data_5BMI # _model_server_result.job_id PMZ7Txh0-KHYPN8SBEru_g _model_server_result.datetime_utc '2024-11-05 21:26:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5bmi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":101}' # _entry.id 5BMI # _exptl.entry_id 5BMI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 264.385 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'S-[(1-oxyl-2,2,5,5-tetramethyl-2,5-dihydro-1H-pyrrol-3-yl)methyl] methanesulfonothioate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.24 _cell.angle_gamma 90 _cell.entry_id 5BMI _cell.length_a 24.979 _cell.length_b 37.507 _cell.length_c 26.35 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5BMI _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 44 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 44 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id S1 _struct_conn.ptnr2_label_comp_id MTN _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id MTN _struct_conn.ptnr2_auth_seq_id 101 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.026 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C10 H18 N O3 S2' _chem_comp.formula_weight 264.385 _chem_comp.id MTN _chem_comp.mon_nstd_flag . _chem_comp.name 'S-[(1-oxyl-2,2,5,5-tetramethyl-2,5-dihydro-1H-pyrrol-3-yl)methyl] methanesulfonothioate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms MTSL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 N1 MTN sing 190 n n N1 C1 MTN sing 191 n n N1 C5 MTN sing 192 n n C1 C2 MTN sing 193 n n C1 C8 MTN sing 194 n n C1 C9 MTN sing 195 n n C2 C3 MTN doub 196 n n C2 H2 MTN sing 197 n n C3 C4 MTN sing 198 n n C3 C5 MTN sing 199 n n C4 S1 MTN sing 200 n n C4 H41 MTN sing 201 n n C4 H42 MTN sing 202 n n C5 C6 MTN sing 203 n n C5 C7 MTN sing 204 n n C6 H61 MTN sing 205 n n C6 H62 MTN sing 206 n n C6 H63 MTN sing 207 n n C7 H71 MTN sing 208 n n C7 H72 MTN sing 209 n n C7 H73 MTN sing 210 n n C8 H81 MTN sing 211 n n C8 H82 MTN sing 212 n n C8 H83 MTN sing 213 n n C9 H91 MTN sing 214 n n C9 H92 MTN sing 215 n n C9 H93 MTN sing 216 n n S1 S2 MTN sing 217 n n S2 O2 MTN doub 218 n n S2 O3 MTN doub 219 n n S2 C12 MTN sing 220 n n C12 H4 MTN sing 221 n n C12 H1 MTN sing 222 n n C12 H3 MTN sing 223 n n # _atom_sites.entry_id 5BMI _atom_sites.fract_transf_matrix[1][1] 0.040034 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.013196 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.026662 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.03996 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MTN A 1 101 144 MTN CYX . C 3 HOH A 1 201 1 HOH HOH . C 3 HOH A 2 202 10 HOH HOH . C 3 HOH A 3 203 5 HOH HOH . C 3 HOH A 4 204 15 HOH HOH . C 3 HOH A 5 205 2 HOH HOH . C 3 HOH A 6 206 11 HOH HOH . C 3 HOH A 7 207 3 HOH HOH . C 3 HOH A 8 208 4 HOH HOH . C 3 HOH A 9 209 7 HOH HOH . C 3 HOH A 10 210 8 HOH HOH . C 3 HOH A 11 211 6 HOH HOH . C 3 HOH A 12 212 9 HOH HOH . C 3 HOH A 13 213 12 HOH HOH . C 3 HOH A 14 214 14 HOH HOH . C 3 HOH A 15 215 13 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 MTN . . . B 2 -6.042 15.519 -4.957 1 59.47 ? O1 MTN 101 A 1 HETATM 2 N N1 MTN . . . B 2 -7.062 15.582 -4.289 1 57.54 ? N1 MTN 101 A 1 HETATM 3 C C1 MTN . . . B 2 -7.935 16.746 -4.271 1 58.98 ? C1 MTN 101 A 1 HETATM 4 C C2 MTN . . . B 2 -9.023 16.326 -3.326 1 57.38 ? C2 MTN 101 A 1 HETATM 5 C C3 MTN . . . B 2 -8.791 15.092 -2.882 1 57.02 ? C3 MTN 101 A 1 HETATM 6 C C4 MTN . . . B 2 -9.717 14.391 -1.929 1 57.92 ? C4 MTN 101 A 1 HETATM 7 S S1 MTN . . . B 2 -11.334 15.034 -2.19 1 54.77 ? S1 MTN 101 A 1 HETATM 8 C C5 MTN . . . B 2 -7.544 14.495 -3.455 1 56.58 ? C5 MTN 101 A 1 HETATM 9 C C6 MTN . . . B 2 -7.924 13.274 -4.272 1 58.02 ? C6 MTN 101 A 1 HETATM 10 C C7 MTN . . . B 2 -6.571 14.131 -2.337 1 55.89 ? C7 MTN 101 A 1 HETATM 11 C C8 MTN . . . B 2 -7.291 17.977 -3.68 1 56.9 ? C8 MTN 101 A 1 HETATM 12 C C9 MTN . . . B 2 -8.508 17.054 -5.655 1 60.45 ? C9 MTN 101 A 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 12 #