data_5BMG
#
_model_server_result.job_id            dIVq2jXFfqpOornTXULmKw 
_model_server_result.datetime_utc      '2024-11-05 09:27:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5bmg 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":101}' 
#
_entry.id    5BMG 
#
_exptl.entry_id    5BMG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              264.385 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            'S-[(1-oxyl-2,2,5,5-tetramethyl-2,5-dihydro-1H-pyrrol-3-yl)methyl] methanesulfonothioate' 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90.14 
_cell.angle_gamma         90 
_cell.entry_id            5BMG 
_cell.length_a            52.323 
_cell.length_b            79.498 
_cell.length_c            52.406 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5BMG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
? monomeric 1 author_defined_assembly 5 
? monomeric 1 author_defined_assembly 6 
? monomeric 1 author_defined_assembly 7 
? monomeric 1 author_defined_assembly 8 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,I,R 1 1 
B,J,K,L,S 2 1 
C,T 3 1 
D,M,U 4 1 
E,N,V 5 1 
F,O,P,W 6 1 
G,Q,X 7 1 
H,Y 8 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 M N N 
? 2 N N N 
? 2 O N N 
? 2 Q N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 15 A CYS 15 1_555 I S1 MTN . A MTN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf2 B SG CYS 15 B CYS 15 1_555 J S1 MTN . B MTN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf3 K S1 MTN . B MTN 102 1_555 H SG CYS 15 H CYS 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf4 D SG CYS 15 D CYS 15 1_555 M S1 MTN . D MTN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf5 E SG CYS 15 E CYS 15 1_555 N S1 MTN . E MTN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf6 F SG CYS 15 F CYS 15 1_555 O S1 MTN . F MTN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf7 G SG CYS 15 G CYS 15 1_555 Q S1 MTN . G MTN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
#
_chem_comp.formula           'C10 H18 N O3 S2' 
_chem_comp.formula_weight    264.385 
_chem_comp.id                MTN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'S-[(1-oxyl-2,2,5,5-tetramethyl-2,5-dihydro-1H-pyrrol-3-yl)methyl] methanesulfonothioate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     MTSL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 N1 MTN sing 190 n n 
N1 C1 MTN sing 191 n n 
N1 C5 MTN sing 192 n n 
C1 C2 MTN sing 193 n n 
C1 C8 MTN sing 194 n n 
C1 C9 MTN sing 195 n n 
C2 C3 MTN doub 196 n n 
C2 H2 MTN sing 197 n n 
C3 C4 MTN sing 198 n n 
C3 C5 MTN sing 199 n n 
C4 S1 MTN sing 200 n n 
C4 H41 MTN sing 201 n n 
C4 H42 MTN sing 202 n n 
C5 C6 MTN sing 203 n n 
C5 C7 MTN sing 204 n n 
C6 H61 MTN sing 205 n n 
C6 H62 MTN sing 206 n n 
C6 H63 MTN sing 207 n n 
C7 H71 MTN sing 208 n n 
C7 H72 MTN sing 209 n n 
C7 H73 MTN sing 210 n n 
C8 H81 MTN sing 211 n n 
C8 H82 MTN sing 212 n n 
C8 H83 MTN sing 213 n n 
C9 H91 MTN sing 214 n n 
C9 H92 MTN sing 215 n n 
C9 H93 MTN sing 216 n n 
S1 S2 MTN sing 217 n n 
S2 O2 MTN doub 218 n n 
S2 O3 MTN doub 219 n n 
S2 C12 MTN sing 220 n n 
C12 H4 MTN sing 221 n n 
C12 H1 MTN sing 222 n n 
C12 H3 MTN sing 223 n n 
#
_atom_sites.entry_id                     5BMG 
_atom_sites.fract_transf_matrix[1][1]    0.019112 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000047 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012579 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.019082 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 MTN A 1 101 115 MTN CYX . 
J 2 MTN B 1 101 115 MTN CYX . 
K 2 MTN B 1 102 115 MTN CYX . 
L 3 TRS B 1 103 2 TRS TRS . 
M 2 MTN D 1 101 115 MTN CYX . 
N 2 MTN E 1 101 115 MTN CYX . 
O 2 MTN F 1 101 115 MTN CYX . 
P 3 TRS F 1 102 1 TRS TRS . 
Q 2 MTN G 1 101 115 MTN CYX . 
R 4 HOH A 1 201 45 HOH HOH . 
R 4 HOH A 2 202 102 HOH HOH . 
R 4 HOH A 3 203 87 HOH HOH . 
R 4 HOH A 4 204 138 HOH HOH . 
R 4 HOH A 5 205 81 HOH HOH . 
R 4 HOH A 6 206 53 HOH HOH . 
R 4 HOH A 7 207 61 HOH HOH . 
R 4 HOH A 8 208 44 HOH HOH . 
R 4 HOH A 9 209 106 HOH HOH . 
R 4 HOH A 10 210 92 HOH HOH . 
R 4 HOH A 11 211 134 HOH HOH . 
R 4 HOH A 12 212 51 HOH HOH . 
R 4 HOH A 13 213 62 HOH HOH . 
R 4 HOH A 14 214 58 HOH HOH . 
R 4 HOH A 15 215 132 HOH HOH . 
R 4 HOH A 16 216 9 HOH HOH . 
R 4 HOH A 17 217 126 HOH HOH . 
R 4 HOH A 18 218 113 HOH HOH . 
R 4 HOH A 19 219 3 HOH HOH . 
R 4 HOH A 20 220 88 HOH HOH . 
R 4 HOH A 21 221 154 HOH HOH . 
R 4 HOH A 22 222 153 HOH HOH . 
R 4 HOH A 23 223 74 HOH HOH . 
R 4 HOH A 24 224 103 HOH HOH . 
R 4 HOH A 25 225 131 HOH HOH . 
R 4 HOH A 26 226 109 HOH HOH . 
S 4 HOH B 1 201 107 HOH HOH . 
S 4 HOH B 2 202 38 HOH HOH . 
S 4 HOH B 3 203 82 HOH HOH . 
S 4 HOH B 4 204 137 HOH HOH . 
S 4 HOH B 5 205 16 HOH HOH . 
S 4 HOH B 6 206 29 HOH HOH . 
S 4 HOH B 7 207 18 HOH HOH . 
S 4 HOH B 8 208 71 HOH HOH . 
S 4 HOH B 9 209 66 HOH HOH . 
S 4 HOH B 10 210 37 HOH HOH . 
S 4 HOH B 11 211 22 HOH HOH . 
S 4 HOH B 12 212 13 HOH HOH . 
S 4 HOH B 13 213 48 HOH HOH . 
S 4 HOH B 14 214 121 HOH HOH . 
S 4 HOH B 15 215 118 HOH HOH . 
S 4 HOH B 16 216 101 HOH HOH . 
S 4 HOH B 17 217 41 HOH HOH . 
T 4 HOH C 1 101 160 HOH HOH . 
T 4 HOH C 2 102 130 HOH HOH . 
T 4 HOH C 3 103 77 HOH HOH . 
T 4 HOH C 4 104 89 HOH HOH . 
T 4 HOH C 5 105 99 HOH HOH . 
T 4 HOH C 6 106 105 HOH HOH . 
T 4 HOH C 7 107 85 HOH HOH . 
T 4 HOH C 8 108 119 HOH HOH . 
T 4 HOH C 9 109 15 HOH HOH . 
T 4 HOH C 10 110 69 HOH HOH . 
T 4 HOH C 11 111 1 HOH HOH . 
T 4 HOH C 12 112 90 HOH HOH . 
T 4 HOH C 13 113 11 HOH HOH . 
T 4 HOH C 14 114 147 HOH HOH . 
T 4 HOH C 15 115 122 HOH HOH . 
U 4 HOH D 1 201 12 HOH HOH . 
U 4 HOH D 2 202 114 HOH HOH . 
U 4 HOH D 3 203 31 HOH HOH . 
U 4 HOH D 4 204 46 HOH HOH . 
U 4 HOH D 5 205 67 HOH HOH . 
U 4 HOH D 6 206 24 HOH HOH . 
U 4 HOH D 7 207 56 HOH HOH . 
U 4 HOH D 8 208 35 HOH HOH . 
U 4 HOH D 9 209 72 HOH HOH . 
U 4 HOH D 10 210 83 HOH HOH . 
U 4 HOH D 11 211 14 HOH HOH . 
U 4 HOH D 12 212 55 HOH HOH . 
U 4 HOH D 13 213 49 HOH HOH . 
U 4 HOH D 14 214 156 HOH HOH . 
U 4 HOH D 15 215 150 HOH HOH . 
U 4 HOH D 16 216 21 HOH HOH . 
U 4 HOH D 17 217 155 HOH HOH . 
U 4 HOH D 18 218 120 HOH HOH . 
U 4 HOH D 19 219 111 HOH HOH . 
U 4 HOH D 20 220 144 HOH HOH . 
U 4 HOH D 21 221 161 HOH HOH . 
U 4 HOH D 22 222 112 HOH HOH . 
V 4 HOH E 1 201 42 HOH HOH . 
V 4 HOH E 2 202 7 HOH HOH . 
V 4 HOH E 3 203 98 HOH HOH . 
V 4 HOH E 4 204 33 HOH HOH . 
V 4 HOH E 5 205 39 HOH HOH . 
V 4 HOH E 6 206 4 HOH HOH . 
V 4 HOH E 7 207 104 HOH HOH . 
V 4 HOH E 8 208 116 HOH HOH . 
V 4 HOH E 9 209 80 HOH HOH . 
V 4 HOH E 10 210 142 HOH HOH . 
V 4 HOH E 11 211 27 HOH HOH . 
V 4 HOH E 12 212 54 HOH HOH . 
V 4 HOH E 13 213 151 HOH HOH . 
V 4 HOH E 14 214 159 HOH HOH . 
V 4 HOH E 15 215 141 HOH HOH . 
W 4 HOH F 1 201 84 HOH HOH . 
W 4 HOH F 2 202 19 HOH HOH . 
W 4 HOH F 3 203 20 HOH HOH . 
W 4 HOH F 4 204 25 HOH HOH . 
W 4 HOH F 5 205 34 HOH HOH . 
W 4 HOH F 6 206 124 HOH HOH . 
W 4 HOH F 7 207 30 HOH HOH . 
W 4 HOH F 8 208 115 HOH HOH . 
W 4 HOH F 9 209 135 HOH HOH . 
W 4 HOH F 10 210 6 HOH HOH . 
W 4 HOH F 11 211 64 HOH HOH . 
W 4 HOH F 12 212 129 HOH HOH . 
W 4 HOH F 13 213 28 HOH HOH . 
W 4 HOH F 14 214 95 HOH HOH . 
W 4 HOH F 15 215 36 HOH HOH . 
W 4 HOH F 16 216 143 HOH HOH . 
W 4 HOH F 17 217 32 HOH HOH . 
W 4 HOH F 18 218 73 HOH HOH . 
W 4 HOH F 19 219 139 HOH HOH . 
W 4 HOH F 20 220 136 HOH HOH . 
W 4 HOH F 21 221 110 HOH HOH . 
W 4 HOH F 22 222 140 HOH HOH . 
X 4 HOH G 1 201 47 HOH HOH . 
X 4 HOH G 2 202 43 HOH HOH . 
X 4 HOH G 3 203 78 HOH HOH . 
X 4 HOH G 4 204 10 HOH HOH . 
X 4 HOH G 5 205 68 HOH HOH . 
X 4 HOH G 6 206 117 HOH HOH . 
X 4 HOH G 7 207 23 HOH HOH . 
X 4 HOH G 8 208 8 HOH HOH . 
X 4 HOH G 9 209 76 HOH HOH . 
X 4 HOH G 10 210 97 HOH HOH . 
X 4 HOH G 11 211 2 HOH HOH . 
X 4 HOH G 12 212 60 HOH HOH . 
X 4 HOH G 13 213 123 HOH HOH . 
X 4 HOH G 14 214 5 HOH HOH . 
X 4 HOH G 15 215 125 HOH HOH . 
X 4 HOH G 16 216 57 HOH HOH . 
X 4 HOH G 17 217 145 HOH HOH . 
X 4 HOH G 18 218 40 HOH HOH . 
X 4 HOH G 19 219 146 HOH HOH . 
X 4 HOH G 20 220 75 HOH HOH . 
X 4 HOH G 21 221 158 HOH HOH . 
Y 4 HOH H 1 101 96 HOH HOH . 
Y 4 HOH H 2 102 50 HOH HOH . 
Y 4 HOH H 3 103 86 HOH HOH . 
Y 4 HOH H 4 104 26 HOH HOH . 
Y 4 HOH H 5 105 65 HOH HOH . 
Y 4 HOH H 6 106 94 HOH HOH . 
Y 4 HOH H 7 107 17 HOH HOH . 
Y 4 HOH H 8 108 100 HOH HOH . 
Y 4 HOH H 9 109 63 HOH HOH . 
Y 4 HOH H 10 110 93 HOH HOH . 
Y 4 HOH H 11 111 127 HOH HOH . 
Y 4 HOH H 12 112 59 HOH HOH . 
Y 4 HOH H 13 113 91 HOH HOH . 
Y 4 HOH H 14 114 79 HOH HOH . 
Y 4 HOH H 15 115 108 HOH HOH . 
Y 4 HOH H 16 116 148 HOH HOH . 
Y 4 HOH H 17 117 52 HOH HOH . 
Y 4 HOH H 18 118 128 HOH HOH . 
Y 4 HOH H 19 119 149 HOH HOH . 
Y 4 HOH H 20 120 133 HOH HOH . 
Y 4 HOH H 21 121 157 HOH HOH . 
Y 4 HOH H 22 122 152 HOH HOH . 
Y 4 HOH H 23 123 70 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 MTN . . . J 2 68.811 15.313 33.241 1 59.72 ? O1 MTN 101 B 1 
HETATM 2 N N1 MTN . . . J 2 68.763 14.18 32.79 1 58.07 ? N1 MTN 101 B 1 
HETATM 3 C C1 MTN . . . J 2 69.916 13.306 32.68 1 48 ? C1 MTN 101 B 1 
HETATM 4 C C2 MTN . . . J 2 69.341 12.057 32.073 1 66.02 ? C2 MTN 101 B 1 
HETATM 5 C C3 MTN . . . J 2 68.032 12.223 31.86 1 58.18 ? C3 MTN 101 B 1 
HETATM 6 C C4 MTN . . . J 2 67.13 11.184 31.248 1 33.38 ? C4 MTN 101 B 1 
HETATM 7 S S1 MTN . . . J 2 67.631 9.503 31.448 1 42.19 ? S1 MTN 101 B 1 
HETATM 8 C C5 MTN . . . J 2 67.549 13.584 32.278 1 72.97 ? C5 MTN 101 B 1 
HETATM 9 C C6 MTN . . . J 2 67.046 14.382 31.099 1 77.55 ? C6 MTN 101 B 1 
HETATM 10 C C7 MTN . . . J 2 66.435 13.465 33.31 1 68.49 ? C7 MTN 101 B 1 
HETATM 11 C C8 MTN . . . J 2 70.969 13.868 31.742 1 53.97 ? C8 MTN 101 B 1 
HETATM 12 C C9 MTN . . . J 2 70.5 12.98 34.049 1 46.25 ? C9 MTN 101 B 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           365 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           12 
#