH . K 6 HOH B 44 444 29 HOH HOH . K 6 HOH B 45 445 30 HOH HOH . K 6 HOH B 46 446 32 HOH HOH . K 6 HOH B 47 447 34 HOH HOH . K 6 HOH B 48 448 41 HOH HOH . K 6 HOH B 49 449 45 HOH HOH . K 6 HOH B 50 450 50 HOH HOH . K 6 HOH B 51 451 53 HOH HOH . K 6 HOH B 52 452 59 HOH HOH . K 6 HOH B 53 453 63 HOH HOH . K 6 HOH B 54 454 65 HOH HOH . K 6 HOH B 55 455 67 HOH HOH . K 6 HOH B 56 456 74 HOH HOH . K 6 HOH B 57 457 79 HOH HOH . K 6 HOH B 58 458 89 HOH HOH . K 6 HOH B 59 459 92 HOH HOH . K 6 HOH B 60 460 93 HOH HOH . K 6 HOH B 61 461 99 HOH HOH . K 6 HOH B 62 462 100 HOH HOH . K 6 HOH B 63 463 103 HOH HOH . K 6 HOH B 64 464 106 HOH HOH . K 6 HOH B 65 465 107 HOH HOH . K 6 HOH B 66 466 111 HOH HOH . K 6 HOH B 67 467 116 HOH HOH . K 6 HOH B 68 468 122 HOH HOH . K 6 HOH B 69 469 123 HOH HOH . K 6 HOH B 70 470 130 HOH HOH . K 6 HOH B 71 471 131 HOH HOH . K 6 HOH B 72 472 132 HOH HOH . K 6 HOH B 73 473 141 HOH HOH . K 6 HOH B 74 474 153 HOH HOH . K 6 HOH B 75 475 180 HOH HOH . K 6 HOH B 76 476 183 HOH HOH . K 6 HOH B 77 477 184 HOH HOH . K 6 HOH B 78 478 191 HOH HOH . K 6 HOH B 79 479 197 HOH HOH . K 6 HOH B 80 480 201 HOH HOH . K 6 HOH B 81 481 215 HOH HOH . K 6 HOH B 82 482 217 HOH HOH . K 6 HOH B 83 483 218 HOH HOH . K 6 HOH B 84 484 219 HOH HOH . K 6 HOH B 85 485 220 HOH HOH . K 6 HOH B 86 486 221 HOH HOH . K 6 HOH B 87 487 222 HOH HOH . K 6 HOH B 88 488 227 HOH HOH . K 6 HOH B 89 489 230 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O2 PAU . . . D 3 12.103 17.288 31.237 1 16.49 ? O2 PAU 302 A 1 HETATM 2 C C1 PAU . . . D 3 11.91 14.911 31.239 1 12.39 ? C1 PAU 302 A 1 HETATM 3 C C2 PAU . . . D 3 11.187 16.244 31.062 1 13.09 ? C2 PAU 302 A 1 HETATM 4 C C3 PAU . . . D 3 12.909 14.734 30.1 1 6.28 ? C3 PAU 302 A 1 HETATM 5 C C4 PAU . . . D 3 10.88 13.782 31.208 1 7.06 ? C4 PAU 302 A 1 HETATM 6 C C5 PAU . . . D 3 12.634 14.94 32.587 1 13.33 ? C5 PAU 302 A 1 HETATM 7 O O5' PAU . . . D 3 11.693 15.173 33.597 1 16.66 ? O5' PAU 302 A 1 HETATM 8 C C6 PAU . . . D 3 13.354 13.625 32.896 1 14.74 ? C6 PAU 302 A 1 HETATM 9 O O6' PAU . . . D 3 14.44 13.413 32.467 1 14.24 ? O6' PAU 302 A 1 HETATM 10 N N PAU . . . D 3 12.713 12.633 33.739 1 11.74 ? N PAU 302 A 1 HETATM 11 C C8 PAU . . . D 3 13.413 11.396 34.034 1 3.47 ? C8 PAU 302 A 1 HETATM 12 C C9 PAU . . . D 3 12.463 10.204 33.928 1 12.38 ? C9 PAU 302 A 1 HETATM 13 C C PAU . . . D 3 11.192 10.462 34.739 1 8.78 ? C PAU 302 A 1 HETATM 14 O OXT PAU . . . D 3 10.936 11.618 35.173 1 9.93 ? OXT PAU 302 A 1 HETATM 15 O O PAU . . . D 3 10.396 9.513 34.972 1 7.19 ? O PAU 302 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 15 #