data_5BOJ # _model_server_result.job_id AZzJJvgR87rWES4Zuq2-5Q _model_server_result.datetime_utc '2024-11-04 22:47:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5boj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":202}' # _entry.id 5BOJ # _exptl.entry_id 5BOJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5BOJ _cell.length_a 42.685 _cell.length_b 85.409 _cell.length_c 63.624 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5BOJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G 1 1 A,B,C,D,E,F,G 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ASP 99 A ASP 99 1_555 D NA NA . A NA 202 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc2 A O ASP 99 A ASP 99 1_555 D NA NA . A NA 202 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc3 A OD1 ASP 99 A ASP 99 1_555 D NA NA . A NA 202 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.705 ? metalc ? metalc4 D NA NA . A NA 202 1_555 F O HOH . A HOH 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.569 ? metalc ? metalc5 D NA NA . A NA 202 1_555 F O HOH . A HOH 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.187 ? metalc ? metalc6 D NA NA . A NA 202 1_555 F O HOH . A HOH 357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc7 D NA NA . A NA 202 1_555 F O HOH . A HOH 367 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5BOJ _atom_sites.fract_transf_matrix[1][1] 0.023427 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011708 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015717 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 4TX A 1 201 201 4TX 4TX . D 3 NA A 1 202 202 NA NA . E 2 4TX B 1 201 201 4TX 4TX . F 4 HOH A 1 301 301 HOH HOH . F 4 HOH A 2 302 302 HOH HOH . F 4 HOH A 3 303 303 HOH HOH . F 4 HOH A 4 304 304 HOH HOH . F 4 HOH A 5 305 305 HOH HOH . F 4 HOH A 6 306 306 HOH HOH . F 4 HOH A 7 307 307 HOH HOH . F 4 HOH A 8 308 308 HOH HOH . F 4 HOH A 9 309 309 HOH HOH . F 4 HOH A 10 310 310 HOH HOH . F 4 HOH A 11 311 311 HOH HOH . F 4 HOH A 12 312 312 HOH HOH . F 4 HOH A 13 313 313 HOH HOH . F 4 HOH A 14 314 314 HOH HOH . F 4 HOH A 15 315 315 HOH HOH . F 4 HOH A 16 316 316 HOH HOH . F 4 HOH A 17 317 317 HOH HOH . F 4 HOH A 18 318 318 HOH HOH . F 4 HOH A 19 319 319 HOH HOH . F 4 HOH A 20 320 320 HOH HOH . F 4 HOH A 21 321 321 HOH HOH . F 4 HOH A 22 322 322 HOH HOH . F 4 HOH A 23 323 323 HOH HOH . F 4 HOH A 24 324 324 HOH HOH . F 4 HOH A 25 325 325 HOH HOH . F 4 HOH A 26 326 326 HOH HOH . F 4 HOH A 27 327 327 HOH HOH . F 4 HOH A 28 328 328 HOH HOH . F 4 HOH A 29 329 329 HOH HOH . F 4 HOH A 30 330 330 HOH HOH . F 4 HOH A 31 331 331 HOH HOH . F 4 HOH A 32 332 332 HOH HOH . F 4 HOH A 33 333 333 HOH HOH . F 4 HOH A 34 334 334 HOH HOH . F 4 HOH A 35 335 335 HOH HOH . F 4 HOH A 36 336 336 HOH HOH . F 4 HOH A 37 337 337 HOH HOH . F 4 HOH A 38 338 338 HOH HOH . F 4 HOH A 39 339 339 HOH HOH . F 4 HOH A 40 340 340 HOH HOH . F 4 HOH A 41 341 341 HOH HOH . F 4 HOH A 42 342 342 HOH HOH . F 4 HOH A 43 343 343 HOH HOH . F 4 HOH A 44 344 344 HOH HOH . F 4 HOH A 45 345 345 HOH HOH . F 4 HOH A 46 346 346 HOH HOH . F 4 HOH A 47 347 347 HOH HOH . F 4 HOH A 48 348 348 HOH HOH . F 4 HOH A 49 349 349 HOH HOH . F 4 HOH A 50 350 350 HOH HOH . F 4 HOH A 51 351 351 HOH HOH . F 4 HOH A 52 352 352 HOH HOH . F 4 HOH A 53 353 353 HOH HOH . F 4 HOH A 54 354 354 HOH HOH . F 4 HOH A 55 355 355 HOH HOH . F 4 HOH A 56 356 356 HOH HOH . F 4 HOH A 57 357 357 HOH HOH . F 4 HOH A 58 358 358 HOH HOH . F 4 HOH A 59 359 359 HOH HOH . F 4 HOH A 60 360 360 HOH HOH . F 4 HOH A 61 361 361 HOH HOH . F 4 HOH A 62 362 362 HOH HOH . F 4 HOH A 63 363 363 HOH HOH . F 4 HOH A 64 364 364 HOH HOH . F 4 HOH A 65 365 365 HOH HOH . F 4 HOH A 66 366 366 HOH HOH . F 4 HOH A 67 367 367 HOH HOH . F 4 HOH A 68 368 368 HOH HOH . F 4 HOH A 69 369 369 HOH HOH . F 4 HOH A 70 370 370 HOH HOH . F 4 HOH A 71 371 371 HOH HOH . F 4 HOH A 72 372 372 HOH HOH . F 4 HOH A 73 373 373 HOH HOH . F 4 HOH A 74 374 374 HOH HOH . F 4 HOH A 75 375 375 HOH HOH . F 4 HOH A 76 376 376 HOH HOH . F 4 HOH A 77 377 377 HOH HOH . F 4 HOH A 78 378 378 HOH HOH . F 4 HOH A 79 379 379 HOH HOH . F 4 HOH A 80 380 380 HOH HOH . F 4 HOH A 81 381 381 HOH HOH . F 4 HOH A 82 382 382 HOH HOH . F 4 HOH A 83 383 383 HOH HOH . F 4 HOH A 84 384 384 HOH HOH . F 4 HOH A 85 385 385 HOH HOH . F 4 HOH A 86 386 386 HOH HOH . F 4 HOH A 87 387 387 HOH HOH . F 4 HOH A 88 388 388 HOH HOH . F 4 HOH A 89 389 389 HOH HOH . F 4 HOH A 90 390 390 HOH HOH . F 4 HOH A 91 391 391 HOH HOH . F 4 HOH A 92 392 392 HOH HOH . F 4 HOH A 93 393 393 HOH HOH . F 4 HOH A 94 394 394 HOH HOH . F 4 HOH A 95 395 395 HOH HOH . F 4 HOH A 96 396 396 HOH HOH . F 4 HOH A 97 397 397 HOH HOH . F 4 HOH A 98 398 398 HOH HOH . F 4 HOH A 99 399 399 HOH HOH . F 4 HOH A 100 400 400 HOH HOH . F 4 HOH A 101 401 401 HOH HOH . F 4 HOH A 102 402 402 HOH HOH . F 4 HOH A 103 403 403 HOH HOH . F 4 HOH A 104 404 404 HOH HOH . F 4 HOH A 105 405 405 HOH HOH . F 4 HOH A 106 406 406 HOH HOH . F 4 HOH A 107 407 407 HOH HOH . F 4 HOH A 108 408 408 HOH HOH . F 4 HOH A 109 409 409 HOH HOH . F 4 HOH A 110 410 410 HOH HOH . F 4 HOH A 111 411 411 HOH HOH . F 4 HOH A 112 412 412 HOH HOH . F 4 HOH A 113 413 413 HOH HOH . F 4 HOH A 114 414 414 HOH HOH . F 4 HOH A 115 415 415 HOH HOH . F 4 HOH A 116 416 416 HOH HOH . F 4 HOH A 117 417 417 HOH HOH . F 4 HOH A 118 418 418 HOH HOH . F 4 HOH A 119 419 419 HOH HOH . F 4 HOH A 120 420 420 HOH HOH . F 4 HOH A 121 421 421 HOH HOH . F 4 HOH A 122 422 422 HOH HOH . F 4 HOH A 123 423 423 HOH HOH . F 4 HOH A 124 424 424 HOH HOH . F 4 HOH A 125 425 425 HOH HOH . G 4 HOH B 1 301 301 HOH HOH . G 4 HOH B 2 302 302 HOH HOH . G 4 HOH B 3 303 303 HOH HOH . G 4 HOH B 4 304 304 HOH HOH . G 4 HOH B 5 305 305 HOH HOH . G 4 HOH B 6 306 306 HOH HOH . G 4 HOH B 7 307 307 HOH HOH . G 4 HOH B 8 308 308 HOH HOH . G 4 HOH B 9 309 309 HOH HOH . G 4 HOH B 10 310 310 HOH HOH . G 4 HOH B 11 311 311 HOH HOH . G 4 HOH B 12 312 312 HOH HOH . G 4 HOH B 13 313 313 HOH HOH . G 4 HOH B 14 314 314 HOH HOH . G 4 HOH B 15 315 315 HOH HOH . G 4 HOH B 16 316 316 HOH HOH . G 4 HOH B 17 317 317 HOH HOH . G 4 HOH B 18 318 318 HOH HOH . G 4 HOH B 19 319 319 HOH HOH . G 4 HOH B 20 320 320 HOH HOH . G 4 HOH B 21 321 321 HOH HOH . G 4 HOH B 22 322 322 HOH HOH . G 4 HOH B 23 323 323 HOH HOH . G 4 HOH B 24 324 324 HOH HOH . G 4 HOH B 25 325 325 HOH HOH . G 4 HOH B 26 326 326 HOH HOH . G 4 HOH B 27 327 327 HOH HOH . G 4 HOH B 28 328 328 HOH HOH . G 4 HOH B 29 329 329 HOH HOH . G 4 HOH B 30 330 330 HOH HOH . G 4 HOH B 31 331 331 HOH HOH . G 4 HOH B 32 332 334 HOH HOH . G 4 HOH B 33 333 332 HOH HOH . G 4 HOH B 34 334 333 HOH HOH . G 4 HOH B 35 335 335 HOH HOH . G 4 HOH B 36 336 336 HOH HOH . G 4 HOH B 37 337 337 HOH HOH . G 4 HOH B 38 338 338 HOH HOH . G 4 HOH B 39 339 339 HOH HOH . G 4 HOH B 40 340 340 HOH HOH . G 4 HOH B 41 341 341 HOH HOH . G 4 HOH B 42 342 342 HOH HOH . G 4 HOH B 43 343 343 HOH HOH . G 4 HOH B 44 344 344 HOH HOH . G 4 HOH B 45 345 345 HOH HOH . G 4 HOH B 46 346 346 HOH HOH . G 4 HOH B 47 347 347 HOH HOH . G 4 HOH B 48 348 348 HOH HOH . G 4 HOH B 49 349 349 HOH HOH . G 4 HOH B 50 350 350 HOH HOH . G 4 HOH B 51 351 351 HOH HOH . G 4 HOH B 52 352 352 HOH HOH . G 4 HOH B 53 353 353 HOH HOH . G 4 HOH B 54 354 354 HOH HOH . G 4 HOH B 55 355 355 HOH HOH . G 4 HOH B 56 356 356 HOH HOH . G 4 HOH B 57 357 357 HOH HOH . G 4 HOH B 58 358 358 HOH HOH . G 4 HOH B 59 359 360 HOH HOH . G 4 HOH B 60 360 359 HOH HOH . G 4 HOH B 61 361 361 HOH HOH . G 4 HOH B 62 362 362 HOH HOH . G 4 HOH B 63 363 363 HOH HOH . G 4 HOH B 64 364 364 HOH HOH . G 4 HOH B 65 365 365 HOH HOH . G 4 HOH B 66 366 366 HOH HOH . G 4 HOH B 67 367 367 HOH HOH . G 4 HOH B 68 368 368 HOH HOH . G 4 HOH B 69 369 369 HOH HOH . G 4 HOH B 70 370 370 HOH HOH . G 4 HOH B 71 371 371 HOH HOH . G 4 HOH B 72 372 372 HOH HOH . G 4 HOH B 73 373 373 HOH HOH . G 4 HOH B 74 374 374 HOH HOH . G 4 HOH B 75 375 375 HOH HOH . G 4 HOH B 76 376 376 HOH HOH . G 4 HOH B 77 377 377 HOH HOH . G 4 HOH B 78 378 378 HOH HOH . G 4 HOH B 79 379 379 HOH HOH . G 4 HOH B 80 380 380 HOH HOH . G 4 HOH B 81 381 381 HOH HOH . G 4 HOH B 82 382 382 HOH HOH . G 4 HOH B 83 383 383 HOH HOH . G 4 HOH B 84 384 384 HOH HOH . G 4 HOH B 85 385 385 HOH HOH . G 4 HOH B 86 386 386 HOH HOH . G 4 HOH B 87 387 387 HOH HOH . G 4 HOH B 88 388 388 HOH HOH . G 4 HOH B 89 389 389 HOH HOH . G 4 HOH B 90 390 390 HOH HOH . G 4 HOH B 91 391 391 HOH HOH . G 4 HOH B 92 392 392 HOH HOH . G 4 HOH B 93 393 393 HOH HOH . G 4 HOH B 94 394 394 HOH HOH . G 4 HOH B 95 395 395 HOH HOH . G 4 HOH B 96 396 396 HOH HOH . G 4 HOH B 97 397 397 HOH HOH . G 4 HOH B 98 398 398 HOH HOH . G 4 HOH B 99 399 399 HOH HOH . G 4 HOH B 100 400 400 HOH HOH . G 4 HOH B 101 401 401 HOH HOH . G 4 HOH B 102 402 402 HOH HOH . G 4 HOH B 103 403 403 HOH HOH . G 4 HOH B 104 404 404 HOH HOH . G 4 HOH B 105 405 405 HOH HOH . G 4 HOH B 106 406 406 HOH HOH . G 4 HOH B 107 407 407 HOH HOH . G 4 HOH B 108 408 408 HOH HOH . G 4 HOH B 109 409 409 HOH HOH . G 4 HOH B 110 410 410 HOH HOH . G 4 HOH B 111 411 411 HOH HOH . G 4 HOH B 112 412 412 HOH HOH . G 4 HOH B 113 413 413 HOH HOH . G 4 HOH B 114 414 414 HOH HOH . G 4 HOH B 115 415 415 HOH HOH . G 4 HOH B 116 416 416 HOH HOH . G 4 HOH B 117 417 417 HOH HOH . G 4 HOH B 118 418 418 HOH HOH . G 4 HOH B 119 419 419 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 22.675 _atom_site.Cartn_y 17.588 _atom_site.Cartn_z 4.29 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 45.69 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 202 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #