data_5BMH # _model_server_result.job_id PZTrMVxTx3To-iRe5Sl4jw _model_server_result.datetime_utc '2024-11-23 10:43:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5bmh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":101}' # _entry.id 5BMH # _exptl.entry_id 5BMH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 264.385 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'S-[(1-oxyl-2,2,5,5-tetramethyl-2,5-dihydro-1H-pyrrol-3-yl)methyl] methanesulfonothioate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5BMH _cell.length_a 25.037 _cell.length_b 37.194 _cell.length_c 49.217 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5BMH _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 44 A CYS 44 1_555 B S1 MTN . A MTN 101 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.04 ? covale ? covale2 A SG CYS 44 A CYS 44 1_555 B S1 MTN . A MTN 101 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.044 ? # _chem_comp.formula 'C10 H18 N O3 S2' _chem_comp.formula_weight 264.385 _chem_comp.id MTN _chem_comp.mon_nstd_flag . _chem_comp.name 'S-[(1-oxyl-2,2,5,5-tetramethyl-2,5-dihydro-1H-pyrrol-3-yl)methyl] methanesulfonothioate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms MTSL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 N1 MTN sing 190 n n N1 C1 MTN sing 191 n n N1 C5 MTN sing 192 n n C1 C2 MTN sing 193 n n C1 C8 MTN sing 194 n n C1 C9 MTN sing 195 n n C2 C3 MTN doub 196 n n C2 H2 MTN sing 197 n n C3 C4 MTN sing 198 n n C3 C5 MTN sing 199 n n C4 S1 MTN sing 200 n n C4 H41 MTN sing 201 n n C4 H42 MTN sing 202 n n C5 C6 MTN sing 203 n n C5 C7 MTN sing 204 n n C6 H61 MTN sing 205 n n C6 H62 MTN sing 206 n n C6 H63 MTN sing 207 n n C7 H71 MTN sing 208 n n C7 H72 MTN sing 209 n n C7 H73 MTN sing 210 n n C8 H81 MTN sing 211 n n C8 H82 MTN sing 212 n n C8 H83 MTN sing 213 n n C9 H91 MTN sing 214 n n C9 H92 MTN sing 215 n n C9 H93 MTN sing 216 n n S1 S2 MTN sing 217 n n S2 O2 MTN doub 218 n n S2 O3 MTN doub 219 n n S2 C12 MTN sing 220 n n C12 H4 MTN sing 221 n n C12 H1 MTN sing 222 n n C12 H3 MTN sing 223 n n # _atom_sites.entry_id 5BMH _atom_sites.fract_transf_matrix[1][1] 0.039941 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.026886 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020318 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MTN A 1 101 144 MTN CYX . C 3 HOH A 1 201 82 HOH HOH . C 3 HOH A 2 202 62 HOH HOH . C 3 HOH A 3 203 46 HOH HOH . C 3 HOH A 4 204 75 HOH HOH . C 3 HOH A 5 205 55 HOH HOH . C 3 HOH A 6 206 71 HOH HOH . C 3 HOH A 7 207 69 HOH HOH . C 3 HOH A 8 208 42 HOH HOH . C 3 HOH A 9 209 47 HOH HOH . C 3 HOH A 10 210 23 HOH HOH . C 3 HOH A 11 211 97 HOH HOH . C 3 HOH A 12 212 73 HOH HOH . C 3 HOH A 13 213 4 HOH HOH . C 3 HOH A 14 214 1 HOH HOH . C 3 HOH A 15 215 3 HOH HOH . C 3 HOH A 16 216 34 HOH HOH . C 3 HOH A 17 217 12 HOH HOH . C 3 HOH A 18 218 89 HOH HOH . C 3 HOH A 19 219 21 HOH HOH . C 3 HOH A 20 220 19 HOH HOH . C 3 HOH A 21 221 39 HOH HOH . C 3 HOH A 22 222 9 HOH HOH . C 3 HOH A 23 223 83 HOH HOH . C 3 HOH A 24 224 38 HOH HOH . C 3 HOH A 25 225 32 HOH HOH . C 3 HOH A 26 226 11 HOH HOH . C 3 HOH A 27 227 52 HOH HOH . C 3 HOH A 28 228 20 HOH HOH . C 3 HOH A 29 229 7 HOH HOH . C 3 HOH A 30 230 36 HOH HOH . C 3 HOH A 31 231 8 HOH HOH . C 3 HOH A 32 232 87 HOH HOH . C 3 HOH A 33 233 40 HOH HOH . C 3 HOH A 34 234 13 HOH HOH . C 3 HOH A 35 235 57 HOH HOH . C 3 HOH A 36 236 10 HOH HOH . C 3 HOH A 37 237 17 HOH HOH . C 3 HOH A 38 238 2 HOH HOH . C 3 HOH A 39 239 78 HOH HOH . C 3 HOH A 40 240 15 HOH HOH . C 3 HOH A 41 241 26 HOH HOH . C 3 HOH A 42 242 14 HOH HOH . C 3 HOH A 43 243 43 HOH HOH . C 3 HOH A 44 244 5 HOH HOH . C 3 HOH A 45 245 56 HOH HOH . C 3 HOH A 46 246 63 HOH HOH . C 3 HOH A 47 247 60 HOH HOH . C 3 HOH A 48 248 88 HOH HOH . C 3 HOH A 49 249 16 HOH HOH . C 3 HOH A 50 250 28 HOH HOH . C 3 HOH A 51 251 50 HOH HOH . C 3 HOH A 52 252 37 HOH HOH . C 3 HOH A 53 253 81 HOH HOH . C 3 HOH A 54 254 27 HOH HOH . C 3 HOH A 55 255 45 HOH HOH . C 3 HOH A 56 256 33 HOH HOH . C 3 HOH A 57 257 22 HOH HOH . C 3 HOH A 58 258 72 HOH HOH . C 3 HOH A 59 259 6 HOH HOH . C 3 HOH A 60 260 74 HOH HOH . C 3 HOH A 61 261 51 HOH HOH . C 3 HOH A 62 262 64 HOH HOH . C 3 HOH A 63 263 49 HOH HOH . C 3 HOH A 64 264 90 HOH HOH . C 3 HOH A 65 265 76 HOH HOH . C 3 HOH A 66 266 65 HOH HOH . C 3 HOH A 67 267 18 HOH HOH . C 3 HOH A 68 268 85 HOH HOH . C 3 HOH A 69 269 93 HOH HOH . C 3 HOH A 70 270 96 HOH HOH . C 3 HOH A 71 271 67 HOH HOH . C 3 HOH A 72 272 70 HOH HOH . C 3 HOH A 73 273 98 HOH HOH . C 3 HOH A 74 274 29 HOH HOH . C 3 HOH A 75 275 68 HOH HOH . C 3 HOH A 76 276 59 HOH HOH . C 3 HOH A 77 277 95 HOH HOH . C 3 HOH A 78 278 54 HOH HOH . C 3 HOH A 79 279 92 HOH HOH . C 3 HOH A 80 280 79 HOH HOH . C 3 HOH A 81 281 48 HOH HOH . C 3 HOH A 82 282 84 HOH HOH . C 3 HOH A 83 283 80 HOH HOH . C 3 HOH A 84 284 86 HOH HOH . C 3 HOH A 85 285 61 HOH HOH . C 3 HOH A 86 286 35 HOH HOH . C 3 HOH A 87 287 24 HOH HOH . C 3 HOH A 88 288 53 HOH HOH . C 3 HOH A 89 289 30 HOH HOH . C 3 HOH A 90 290 31 HOH HOH . C 3 HOH A 91 291 44 HOH HOH . C 3 HOH A 92 292 94 HOH HOH . C 3 HOH A 93 293 25 HOH HOH . C 3 HOH A 94 294 41 HOH HOH . C 3 HOH A 95 295 58 HOH HOH . C 3 HOH A 96 296 77 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 MTN . A . B 2 -1.449 -8.899 -19.623 0.5 18.21 ? O1 MTN 101 A 1 HETATM 2 O O1 MTN . B . B 2 -1.546 -8.698 -19.561 0.5 18.53 ? O1 MTN 101 A 1 HETATM 3 N N1 MTN . A . B 2 -1.587 -8.858 -18.403 0.5 17.93 ? N1 MTN 101 A 1 HETATM 4 N N1 MTN . B . B 2 -1.682 -8.674 -18.335 0.5 18.09 ? N1 MTN 101 A 1 HETATM 5 C C1 MTN . A . B 2 -0.92 -7.876 -17.55 0.5 15.5 ? C1 MTN 101 A 1 HETATM 6 C C1 MTN . B . B 2 -0.981 -7.724 -17.48 0.5 15.49 ? C1 MTN 101 A 1 HETATM 7 C C2 MTN . A . B 2 -1.466 -8.255 -16.201 0.5 17.06 ? C2 MTN 101 A 1 HETATM 8 C C2 MTN . B . B 2 -1.537 -8.11 -16.134 0.5 16.95 ? C2 MTN 101 A 1 HETATM 9 C C3 MTN . A . B 2 -2.33 -9.277 -16.282 0.5 16.49 ? C3 MTN 101 A 1 HETATM 10 C C3 MTN . B . B 2 -2.423 -9.122 -16.199 0.5 16.4 ? C3 MTN 101 A 1 HETATM 11 C C4 MTN . A . B 2 -3.035 -9.897 -15.115 0.5 15.44 ? C4 MTN 101 A 1 HETATM 12 C C4 MTN . B . B 2 -3.127 -9.728 -15.002 0.5 15.51 ? C4 MTN 101 A 1 HETATM 13 S S1 MTN . A . B 2 -2.285 -11.461 -14.705 0.5 16.65 ? S1 MTN 101 A 1 HETATM 14 S S1 MTN . B . B 2 -2.394 -11.258 -14.427 0.5 17.66 ? S1 MTN 101 A 1 HETATM 15 C C5 MTN . A . B 2 -2.538 -9.716 -17.706 0.5 17.1 ? C5 MTN 101 A 1 HETATM 16 C C5 MTN . B . B 2 -2.639 -9.53 -17.637 0.5 16.96 ? C5 MTN 101 A 1 HETATM 17 C C6 MTN . A . B 2 -2.277 -11.2 -17.917 0.5 16.33 ? C6 MTN 101 A 1 HETATM 18 C C6 MTN . B . B 2 -2.355 -11.005 -17.864 0.5 16.24 ? C6 MTN 101 A 1 HETATM 19 C C7 MTN . A . B 2 -3.923 -9.282 -18.195 0.5 17.16 ? C7 MTN 101 A 1 HETATM 20 C C7 MTN . B . B 2 -4.016 -9.104 -18.158 0.5 17.01 ? C7 MTN 101 A 1 HETATM 21 C C8 MTN . A . B 2 0.593 -8.015 -17.609 0.5 15.32 ? C8 MTN 101 A 1 HETATM 22 C C8 MTN . B . B 2 0.527 -7.922 -17.55 0.5 15.31 ? C8 MTN 101 A 1 HETATM 23 C C9 MTN . A . B 2 -1.344 -6.478 -17.967 0.5 17 ? C9 MTN 101 A 1 HETATM 24 C C9 MTN . B . B 2 -1.317 -6.303 -17.914 0.5 17.01 ? C9 MTN 101 A 1 HETATM 25 H H2 MTN . A . B 2 -1.185 -7.775 -15.28 0.5 20.48 ? H2 MTN 101 A 1 HETATM 26 H H2 MTN . B . B 2 -1.232 -7.646 -15.21 0.5 20.34 ? H2 MTN 101 A 1 HETATM 27 H H41 MTN . A . B 2 -4.088 -10.047 -15.361 0.5 18.53 ? H41 MTN 101 A 1 HETATM 28 H H41 MTN . B . B 2 -4.171 -9.913 -15.264 0.5 18.61 ? H41 MTN 101 A 1 HETATM 29 H H42 MTN . A . B 2 -2.98 -9.226 -14.255 0.5 18.53 ? H42 MTN 101 A 1 HETATM 30 H H42 MTN . B . B 2 -3.121 -9.004 -14.185 0.5 18.61 ? H42 MTN 101 A 1 HETATM 31 H H61 MTN . A . B 2 -2.945 -11.765 -17.319 0.5 19.6 ? H61 MTN 101 A 1 HETATM 32 H H61 MTN . B . B 2 -3.016 -11.586 -17.274 0.5 19.48 ? H61 MTN 101 A 1 HETATM 33 H H62 MTN . A . B 2 -1.28 -11.426 -17.641 0.5 19.6 ? H62 MTN 101 A 1 HETATM 34 H H62 MTN . B . B 2 -1.355 -11.219 -17.589 0.5 19.48 ? H62 MTN 101 A 1 HETATM 35 H H63 MTN . A . B 2 -2.425 -11.443 -18.937 0.5 19.6 ? H63 MTN 101 A 1 HETATM 36 H H63 MTN . B . B 2 -2.498 -11.239 -18.887 0.5 19.48 ? H63 MTN 101 A 1 HETATM 37 H H71 MTN . A . B 2 -4.112 -8.289 -17.881 0.5 20.6 ? H71 MTN 101 A 1 HETATM 38 H H71 MTN . B . B 2 -4.212 -8.106 -17.862 0.5 20.41 ? H71 MTN 101 A 1 HETATM 39 H H72 MTN . A . B 2 -4.658 -9.927 -17.789 0.5 20.6 ? H72 MTN 101 A 1 HETATM 40 H H72 MTN . B . B 2 -4.758 -9.743 -17.758 0.5 20.41 ? H72 MTN 101 A 1 HETATM 41 H H73 MTN . A . B 2 -3.955 -9.33 -19.252 0.5 20.6 ? H73 MTN 101 A 1 HETATM 42 H H73 MTN . B . B 2 -4.028 -9.167 -19.215 0.5 20.41 ? H73 MTN 101 A 1 HETATM 43 H H81 MTN . A . B 2 0.868 -8.998 -17.328 0.5 18.39 ? H81 MTN 101 A 1 HETATM 44 H H81 MTN . B . B 2 0.764 -8.921 -17.29 0.5 18.37 ? H81 MTN 101 A 1 HETATM 45 H H82 MTN . A . B 2 0.927 -7.823 -18.595 0.5 18.39 ? H82 MTN 101 A 1 HETATM 46 H H82 MTN . B . B 2 0.864 -7.723 -18.534 0.5 18.37 ? H82 MTN 101 A 1 HETATM 47 H H83 MTN . A . B 2 1.037 -7.32 -16.944 0.5 18.39 ? H83 MTN 101 A 1 HETATM 48 H H83 MTN . B . B 2 1.001 -7.26 -16.873 0.5 18.37 ? H83 MTN 101 A 1 HETATM 49 H H91 MTN . A . B 2 -1.064 -5.785 -17.216 0.5 20.4 ? H91 MTN 101 A 1 HETATM 50 H H91 MTN . B . B 2 -1.001 -5.622 -17.167 0.5 20.41 ? H91 MTN 101 A 1 HETATM 51 H H92 MTN . A . B 2 -2.394 -6.451 -18.098 0.5 20.4 ? H92 MTN 101 A 1 HETATM 52 H H92 MTN . B . B 2 -2.363 -6.214 -18.053 0.5 20.41 ? H92 MTN 101 A 1 HETATM 53 H H93 MTN . A . B 2 -0.868 -6.221 -18.878 0.5 20.4 ? H93 MTN 101 A 1 HETATM 54 H H93 MTN . B . B 2 -0.82 -6.085 -18.824 0.5 20.41 ? H93 MTN 101 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 618 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 54 #