data_5BNC
#
_model_server_result.job_id            w-3fAb_uvuaGdbx8-BJ2tw 
_model_server_result.datetime_utc      '2024-11-28 07:33:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5bnc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":302}' 
#
_entry.id    5BNC 
#
_exptl.entry_id    5BNC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              58.693 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NICKEL (II) ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5BNC 
_cell.length_a            62.1 
_cell.length_b            62.1 
_cell.length_c            301.406 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5BNC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        169 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 71 A HIS 85 1_555 H NI NI . B NI 302 5_454 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? 
metalc ? metalc2 A NE2 HIS 176 A HIS 190 1_555 C NI NI . A NI 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
metalc ? metalc3 A NE2 HIS 181 A HIS 195 1_555 C NI NI . A NI 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? 
metalc ? metalc4 C NI NI . A NI 301 1_555 K O HOH . A HOH 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? 
metalc ? metalc5 C NI NI . A NI 301 5_564 B ND1 HIS 71 B HIS 85 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
metalc ? metalc6 B O SER 129 B SER 143 1_555 J MG MG . B MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.575 ? 
metalc ? metalc7 B NE2 HIS 176 B HIS 190 1_555 H NI NI . B NI 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? 
metalc ? metalc8 B NE2 HIS 181 B HIS 195 1_555 H NI NI . B NI 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? 
metalc ? metalc9 H NI NI . B NI 302 1_555 L O HOH . B HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.904 ? 
#
_chem_comp.formula           'Ni 2' 
_chem_comp.formula_weight    58.693 
_chem_comp.id                NI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NICKEL (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5BNC 
_atom_sites.fract_transf_matrix[1][1]    0.016103 
_atom_sites.fract_transf_matrix[1][2]    0.009297 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018594 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003318 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NI A 1 301 270 NI NI . 
D 3 EPE A 1 302 272 EPE EPE . 
E 3 EPE A 1 303 271 EPE EPE . 
F 3 EPE A 1 304 272 EPE EPE . 
G 3 EPE B 1 301 271 EPE EPE . 
H 2 NI B 1 302 270 NI NI . 
I 4 SO4 B 1 303 1 SO4 SO4 . 
J 5 MG B 1 304 1 MG MG . 
K 6 HOH A 1 401 178 HOH HOH . 
K 6 HOH A 2 402 179 HOH HOH . 
K 6 HOH A 3 403 317 HOH HOH . 
K 6 HOH A 4 404 145 HOH HOH . 
K 6 HOH A 5 405 201 HOH HOH . 
K 6 HOH A 6 406 66 HOH HOH . 
K 6 HOH A 7 407 5 HOH HOH . 
K 6 HOH A 8 408 122 HOH HOH . 
K 6 HOH A 9 409 104 HOH HOH . 
K 6 HOH A 10 410 357 HOH HOH . 
K 6 HOH A 11 411 311 HOH HOH . 
K 6 HOH A 12 412 35 HOH HOH . 
K 6 HOH A 13 413 316 HOH HOH . 
K 6 HOH A 14 414 14 HOH HOH . 
K 6 HOH A 15 415 71 HOH HOH . 
K 6 HOH A 16 416 92 HOH HOH . 
K 6 HOH A 17 417 281 HOH HOH . 
K 6 HOH A 18 418 261 HOH HOH . 
K 6 HOH A 19 419 120 HOH HOH . 
K 6 HOH A 20 420 350 HOH HOH . 
K 6 HOH A 21 421 37 HOH HOH . 
K 6 HOH A 22 422 146 HOH HOH . 
K 6 HOH A 23 423 220 HOH HOH . 
K 6 HOH A 24 424 345 HOH HOH . 
K 6 HOH A 25 425 61 HOH HOH . 
K 6 HOH A 26 426 21 HOH HOH . 
K 6 HOH A 27 427 242 HOH HOH . 
K 6 HOH A 28 428 20 HOH HOH . 
K 6 HOH A 29 429 141 HOH HOH . 
K 6 HOH A 30 430 119 HOH HOH . 
K 6 HOH A 31 431 42 HOH HOH . 
K 6 HOH A 32 432 195 HOH HOH . 
K 6 HOH A 33 433 85 HOH HOH . 
K 6 HOH A 34 434 110 HOH HOH . 
K 6 HOH A 35 435 290 HOH HOH . 
K 6 HOH A 36 436 77 HOH HOH . 
K 6 HOH A 37 437 328 HOH HOH . 
K 6 HOH A 38 438 274 HOH HOH . 
K 6 HOH A 39 439 369 HOH HOH . 
K 6 HOH A 40 440 133 HOH HOH . 
K 6 HOH A 41 441 101 HOH HOH . 
K 6 HOH A 42 442 19 HOH HOH . 
K 6 HOH A 43 443 312 HOH HOH . 
K 6 HOH A 44 444 283 HOH HOH . 
K 6 HOH A 45 445 286 HOH HOH . 
K 6 HOH A 46 446 302 HOH HOH . 
K 6 HOH A 47 447 73 HOH HOH . 
K 6 HOH A 48 448 294 HOH HOH . 
K 6 HOH A 49 449 99 HOH HOH . 
K 6 HOH A 50 450 58 HOH HOH . 
K 6 HOH A 51 451 54 HOH HOH . 
K 6 HOH A 52 452 165 HOH HOH . 
K 6 HOH A 53 453 315 HOH HOH . 
K 6 HOH A 54 454 197 HOH HOH . 
K 6 HOH A 55 455 160 HOH HOH . 
K 6 HOH A 56 456 139 HOH HOH . 
K 6 HOH A 57 457 291 HOH HOH . 
K 6 HOH A 58 458 252 HOH HOH . 
K 6 HOH A 59 459 218 HOH HOH . 
K 6 HOH A 60 460 86 HOH HOH . 
K 6 HOH A 61 461 306 HOH HOH . 
K 6 HOH A 62 462 205 HOH HOH . 
K 6 HOH A 63 463 327 HOH HOH . 
K 6 HOH A 64 464 320 HOH HOH . 
K 6 HOH A 65 465 296 HOH HOH . 
K 6 HOH A 66 466 163 HOH HOH . 
K 6 HOH A 67 467 158 HOH HOH . 
K 6 HOH A 68 468 352 HOH HOH . 
K 6 HOH A 69 469 168 HOH HOH . 
K 6 HOH A 70 470 251 HOH HOH . 
K 6 HOH A 71 471 347 HOH HOH . 
K 6 HOH A 72 472 63 HOH HOH . 
K 6 HOH A 73 473 285 HOH HOH . 
K 6 HOH A 74 474 279 HOH HOH . 
K 6 HOH A 75 475 244 HOH HOH . 
K 6 HOH A 76 476 200 HOH HOH . 
K 6 HOH A 77 477 278 HOH HOH . 
K 6 HOH A 78 478 103 HOH HOH . 
K 6 HOH A 79 479 170 HOH HOH . 
K 6 HOH A 80 480 39 HOH HOH . 
K 6 HOH A 81 481 209 HOH HOH . 
K 6 HOH A 82 482 74 HOH HOH . 
K 6 HOH A 83 483 106 HOH HOH . 
K 6 HOH A 84 484 124 HOH HOH . 
K 6 HOH A 85 485 162 HOH HOH . 
K 6 HOH A 86 486 319 HOH HOH . 
K 6 HOH A 87 487 247 HOH HOH . 
K 6 HOH A 88 488 368 HOH HOH . 
K 6 HOH A 89 489 56 HOH HOH . 
K 6 HOH A 90 490 293 HOH HOH . 
K 6 HOH A 91 491 355 HOH HOH . 
K 6 HOH A 92 492 173 HOH HOH . 
K 6 HOH A 93 493 349 HOH HOH . 
K 6 HOH A 94 494 308 HOH HOH . 
K 6 HOH A 95 495 287 HOH HOH . 
K 6 HOH A 96 496 255 HOH HOH . 
K 6 HOH A 97 497 116 HOH HOH . 
K 6 HOH A 98 498 157 HOH HOH . 
K 6 HOH A 99 499 105 HOH HOH . 
K 6 HOH A 100 500 174 HOH HOH . 
K 6 HOH A 101 501 354 HOH HOH . 
K 6 HOH A 102 502 284 HOH HOH . 
K 6 HOH A 103 503 78 HOH HOH . 
K 6 HOH A 104 504 206 HOH HOH . 
K 6 HOH A 105 505 166 HOH HOH . 
K 6 HOH A 106 506 304 HOH HOH . 
K 6 HOH A 107 507 289 HOH HOH . 
K 6 HOH A 108 508 68 HOH HOH . 
K 6 HOH A 109 509 299 HOH HOH . 
K 6 HOH A 110 510 57 HOH HOH . 
K 6 HOH A 111 511 318 HOH HOH . 
K 6 HOH A 112 512 292 HOH HOH . 
K 6 HOH A 113 513 91 HOH HOH . 
K 6 HOH A 114 514 303 HOH HOH . 
K 6 HOH A 115 515 223 HOH HOH . 
K 6 HOH A 116 516 342 HOH HOH . 
L 6 HOH B 1 401 282 HOH HOH . 
L 6 HOH B 2 402 121 HOH HOH . 
L 6 HOH B 3 403 224 HOH HOH . 
L 6 HOH B 4 404 181 HOH HOH . 
L 6 HOH B 5 405 113 HOH HOH . 
L 6 HOH B 6 406 351 HOH HOH . 
L 6 HOH B 7 407 114 HOH HOH . 
L 6 HOH B 8 408 288 HOH HOH . 
L 6 HOH B 9 409 80 HOH HOH . 
L 6 HOH B 10 410 38 HOH HOH . 
L 6 HOH B 11 411 123 HOH HOH . 
L 6 HOH B 12 412 276 HOH HOH . 
L 6 HOH B 13 413 97 HOH HOH . 
L 6 HOH B 14 414 245 HOH HOH . 
L 6 HOH B 15 415 208 HOH HOH . 
L 6 HOH B 16 416 258 HOH HOH . 
L 6 HOH B 17 417 118 HOH HOH . 
L 6 HOH B 18 418 191 HOH HOH . 
L 6 HOH B 19 419 172 HOH HOH . 
L 6 HOH B 20 420 196 HOH HOH . 
L 6 HOH B 21 421 69 HOH HOH . 
L 6 HOH B 22 422 135 HOH HOH . 
L 6 HOH B 23 423 183 HOH HOH . 
L 6 HOH B 24 424 300 HOH HOH . 
L 6 HOH B 25 425 202 HOH HOH . 
L 6 HOH B 26 426 150 HOH HOH . 
L 6 HOH B 27 427 18 HOH HOH . 
L 6 HOH B 28 428 363 HOH HOH . 
L 6 HOH B 29 429 50 HOH HOH . 
L 6 HOH B 30 430 10 HOH HOH . 
L 6 HOH B 31 431 295 HOH HOH . 
L 6 HOH B 32 432 67 HOH HOH . 
L 6 HOH B 33 433 346 HOH HOH . 
L 6 HOH B 34 434 33 HOH HOH . 
L 6 HOH B 35 435 137 HOH HOH . 
L 6 HOH B 36 436 8 HOH HOH . 
L 6 HOH B 37 437 65 HOH HOH . 
L 6 HOH B 38 438 136 HOH HOH . 
L 6 HOH B 39 439 90 HOH HOH . 
L 6 HOH B 40 440 273 HOH HOH . 
L 6 HOH B 41 441 148 HOH HOH . 
L 6 HOH B 42 442 138 HOH HOH . 
L 6 HOH B 43 443 64 HOH HOH . 
L 6 HOH B 44 444 82 HOH HOH . 
L 6 HOH B 45 445 45 HOH HOH . 
L 6 HOH B 46 446 367 HOH HOH . 
L 6 HOH B 47 447 49 HOH HOH . 
L 6 HOH B 48 448 372 HOH HOH . 
L 6 HOH B 49 449 277 HOH HOH . 
L 6 HOH B 50 450 87 HOH HOH . 
L 6 HOH B 51 451 210 HOH HOH . 
L 6 HOH B 52 452 193 HOH HOH . 
L 6 HOH B 53 453 340 HOH HOH . 
L 6 HOH B 54 454 125 HOH HOH . 
L 6 HOH B 55 455 161 HOH HOH . 
L 6 HOH B 56 456 98 HOH HOH . 
L 6 HOH B 57 457 272 HOH HOH . 
L 6 HOH B 58 458 24 HOH HOH . 
L 6 HOH B 59 459 204 HOH HOH . 
L 6 HOH B 60 460 76 HOH HOH . 
L 6 HOH B 61 461 154 HOH HOH . 
L 6 HOH B 62 462 130 HOH HOH . 
L 6 HOH B 63 463 266 HOH HOH . 
L 6 HOH B 64 464 55 HOH HOH . 
L 6 HOH B 65 465 359 HOH HOH . 
L 6 HOH B 66 466 180 HOH HOH . 
L 6 HOH B 67 467 88 HOH HOH . 
L 6 HOH B 68 468 198 HOH HOH . 
L 6 HOH B 69 469 362 HOH HOH . 
L 6 HOH B 70 470 314 HOH HOH . 
L 6 HOH B 71 471 13 HOH HOH . 
L 6 HOH B 72 472 310 HOH HOH . 
L 6 HOH B 73 473 339 HOH HOH . 
L 6 HOH B 74 474 325 HOH HOH . 
L 6 HOH B 75 475 344 HOH HOH . 
L 6 HOH B 76 476 188 HOH HOH . 
L 6 HOH B 77 477 335 HOH HOH . 
L 6 HOH B 78 478 187 HOH HOH . 
L 6 HOH B 79 479 366 HOH HOH . 
L 6 HOH B 80 480 238 HOH HOH . 
L 6 HOH B 81 481 152 HOH HOH . 
L 6 HOH B 82 482 199 HOH HOH . 
L 6 HOH B 83 483 27 HOH HOH . 
L 6 HOH B 84 484 17 HOH HOH . 
L 6 HOH B 85 485 48 HOH HOH . 
L 6 HOH B 86 486 175 HOH HOH . 
L 6 HOH B 87 487 337 HOH HOH . 
L 6 HOH B 88 488 298 HOH HOH . 
L 6 HOH B 89 489 267 HOH HOH . 
L 6 HOH B 90 490 62 HOH HOH . 
L 6 HOH B 91 491 95 HOH HOH . 
L 6 HOH B 92 492 41 HOH HOH . 
L 6 HOH B 93 493 269 HOH HOH . 
L 6 HOH B 94 494 126 HOH HOH . 
L 6 HOH B 95 495 44 HOH HOH . 
L 6 HOH B 96 496 214 HOH HOH . 
L 6 HOH B 97 497 149 HOH HOH . 
L 6 HOH B 98 498 151 HOH HOH . 
L 6 HOH B 99 499 75 HOH HOH . 
L 6 HOH B 100 500 270 HOH HOH . 
L 6 HOH B 101 501 370 HOH HOH . 
L 6 HOH B 102 502 34 HOH HOH . 
L 6 HOH B 103 503 111 HOH HOH . 
L 6 HOH B 104 504 271 HOH HOH . 
L 6 HOH B 105 505 52 HOH HOH . 
L 6 HOH B 106 506 127 HOH HOH . 
L 6 HOH B 107 507 102 HOH HOH . 
L 6 HOH B 108 508 70 HOH HOH . 
L 6 HOH B 109 509 194 HOH HOH . 
L 6 HOH B 110 510 280 HOH HOH . 
L 6 HOH B 111 511 275 HOH HOH . 
L 6 HOH B 112 512 253 HOH HOH . 
L 6 HOH B 113 513 131 HOH HOH . 
L 6 HOH B 114 514 323 HOH HOH . 
L 6 HOH B 115 515 32 HOH HOH . 
L 6 HOH B 116 516 330 HOH HOH . 
L 6 HOH B 117 517 216 HOH HOH . 
L 6 HOH B 118 518 321 HOH HOH . 
L 6 HOH B 119 519 186 HOH HOH . 
L 6 HOH B 120 520 143 HOH HOH . 
L 6 HOH B 121 521 268 HOH HOH . 
L 6 HOH B 122 522 322 HOH HOH . 
L 6 HOH B 123 523 171 HOH HOH . 
L 6 HOH B 124 524 134 HOH HOH . 
L 6 HOH B 125 525 254 HOH HOH . 
L 6 HOH B 126 526 305 HOH HOH . 
L 6 HOH B 127 527 189 HOH HOH . 
L 6 HOH B 128 528 211 HOH HOH . 
L 6 HOH B 129 529 246 HOH HOH . 
L 6 HOH B 130 530 212 HOH HOH . 
L 6 HOH B 131 531 43 HOH HOH . 
L 6 HOH B 132 532 338 HOH HOH . 
L 6 HOH B 133 533 219 HOH HOH . 
L 6 HOH B 134 534 341 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NI 
_atom_site.label_atom_id         NI 
_atom_site.label_comp_id         NI 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         H 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               -5.755 
_atom_site.Cartn_y               64.298 
_atom_site.Cartn_z               42.178 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        28.72 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NI 
_atom_site.auth_comp_id          NI 
_atom_site.auth_seq_id           302 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           306 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#