data_5BMQ # _model_server_result.job_id JoZG9oeeMRr96xhRXRjkeg _model_server_result.datetime_utc '2024-11-05 00:26:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5bmq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":404}' # _entry.id 5BMQ # _exptl.entry_id 5BMQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5BMQ _cell.length_a 143.356 _cell.length_b 143.356 _cell.length_c 143.356 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5BMQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 199 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 21 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_564 -z+1/2,-x+1,y-1/2 0 0 -1 -1 0 0 0 1 0 71.678 143.356 -71.678 3 'crystal symmetry operation' 10_655 -y+1,z+1/2,-x+1/2 0 -1 0 0 0 1 -1 0 0 143.356 71.678 71.678 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 47 A CYS 107 1_555 A SG CYS 81 A CYS 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf2 A SG CYS 119 A CYS 179 1_555 A SG CYS 129 A CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? covale ? covale1 A C ARG 90 A ARG 150 1_555 A N MSE 91 A MSE 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale2 A C MSE 91 A MSE 151 1_555 A N GLY 92 A GLY 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale3 A C GLY 155 A GLY 215 1_555 A N MSE 156 A MSE 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale4 A C MSE 156 A MSE 216 1_555 A N ALA 157 A ALA 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale5 A C GLU 226 A GLU 286 1_555 A N MSE 227 A MSE 287 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale6 A C GLU 226 A GLU 286 1_555 A N MSE 227 A MSE 287 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale7 A C MSE 227 A MSE 287 1_555 A N LEU 228 A LEU 288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # _atom_sites.entry_id 5BMQ _atom_sites.fract_transf_matrix[1][1] 0.006976 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006976 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006976 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 401 401 SO4 SO4 . C 3 DIO A 1 402 402 DIO DIO . D 2 SO4 A 1 403 1 SO4 SO4 . E 4 GOL A 1 404 1 GOL GOL . F 5 HOH A 1 501 213 HOH HOH . F 5 HOH A 2 502 1 HOH HOH . F 5 HOH A 3 503 58 HOH HOH . F 5 HOH A 4 504 47 HOH HOH . F 5 HOH A 5 505 125 HOH HOH . F 5 HOH A 6 506 147 HOH HOH . F 5 HOH A 7 507 40 HOH HOH . F 5 HOH A 8 508 174 HOH HOH . F 5 HOH A 9 509 216 HOH HOH . F 5 HOH A 10 510 68 HOH HOH . F 5 HOH A 11 511 214 HOH HOH . F 5 HOH A 12 512 82 HOH HOH . F 5 HOH A 13 513 10 HOH HOH . F 5 HOH A 14 514 96 HOH HOH . F 5 HOH A 15 515 85 HOH HOH . F 5 HOH A 16 516 3 HOH HOH . F 5 HOH A 17 517 65 HOH HOH . F 5 HOH A 18 518 61 HOH HOH . F 5 HOH A 19 519 128 HOH HOH . F 5 HOH A 20 520 87 HOH HOH . F 5 HOH A 21 521 35 HOH HOH . F 5 HOH A 22 522 164 HOH HOH . F 5 HOH A 23 523 101 HOH HOH . F 5 HOH A 24 524 107 HOH HOH . F 5 HOH A 25 525 79 HOH HOH . F 5 HOH A 26 526 239 HOH HOH . F 5 HOH A 27 527 201 HOH HOH . F 5 HOH A 28 528 2 HOH HOH . F 5 HOH A 29 529 8 HOH HOH . F 5 HOH A 30 530 4 HOH HOH . F 5 HOH A 31 531 181 HOH HOH . F 5 HOH A 32 532 217 HOH HOH . F 5 HOH A 33 533 25 HOH HOH . F 5 HOH A 34 534 50 HOH HOH . F 5 HOH A 35 535 233 HOH HOH . F 5 HOH A 36 536 11 HOH HOH . F 5 HOH A 37 537 221 HOH HOH . F 5 HOH A 38 538 6 HOH HOH . F 5 HOH A 39 539 18 HOH HOH . F 5 HOH A 40 540 154 HOH HOH . F 5 HOH A 41 541 67 HOH HOH . F 5 HOH A 42 542 76 HOH HOH . F 5 HOH A 43 543 77 HOH HOH . F 5 HOH A 44 544 9 HOH HOH . F 5 HOH A 45 545 72 HOH HOH . F 5 HOH A 46 546 33 HOH HOH . F 5 HOH A 47 547 43 HOH HOH . F 5 HOH A 48 548 195 HOH HOH . F 5 HOH A 49 549 138 HOH HOH . F 5 HOH A 50 550 215 HOH HOH . F 5 HOH A 51 551 13 HOH HOH . F 5 HOH A 52 552 95 HOH HOH . F 5 HOH A 53 553 145 HOH HOH . F 5 HOH A 54 554 218 HOH HOH . F 5 HOH A 55 555 56 HOH HOH . F 5 HOH A 56 556 7 HOH HOH . F 5 HOH A 57 557 38 HOH HOH . F 5 HOH A 58 558 53 HOH HOH . F 5 HOH A 59 559 71 HOH HOH . F 5 HOH A 60 560 37 HOH HOH . F 5 HOH A 61 561 22 HOH HOH . F 5 HOH A 62 562 158 HOH HOH . F 5 HOH A 63 563 113 HOH HOH . F 5 HOH A 64 564 150 HOH HOH . F 5 HOH A 65 565 229 HOH HOH . F 5 HOH A 66 566 186 HOH HOH . F 5 HOH A 67 567 140 HOH HOH . F 5 HOH A 68 568 86 HOH HOH . F 5 HOH A 69 569 98 HOH HOH . F 5 HOH A 70 570 185 HOH HOH . F 5 HOH A 71 571 131 HOH HOH . F 5 HOH A 72 572 81 HOH HOH . F 5 HOH A 73 573 104 HOH HOH . F 5 HOH A 74 574 166 HOH HOH . F 5 HOH A 75 575 136 HOH HOH . F 5 HOH A 76 576 91 HOH HOH . F 5 HOH A 77 577 137 HOH HOH . F 5 HOH A 78 578 149 HOH HOH . F 5 HOH A 79 579 152 HOH HOH . F 5 HOH A 80 580 44 HOH HOH . F 5 HOH A 81 581 41 HOH HOH . F 5 HOH A 82 582 80 HOH HOH . F 5 HOH A 83 583 52 HOH HOH . F 5 HOH A 84 584 163 HOH HOH . F 5 HOH A 85 585 12 HOH HOH . F 5 HOH A 86 586 83 HOH HOH . F 5 HOH A 87 587 90 HOH HOH . F 5 HOH A 88 588 75 HOH HOH . F 5 HOH A 89 589 74 HOH HOH . F 5 HOH A 90 590 60 HOH HOH . F 5 HOH A 91 591 192 HOH HOH . F 5 HOH A 92 592 162 HOH HOH . F 5 HOH A 93 593 31 HOH HOH . F 5 HOH A 94 594 151 HOH HOH . F 5 HOH A 95 595 220 HOH HOH . F 5 HOH A 96 596 94 HOH HOH . F 5 HOH A 97 597 51 HOH HOH . F 5 HOH A 98 598 241 HOH HOH . F 5 HOH A 99 599 39 HOH HOH . F 5 HOH A 100 600 194 HOH HOH . F 5 HOH A 101 601 5 HOH HOH . F 5 HOH A 102 602 172 HOH HOH . F 5 HOH A 103 603 54 HOH HOH . F 5 HOH A 104 604 29 HOH HOH . F 5 HOH A 105 605 169 HOH HOH . F 5 HOH A 106 606 144 HOH HOH . F 5 HOH A 107 607 189 HOH HOH . F 5 HOH A 108 608 132 HOH HOH . F 5 HOH A 109 609 240 HOH HOH . F 5 HOH A 110 610 219 HOH HOH . F 5 HOH A 111 611 64 HOH HOH . F 5 HOH A 112 612 63 HOH HOH . F 5 HOH A 113 613 165 HOH HOH . F 5 HOH A 114 614 48 HOH HOH . F 5 HOH A 115 615 17 HOH HOH . F 5 HOH A 116 616 184 HOH HOH . F 5 HOH A 117 617 69 HOH HOH . F 5 HOH A 118 618 156 HOH HOH . F 5 HOH A 119 619 26 HOH HOH . F 5 HOH A 120 620 59 HOH HOH . F 5 HOH A 121 621 23 HOH HOH . F 5 HOH A 122 622 118 HOH HOH . F 5 HOH A 123 623 49 HOH HOH . F 5 HOH A 124 624 105 HOH HOH . F 5 HOH A 125 625 115 HOH HOH . F 5 HOH A 126 626 210 HOH HOH . F 5 HOH A 127 627 159 HOH HOH . F 5 HOH A 128 628 130 HOH HOH . F 5 HOH A 129 629 175 HOH HOH . F 5 HOH A 130 630 42 HOH HOH . F 5 HOH A 131 631 89 HOH HOH . F 5 HOH A 132 632 55 HOH HOH . F 5 HOH A 133 633 200 HOH HOH . F 5 HOH A 134 634 244 HOH HOH . F 5 HOH A 135 635 15 HOH HOH . F 5 HOH A 136 636 24 HOH HOH . F 5 HOH A 137 637 188 HOH HOH . F 5 HOH A 138 638 45 HOH HOH . F 5 HOH A 139 639 209 HOH HOH . F 5 HOH A 140 640 116 HOH HOH . F 5 HOH A 141 641 143 HOH HOH . F 5 HOH A 142 642 92 HOH HOH . F 5 HOH A 143 643 117 HOH HOH . F 5 HOH A 144 644 180 HOH HOH . F 5 HOH A 145 645 84 HOH HOH . F 5 HOH A 146 646 155 HOH HOH . F 5 HOH A 147 647 157 HOH HOH . F 5 HOH A 148 648 19 HOH HOH . F 5 HOH A 149 649 245 HOH HOH . F 5 HOH A 150 650 170 HOH HOH . F 5 HOH A 151 651 161 HOH HOH . F 5 HOH A 152 652 179 HOH HOH . F 5 HOH A 153 653 121 HOH HOH . F 5 HOH A 154 654 28 HOH HOH . F 5 HOH A 155 655 173 HOH HOH . F 5 HOH A 156 656 21 HOH HOH . F 5 HOH A 157 657 34 HOH HOH . F 5 HOH A 158 658 127 HOH HOH . F 5 HOH A 159 659 123 HOH HOH . F 5 HOH A 160 660 102 HOH HOH . F 5 HOH A 161 661 177 HOH HOH . F 5 HOH A 162 662 196 HOH HOH . F 5 HOH A 163 663 226 HOH HOH . F 5 HOH A 164 664 211 HOH HOH . F 5 HOH A 165 665 110 HOH HOH . F 5 HOH A 166 666 193 HOH HOH . F 5 HOH A 167 667 16 HOH HOH . F 5 HOH A 168 668 109 HOH HOH . F 5 HOH A 169 669 222 HOH HOH . F 5 HOH A 170 670 124 HOH HOH . F 5 HOH A 171 671 224 HOH HOH . F 5 HOH A 172 672 232 HOH HOH . F 5 HOH A 173 673 160 HOH HOH . F 5 HOH A 174 674 20 HOH HOH . F 5 HOH A 175 675 97 HOH HOH . F 5 HOH A 176 676 225 HOH HOH . F 5 HOH A 177 677 103 HOH HOH . F 5 HOH A 178 678 134 HOH HOH . F 5 HOH A 179 679 183 HOH HOH . F 5 HOH A 180 680 36 HOH HOH . F 5 HOH A 181 681 238 HOH HOH . F 5 HOH A 182 682 231 HOH HOH . F 5 HOH A 183 683 135 HOH HOH . F 5 HOH A 184 684 57 HOH HOH . F 5 HOH A 185 685 122 HOH HOH . F 5 HOH A 186 686 73 HOH HOH . F 5 HOH A 187 687 114 HOH HOH . F 5 HOH A 188 688 230 HOH HOH . F 5 HOH A 189 689 30 HOH HOH . F 5 HOH A 190 690 167 HOH HOH . F 5 HOH A 191 691 246 HOH HOH . F 5 HOH A 192 692 205 HOH HOH . F 5 HOH A 193 693 197 HOH HOH . F 5 HOH A 194 694 139 HOH HOH . F 5 HOH A 195 695 206 HOH HOH . F 5 HOH A 196 696 78 HOH HOH . F 5 HOH A 197 697 32 HOH HOH . F 5 HOH A 198 698 176 HOH HOH . F 5 HOH A 199 699 178 HOH HOH . F 5 HOH A 200 700 198 HOH HOH . F 5 HOH A 201 701 204 HOH HOH . F 5 HOH A 202 702 212 HOH HOH . F 5 HOH A 203 703 133 HOH HOH . F 5 HOH A 204 704 203 HOH HOH . F 5 HOH A 205 705 242 HOH HOH . F 5 HOH A 206 706 171 HOH HOH . F 5 HOH A 207 707 182 HOH HOH . F 5 HOH A 208 708 111 HOH HOH . F 5 HOH A 209 709 112 HOH HOH . F 5 HOH A 210 710 108 HOH HOH . F 5 HOH A 211 711 88 HOH HOH . F 5 HOH A 212 712 146 HOH HOH . F 5 HOH A 213 713 235 HOH HOH . F 5 HOH A 214 714 141 HOH HOH . F 5 HOH A 215 715 208 HOH HOH . F 5 HOH A 216 716 202 HOH HOH . F 5 HOH A 217 717 191 HOH HOH . F 5 HOH A 218 718 70 HOH HOH . F 5 HOH A 219 719 228 HOH HOH . F 5 HOH A 220 720 120 HOH HOH . F 5 HOH A 221 721 237 HOH HOH . F 5 HOH A 222 722 119 HOH HOH . F 5 HOH A 223 723 27 HOH HOH . F 5 HOH A 224 724 93 HOH HOH . F 5 HOH A 225 725 126 HOH HOH . F 5 HOH A 226 726 227 HOH HOH . F 5 HOH A 227 727 168 HOH HOH . F 5 HOH A 228 728 129 HOH HOH . F 5 HOH A 229 729 148 HOH HOH . F 5 HOH A 230 730 187 HOH HOH . F 5 HOH A 231 731 207 HOH HOH . F 5 HOH A 232 732 100 HOH HOH . F 5 HOH A 233 733 142 HOH HOH . F 5 HOH A 234 734 153 HOH HOH . F 5 HOH A 235 735 46 HOH HOH . F 5 HOH A 236 736 99 HOH HOH . F 5 HOH A 237 737 66 HOH HOH . F 5 HOH A 238 738 106 HOH HOH . F 5 HOH A 239 739 14 HOH HOH . F 5 HOH A 240 740 243 HOH HOH . F 5 HOH A 241 741 223 HOH HOH . F 5 HOH A 242 742 236 HOH HOH . F 5 HOH A 243 743 199 HOH HOH . F 5 HOH A 244 744 234 HOH HOH . F 5 HOH A 245 745 62 HOH HOH . F 5 HOH A 246 746 190 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 4 44.873 81.614 6.534 1 22.59 ? C1 GOL 404 A 1 HETATM 2 O O1 GOL . . . E 4 45.41 82.937 6.554 1 24.72 ? O1 GOL 404 A 1 HETATM 3 C C2 GOL . . . E 4 43.403 81.68 6.924 1 23.25 ? C2 GOL 404 A 1 HETATM 4 O O2 GOL . . . E 4 42.651 82.354 5.902 1 30.51 ? O2 GOL 404 A 1 HETATM 5 C C3 GOL . . . E 4 42.85 80.277 7.089 1 23.51 ? C3 GOL 404 A 1 HETATM 6 O O3 GOL . . . E 4 41.505 80.395 7.591 1 29.58 ? O3 GOL 404 A 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 247 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #