data_5BNJ # _model_server_result.job_id T8_IlS2LiIIc8leEGyZnAw _model_server_result.datetime_utc '2025-01-08 20:36:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5bnj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 5BNJ # _exptl.entry_id 5BNJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 46.025 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FORMIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5BNJ _cell.length_a 70.787 _cell.length_b 71.489 _cell.length_c 172.532 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5BNJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # _chem_comp.formula 'C H2 O2' _chem_comp.formula_weight 46.025 _chem_comp.id FMT _chem_comp.mon_nstd_flag . _chem_comp.name 'FORMIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O1 FMT doub 141 n n C O2 FMT sing 142 n n C H FMT sing 143 n n O2 HO2 FMT sing 144 n n # _atom_sites.entry_id 5BNJ _atom_sites.fract_transf_matrix[1][1] 0.014127 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013988 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005796 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 4TV A 1 501 1 4TV INX . D 4 FMT B 1 301 1 FMT FMT . E 4 FMT B 1 302 2 FMT FMT . F 5 HOH A 1 601 35 HOH HOH . F 5 HOH A 2 602 8 HOH HOH . F 5 HOH A 3 603 56 HOH HOH . F 5 HOH A 4 604 41 HOH HOH . F 5 HOH A 5 605 7 HOH HOH . F 5 HOH A 6 606 55 HOH HOH . F 5 HOH A 7 607 33 HOH HOH . F 5 HOH A 8 608 3 HOH HOH . F 5 HOH A 9 609 20 HOH HOH . F 5 HOH A 10 610 32 HOH HOH . F 5 HOH A 11 611 6 HOH HOH . F 5 HOH A 12 612 11 HOH HOH . F 5 HOH A 13 613 51 HOH HOH . F 5 HOH A 14 614 2 HOH HOH . F 5 HOH A 15 615 34 HOH HOH . F 5 HOH A 16 616 21 HOH HOH . F 5 HOH A 17 617 54 HOH HOH . F 5 HOH A 18 618 5 HOH HOH . F 5 HOH A 19 619 30 HOH HOH . F 5 HOH A 20 620 53 HOH HOH . F 5 HOH A 21 621 1 HOH HOH . F 5 HOH A 22 622 18 HOH HOH . F 5 HOH A 23 623 29 HOH HOH . F 5 HOH A 24 624 4 HOH HOH . F 5 HOH A 25 625 28 HOH HOH . F 5 HOH A 26 626 19 HOH HOH . F 5 HOH A 27 627 31 HOH HOH . F 5 HOH A 28 628 9 HOH HOH . F 5 HOH A 29 629 17 HOH HOH . G 5 HOH B 1 401 38 HOH HOH . G 5 HOH B 2 402 14 HOH HOH . G 5 HOH B 3 403 47 HOH HOH . G 5 HOH B 4 404 39 HOH HOH . G 5 HOH B 5 405 57 HOH HOH . G 5 HOH B 6 406 37 HOH HOH . G 5 HOH B 7 407 44 HOH HOH . G 5 HOH B 8 408 22 HOH HOH . G 5 HOH B 9 409 26 HOH HOH . G 5 HOH B 10 410 27 HOH HOH . G 5 HOH B 11 411 45 HOH HOH . G 5 HOH B 12 412 52 HOH HOH . G 5 HOH B 13 413 36 HOH HOH . G 5 HOH B 14 414 42 HOH HOH . G 5 HOH B 15 415 43 HOH HOH . G 5 HOH B 16 416 23 HOH HOH . G 5 HOH B 17 417 16 HOH HOH . G 5 HOH B 18 418 13 HOH HOH . G 5 HOH B 19 419 24 HOH HOH . G 5 HOH B 20 420 48 HOH HOH . G 5 HOH B 21 421 49 HOH HOH . G 5 HOH B 22 422 40 HOH HOH . G 5 HOH B 23 423 46 HOH HOH . G 5 HOH B 24 424 12 HOH HOH . G 5 HOH B 25 425 50 HOH HOH . G 5 HOH B 26 426 25 HOH HOH . G 5 HOH B 27 427 15 HOH HOH . G 5 HOH B 28 428 10 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C FMT . . . D 4 35.996 79.662 65.673 1 61.74 ? C FMT 301 B 1 HETATM 2 O O1 FMT . . . D 4 35.223 78.787 66.061 1 61.29 ? O1 FMT 301 B 1 HETATM 3 O O2 FMT . . . D 4 36.837 79.445 64.801 1 61.87 ? O2 FMT 301 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 3 #