data_5BMS # _model_server_result.job_id 9SBp7jTHPcgNwS4Bl-LURg _model_server_result.datetime_utc '2025-02-24 19:08:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5bms # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 5BMS # _exptl.entry_id 5BMS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 380.834 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N~2~-[(7-chloro-1H-benzimidazol-6-yl)methyl]-N~4~-(5-cyclopropyl-1H-pyrazol-3-yl)pyrimidine-2,4-diamine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5BMS _cell.length_a 64.412 _cell.length_b 64.412 _cell.length_c 185.146 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5BMS _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LYS 175 A LYS 473 1_555 A N SEP 176 A SEP 474 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C SEP 176 A SEP 474 1_555 A N LEU 177 A LEU 475 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? # _chem_comp.formula 'C18 H17 Cl N8' _chem_comp.formula_weight 380.834 _chem_comp.id 4T6 _chem_comp.mon_nstd_flag . _chem_comp.name N~2~-[(7-chloro-1H-benzimidazol-6-yl)methyl]-N~4~-(5-cyclopropyl-1H-pyrazol-3-yl)pyrimidine-2,4-diamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C12 C11 4T6 doub 1 n y C12 C13 4T6 sing 2 n y N21 C16 4T6 doub 3 n y N21 N19 4T6 sing 4 n y N15 C13 4T6 sing 5 n n N15 C16 4T6 sing 6 n n C11 N10 4T6 sing 7 n y C13 N14 4T6 doub 8 n y C16 C17 4T6 sing 9 n y N19 C18 4T6 sing 10 n y N10 C9 4T6 doub 11 n y N14 C9 4T6 sing 12 n y C17 C18 4T6 doub 13 n y C18 C22 4T6 sing 14 n n C9 N8 4T6 sing 15 n n C22 C24 4T6 sing 16 n n C22 C23 4T6 sing 17 n n N8 C7 4T6 sing 18 n n C24 C23 4T6 sing 19 n n C1 C2 4T6 doub 20 n y C1 C6 4T6 sing 21 n y C7 C6 4T6 sing 22 n n C2 C3 4T6 sing 23 n y C6 C5 4T6 doub 24 n y C3 C4 4T6 doub 25 n y C3 N28 4T6 sing 26 n y C5 C4 4T6 sing 27 n y C5 CL1 4T6 sing 28 n n C4 N26 4T6 sing 29 n y N28 C27 4T6 doub 30 n y N26 C27 4T6 sing 31 n y C7 H1 4T6 sing 32 n n C7 H2 4T6 sing 33 n n C17 H3 4T6 sing 34 n n C22 H4 4T6 sing 35 n n C24 H5 4T6 sing 36 n n C24 H6 4T6 sing 37 n n C1 H7 4T6 sing 38 n n C2 H8 4T6 sing 39 n n N8 H9 4T6 sing 40 n n C11 H10 4T6 sing 41 n n C12 H11 4T6 sing 42 n n N15 H12 4T6 sing 43 n n N19 H13 4T6 sing 44 n n C23 H14 4T6 sing 45 n n C23 H15 4T6 sing 46 n n N26 H16 4T6 sing 47 n n C27 H17 4T6 sing 48 n n # _atom_sites.entry_id 5BMS _atom_sites.fract_transf_matrix[1][1] 0.015525 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015525 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005401 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id 4T6 _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 601 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id 4T6 _pdbx_nonpoly_scheme.auth_mon_id LIG _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 4T6 . . . B 2 -32.463 15.605 -11.279 1 101.99 ? C4 4T6 601 A 1 HETATM 2 C C5 4T6 . . . B 2 -33.317 15.774 -12.38 1 93.56 ? C5 4T6 601 A 1 HETATM 3 C C6 4T6 . . . B 2 -33.954 14.675 -12.932 1 84.14 ? C6 4T6 601 A 1 HETATM 4 C C7 4T6 . . . B 2 -34.878 14.83 -14.117 1 82.12 ? C7 4T6 601 A 1 HETATM 5 C C13 4T6 . . . B 2 -37.059 11.477 -15.201 1 73.74 ? C13 4T6 601 A 1 HETATM 6 C C17 4T6 . . . B 2 -34.072 11.305 -16.249 1 67.51 ? C17 4T6 601 A 1 HETATM 7 C C22 4T6 . . . B 2 -31.705 11.617 -17.193 1 66.66 ? C22 4T6 601 A 1 HETATM 8 C C24 4T6 . . . B 2 -31.611 13.142 -17.264 1 66.46 ? C24 4T6 601 A 1 HETATM 9 C C1 4T6 . . . B 2 -33.744 13.409 -12.402 1 85.61 ? C1 4T6 601 A 1 HETATM 10 C C2 4T6 . . . B 2 -32.906 13.229 -11.32 1 92.96 ? C2 4T6 601 A 1 HETATM 11 C C3 4T6 . . . B 2 -32.259 14.319 -10.748 1 99.8 ? C3 4T6 601 A 1 HETATM 12 N N8 4T6 . . . B 2 -36.285 14.655 -13.728 1 80.09 ? N8 4T6 601 A 1 HETATM 13 C C9 4T6 . . . B 2 -37.003 13.53 -14.122 1 78.87 ? C9 4T6 601 A 1 HETATM 14 N N10 4T6 . . . B 2 -38.287 13.435 -13.797 1 79.55 ? N10 4T6 601 A 1 HETATM 15 C C11 4T6 . . . B 2 -39.008 12.378 -14.15 1 76.38 ? C11 4T6 601 A 1 HETATM 16 C C12 4T6 . . . B 2 -38.412 11.36 -14.867 1 71.05 ? C12 4T6 601 A 1 HETATM 17 N N14 4T6 . . . B 2 -36.399 12.568 -14.811 1 75.69 ? N14 4T6 601 A 1 HETATM 18 N N15 4T6 . . . B 2 -36.45 10.448 -15.923 1 75.99 ? N15 4T6 601 A 1 HETATM 19 C C16 4T6 . . . B 2 -35.189 10.503 -16.559 1 72.82 ? C16 4T6 601 A 1 HETATM 20 C C18 4T6 . . . B 2 -33.082 11.006 -17.129 1 66.09 ? C18 4T6 601 A 1 HETATM 21 N N19 4T6 . . . B 2 -33.538 10.052 -17.96 1 67.92 ? N19 4T6 601 A 1 HETATM 22 N N21 4T6 . . . B 2 -34.85 9.754 -17.581 1 73.21 ? N21 4T6 601 A 1 HETATM 23 C C23 4T6 . . . B 2 -31.217 12.41 -15.978 1 67.78 ? C23 4T6 601 A 1 HETATM 24 CL CL1 4T6 . . . B 2 -33.561 17.369 -13.025 1 180.8 ? CL1 4T6 601 A 1 HETATM 25 N N26 4T6 . . . B 2 -31.716 16.463 -10.531 1 105.67 ? N26 4T6 601 A 1 HETATM 26 C C27 4T6 . . . B 2 -31.086 15.804 -9.603 1 103.11 ? C27 4T6 601 A 1 HETATM 27 N N28 4T6 . . . B 2 -31.384 14.478 -9.689 1 101.08 ? N28 4T6 601 A 1 # _model_server_stats.io_time_ms 33 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 27 #