data_5BKK # _model_server_result.job_id 633wGU0FFQPOPlCvXuRDCA _model_server_result.datetime_utc '2024-11-14 05:33:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5bkk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":403}' # _entry.id 5BKK # _exptl.entry_id 5BKK _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 382.602 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (~{R})-phenyl-[4-[(tributyl-$l^{4}-azanyl)methyl]phenyl]methanol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5BKK _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5BKK _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id K _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O THR 59 A THR 59 1_555 J K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.67 ? metalc ? metalc2 A OG1 THR 59 A THR 59 1_555 J K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.127 ? metalc ? metalc3 A O THR 59 A THR 59 1_555 N K K . G K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.331 ? metalc ? metalc4 A O VAL 60 A VAL 60 1_555 N K K . G K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.679 ? metalc ? metalc5 J K K . A K 402 1_555 C O THR 59 C THR 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.602 ? metalc ? metalc6 J K K . A K 402 1_555 C OG1 THR 59 C THR 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.043 ? metalc ? metalc7 J K K . A K 402 1_555 E O THR 59 E THR 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.593 ? metalc ? metalc8 J K K . A K 402 1_555 E OG1 THR 59 E THR 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.037 ? metalc ? metalc9 J K K . A K 402 1_555 G O THR 59 G THR 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.787 ? metalc ? metalc10 J K K . A K 402 1_555 G OG1 THR 59 G THR 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.068 ? metalc ? metalc11 C O THR 59 C THR 59 1_555 N K K . G K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.489 ? metalc ? metalc12 C O VAL 60 C VAL 60 1_555 N K K . G K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.913 ? metalc ? metalc13 E O THR 59 E THR 59 1_555 N K K . G K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.311 ? metalc ? metalc14 E O VAL 60 E VAL 60 1_555 N K K . G K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.54 ? metalc ? metalc15 G O THR 59 G THR 59 1_555 N K K . G K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.015 ? metalc ? metalc16 G O VAL 60 G VAL 60 1_555 N K K . G K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? # _chem_comp.formula 'C26 H40 N O' _chem_comp.formula_weight 382.602 _chem_comp.id YQ4 _chem_comp.mon_nstd_flag . _chem_comp.name (~{R})-phenyl-[4-[(tributyl-$l^{4}-azanyl)methyl]phenyl]methanol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C19 C18 YQ4 sing 501 n n C19 C20 YQ4 sing 502 n n O01 C01 YQ4 sing 503 n n C17 C18 YQ4 sing 504 n n C17 N01 YQ4 sing 505 n n C13 N01 YQ4 sing 506 n n C13 C14 YQ4 sing 507 n n C24 C23 YQ4 sing 508 n n C22 C23 YQ4 sing 509 n n C22 C21 YQ4 sing 510 n n C26 C25 YQ4 doub 511 n y C26 C08 YQ4 sing 512 n y C01 C08 YQ4 sing 513 n n C01 C02 YQ4 sing 514 n n N01 C21 YQ4 sing 515 n n N01 C12 YQ4 sing 516 n n C25 C11 YQ4 sing 517 n y C08 C09 YQ4 doub 518 n y C15 C14 YQ4 sing 519 n n C15 C16 YQ4 sing 520 n n C11 C10 YQ4 doub 521 n y C11 C12 YQ4 sing 522 n n C03 C02 YQ4 doub 523 n y C03 C04 YQ4 sing 524 n y C09 C10 YQ4 sing 525 n y C02 C07 YQ4 sing 526 n y C04 C05 YQ4 doub 527 n y C07 C06 YQ4 doub 528 n y C05 C06 YQ4 sing 529 n y C01 H1 YQ4 sing 530 n n C03 H2 YQ4 sing 531 n n C04 H3 YQ4 sing 532 n n C05 H4 YQ4 sing 533 n n C06 H5 YQ4 sing 534 n n C07 H6 YQ4 sing 535 n n C09 H7 YQ4 sing 536 n n C10 H8 YQ4 sing 537 n n C12 H9 YQ4 sing 538 n n C12 H10 YQ4 sing 539 n n C13 H11 YQ4 sing 540 n n C13 H12 YQ4 sing 541 n n C14 H13 YQ4 sing 542 n n C14 H14 YQ4 sing 543 n n C15 H15 YQ4 sing 544 n n C15 H16 YQ4 sing 545 n n C16 H17 YQ4 sing 546 n n C16 H18 YQ4 sing 547 n n C16 H19 YQ4 sing 548 n n C17 H20 YQ4 sing 549 n n C17 H21 YQ4 sing 550 n n C18 H22 YQ4 sing 551 n n C18 H23 YQ4 sing 552 n n C19 H24 YQ4 sing 553 n n C19 H25 YQ4 sing 554 n n C20 H26 YQ4 sing 555 n n C20 H27 YQ4 sing 556 n n C20 H28 YQ4 sing 557 n n C21 H29 YQ4 sing 558 n n C21 H30 YQ4 sing 559 n n C22 H31 YQ4 sing 560 n n C22 H32 YQ4 sing 561 n n C23 H33 YQ4 sing 562 n n C23 H34 YQ4 sing 563 n n C24 H35 YQ4 sing 564 n n C24 H36 YQ4 sing 565 n n C24 H37 YQ4 sing 566 n n C25 H38 YQ4 sing 567 n n C26 H39 YQ4 sing 568 n n O01 H40 YQ4 sing 569 n n # _atom_sites.entry_id 5BKK _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 PGW A 1 401 401 PGW PGW . J 3 K A 1 402 1 K K . K 4 YQ4 A 1 403 401 YQ4 BTA . L 3 K E 1 401 3 K K . M 2 PGW G 1 401 401 PGW PGW . N 3 K G 1 402 2 K K . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 YQ4 . . . K 4 137.149 136.959 103.237 1 45.75 ? C01 YQ4 403 A 1 HETATM 2 C C02 YQ4 . . . K 4 138.15 136.989 104.408 1 45.75 ? C02 YQ4 403 A 1 HETATM 3 C C03 YQ4 . . . K 4 139.51 137.011 104.094 1 45.75 ? C03 YQ4 403 A 1 HETATM 4 C C04 YQ4 . . . K 4 140.469 137.043 105.105 1 45.75 ? C04 YQ4 403 A 1 HETATM 5 C C05 YQ4 . . . K 4 140.071 137.054 106.441 1 45.75 ? C05 YQ4 403 A 1 HETATM 6 C C06 YQ4 . . . K 4 138.715 137.033 106.764 1 45.75 ? C06 YQ4 403 A 1 HETATM 7 C C07 YQ4 . . . K 4 137.756 137 105.75 1 45.75 ? C07 YQ4 403 A 1 HETATM 8 C C08 YQ4 . . . K 4 135.767 136.351 103.559 1 45.75 ? C08 YQ4 403 A 1 HETATM 9 C C09 YQ4 . . . K 4 134.741 137.12 104.127 1 45.75 ? C09 YQ4 403 A 1 HETATM 10 C C10 YQ4 . . . K 4 133.497 136.536 104.404 1 45.75 ? C10 YQ4 403 A 1 HETATM 11 C C11 YQ4 . . . K 4 133.24 135.194 104.078 1 45.75 ? C11 YQ4 403 A 1 HETATM 12 C C12 YQ4 . . . K 4 131.833 134.544 104.417 1 45.75 ? C12 YQ4 403 A 1 HETATM 13 C C13 YQ4 . . . K 4 130.325 135.803 102.69 1 45.75 ? C13 YQ4 403 A 1 HETATM 14 C C14 YQ4 . . . K 4 130.054 136.947 103.737 1 45.75 ? C14 YQ4 403 A 1 HETATM 15 C C15 YQ4 . . . K 4 128.607 137.524 103.698 1 45.75 ? C15 YQ4 403 A 1 HETATM 16 C C16 YQ4 . . . K 4 127.942 137.498 105.096 1 45.75 ? C16 YQ4 403 A 1 HETATM 17 C C17 YQ4 . . . K 4 131.09 133.488 102.307 1 45.75 ? C17 YQ4 403 A 1 HETATM 18 C C18 YQ4 . . . K 4 131.546 132.118 102.936 1 45.75 ? C18 YQ4 403 A 1 HETATM 19 C C19 YQ4 . . . K 4 131.061 130.866 102.146 1 45.75 ? C19 YQ4 403 A 1 HETATM 20 C C20 YQ4 . . . K 4 131.043 129.591 103.025 1 45.75 ? C20 YQ4 403 A 1 HETATM 21 C C21 YQ4 . . . K 4 129.506 133.993 104.102 1 45.75 ? C21 YQ4 403 A 1 HETATM 22 C C22 YQ4 . . . K 4 128.268 133.792 103.155 1 45.75 ? C22 YQ4 403 A 1 HETATM 23 C C23 YQ4 . . . K 4 127.249 132.747 103.695 1 45.75 ? C23 YQ4 403 A 1 HETATM 24 C C24 YQ4 . . . K 4 127.436 131.367 103.024 1 45.75 ? C24 YQ4 403 A 1 HETATM 25 C C25 YQ4 . . . K 4 134.273 134.43 103.507 1 45.75 ? C25 YQ4 403 A 1 HETATM 26 C C26 YQ4 . . . K 4 135.521 135.012 103.236 1 45.75 ? C26 YQ4 403 A 1 HETATM 27 N N01 YQ4 . . . K 4 130.727 134.507 103.369 1 45.75 ? N01 YQ4 403 A 1 HETATM 28 O O01 YQ4 . . . K 4 137.731 136.174 102.251 1 45.75 ? O01 YQ4 403 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 28 #