data_5BOO
#
_model_server_result.job_id            EuKCxwf5DpLbQtZ-wLjaEA 
_model_server_result.datetime_utc      '2024-10-19 20:11:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5boo 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1002}' 
#
_entry.id    5BOO 
#
_exptl.entry_id    5BOO 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              456.344 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN MONONUCLEOTIDE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5BOO 
_cell.length_a            89.257 
_cell.length_b            89.257 
_cell.length_c            275.61 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5BOO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        170 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E 1 1 
B,F,G,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 G N N 
#
_chem_comp.formula           'C17 H21 N4 O9 P' 
_chem_comp.formula_weight    456.344 
_chem_comp.id                FMN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN MONONUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'RIBOFLAVIN MONOPHOSPHATE' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 FMN sing 124 n n 
N1 C10 FMN doub 125 n n 
C2 O2 FMN doub 126 n n 
C2 N3 FMN sing 127 n n 
N3 C4 FMN sing 128 n n 
N3 HN3 FMN sing 129 n n 
C4 O4 FMN doub 130 n n 
C4 C4A FMN sing 131 n n 
C4A N5 FMN doub 132 n n 
C4A C10 FMN sing 133 n n 
N5 C5A FMN sing 134 n n 
C5A C6 FMN doub 135 n y 
C5A C9A FMN sing 136 n y 
C6 C7 FMN sing 137 n y 
C6 H6 FMN sing 138 n n 
C7 C7M FMN sing 139 n n 
C7 C8 FMN doub 140 n y 
C7M HM71 FMN sing 141 n n 
C7M HM72 FMN sing 142 n n 
C7M HM73 FMN sing 143 n n 
C8 C8M FMN sing 144 n n 
C8 C9 FMN sing 145 n y 
C8M HM81 FMN sing 146 n n 
C8M HM82 FMN sing 147 n n 
C8M HM83 FMN sing 148 n n 
C9 C9A FMN doub 149 n y 
C9 H9 FMN sing 150 n n 
C9A N10 FMN sing 151 n n 
N10 C10 FMN sing 152 n n 
N10 C1' FMN sing 153 n n 
C1' C2' FMN sing 154 n n 
C1' "H1'1" FMN sing 155 n n 
C1' "H1'2" FMN sing 156 n n 
C2' O2' FMN sing 157 n n 
C2' C3' FMN sing 158 n n 
C2' H2' FMN sing 159 n n 
O2' HO2' FMN sing 160 n n 
C3' O3' FMN sing 161 n n 
C3' C4' FMN sing 162 n n 
C3' H3' FMN sing 163 n n 
O3' HO3' FMN sing 164 n n 
C4' O4' FMN sing 165 n n 
C4' C5' FMN sing 166 n n 
C4' H4' FMN sing 167 n n 
O4' HO4' FMN sing 168 n n 
C5' O5' FMN sing 169 n n 
C5' "H5'1" FMN sing 170 n n 
C5' "H5'2" FMN sing 171 n n 
O5' P FMN sing 172 n n 
P O1P FMN doub 173 n n 
P O2P FMN sing 174 n n 
P O3P FMN sing 175 n n 
O2P HOP2 FMN sing 176 n n 
O3P HOP3 FMN sing 177 n n 
#
_atom_sites.entry_id                     5BOO 
_atom_sites.fract_transf_matrix[1][1]    0.011204 
_atom_sites.fract_transf_matrix[1][2]    0.006468 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012937 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003628 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 D65 A 1 1001 1001 D65 D65 . 
D 3 FMN A 1 1002 1002 FMN FMN . 
E 4 ORO A 1 1003 1003 ORO ORO . 
F 2 D65 B 1 1001 1001 D65 D65 . 
G 3 FMN B 1 1002 1002 FMN FMN . 
H 4 ORO B 1 1003 1003 ORO ORO . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 FMN . . . D 3 -18.214 -8.629 -3.5 1 9.62 ? N1 FMN 1002 A 1 
HETATM 2 C C2 FMN . . . D 3 -17.553 -7.63 -2.814 1 11.19 ? C2 FMN 1002 A 1 
HETATM 3 O O2 FMN . . . D 3 -17.326 -7.764 -1.612 1 13.95 ? O2 FMN 1002 A 1 
HETATM 4 N N3 FMN . . . D 3 -17.151 -6.485 -3.467 1 9.91 ? N3 FMN 1002 A 1 
HETATM 5 C C4 FMN . . . D 3 -17.41 -6.34 -4.815 1 10.72 ? C4 FMN 1002 A 1 
HETATM 6 O O4 FMN . . . D 3 -17.051 -5.317 -5.402 1 10.62 ? O4 FMN 1002 A 1 
HETATM 7 C C4A FMN . . . D 3 -18.072 -7.35 -5.507 1 12.29 ? C4A FMN 1002 A 1 
HETATM 8 N N5 FMN . . . D 3 -18.327 -7.209 -6.854 1 17.51 ? N5 FMN 1002 A 1 
HETATM 9 C C5A FMN . . . D 3 -18.993 -8.208 -7.537 1 18.91 ? C5A FMN 1002 A 1 
HETATM 10 C C6 FMN . . . D 3 -19.249 -8.042 -8.896 1 20.19 ? C6 FMN 1002 A 1 
HETATM 11 C C7 FMN . . . D 3 -19.914 -9.03 -9.615 1 18.53 ? C7 FMN 1002 A 1 
HETATM 12 C C7M FMN . . . D 3 -20.165 -8.813 -11.084 1 19.5 ? C7M FMN 1002 A 1 
HETATM 13 C C8 FMN . . . D 3 -20.32 -10.185 -8.958 1 17.52 ? C8 FMN 1002 A 1 
HETATM 14 C C8M FMN . . . D 3 -21.038 -11.275 -9.694 1 20.79 ? C8M FMN 1002 A 1 
HETATM 15 C C9 FMN . . . D 3 -20.069 -10.352 -7.601 1 15.06 ? C9 FMN 1002 A 1 
HETATM 16 C C9A FMN . . . D 3 -19.402 -9.366 -6.875 1 14.64 ? C9A FMN 1002 A 1 
HETATM 17 N N10 FMN . . . D 3 -19.145 -9.508 -5.518 1 10.4 ? N10 FMN 1002 A 1 
HETATM 18 C C10 FMN . . . D 3 -18.477 -8.501 -4.845 1 9.43 ? C10 FMN 1002 A 1 
HETATM 19 C C1' FMN . . . D 3 -19.552 -10.749 -4.76 1 11.1 ? C1' FMN 1002 A 1 
HETATM 20 C C2' FMN . . . D 3 -20.958 -10.644 -4.171 1 12.85 ? C2' FMN 1002 A 1 
HETATM 21 O O2' FMN . . . D 3 -20.972 -9.648 -3.176 1 10.17 ? O2' FMN 1002 A 1 
HETATM 22 C C3' FMN . . . D 3 -21.41 -11.948 -3.516 1 17.37 ? C3' FMN 1002 A 1 
HETATM 23 O O3' FMN . . . D 3 -20.635 -12.175 -2.358 1 19.22 ? O3' FMN 1002 A 1 
HETATM 24 C C4' FMN . . . D 3 -21.293 -13.148 -4.452 1 20.09 ? C4' FMN 1002 A 1 
HETATM 25 O O4' FMN . . . D 3 -21.731 -12.792 -5.744 1 22.57 ? O4' FMN 1002 A 1 
HETATM 26 C C5' FMN . . . D 3 -22.112 -14.335 -3.966 1 20.49 ? C5' FMN 1002 A 1 
HETATM 27 O O5' FMN . . . D 3 -23.479 -13.994 -3.963 1 21.62 ? O5' FMN 1002 A 1 
HETATM 28 P P FMN . . . D 3 -24.541 -14.858 -4.812 1 28.92 ? P FMN 1002 A 1 
HETATM 29 O O1P FMN . . . D 3 -24.549 -14.312 -6.221 1 21.3 ? O1P FMN 1002 A 1 
HETATM 30 O O2P FMN . . . D 3 -25.915 -14.729 -4.192 1 35.31 ? O2P FMN 1002 A 1 
HETATM 31 O O3P FMN . . . D 3 -24.135 -16.314 -4.851 1 27.86 ? O3P FMN 1002 A 1 
HETATM 32 H HN3 FMN . . . D 3 -16.739 -5.697 -2.929 1 11.9 ? HN3 FMN 1002 A 1 
HETATM 33 H H6 FMN . . . D 3 -18.926 -7.131 -9.4 1 24.23 ? H6 FMN 1002 A 1 
HETATM 34 H HM71 FMN . . . D 3 -20.688 -9.676 -11.495 1 23.4 ? HM71 FMN 1002 A 1 
HETATM 35 H HM72 FMN . . . D 3 -19.214 -8.685 -11.6 1 23.4 ? HM72 FMN 1002 A 1 
HETATM 36 H HM73 FMN . . . D 3 -20.775 -7.92 -11.22 1 23.4 ? HM73 FMN 1002 A 1 
HETATM 37 H HM81 FMN . . . D 3 -21.27 -12.087 -9.005 1 24.95 ? HM81 FMN 1002 A 1 
HETATM 38 H HM82 FMN . . . D 3 -20.404 -11.65 -10.497 1 24.95 ? HM82 FMN 1002 A 1 
HETATM 39 H HM83 FMN . . . D 3 -21.963 -10.88 -10.115 1 24.95 ? HM83 FMN 1002 A 1 
HETATM 40 H H9 FMN . . . D 3 -20.397 -11.262 -7.099 1 18.08 ? H9 FMN 1002 A 1 
HETATM 41 H "H1'1" FMN . . . D 3 -18.84 -10.926 -3.955 1 13.32 ? "H1'1" FMN 1002 A 1 
HETATM 42 H "H1'2" FMN . . . D 3 -19.51 -11.607 -5.432 1 13.32 ? "H1'2" FMN 1002 A 1 
HETATM 43 H H2' FMN . . . D 3 -21.657 -10.387 -4.967 1 15.42 ? H2' FMN 1002 A 1 
HETATM 44 H HO2' FMN . . . D 3 -21.264 -10.038 -2.327 1 12.21 ? HO2' FMN 1002 A 1 
HETATM 45 H H3' FMN . . . D 3 -22.457 -11.839 -3.232 1 20.85 ? H3' FMN 1002 A 1 
HETATM 46 H HO3' FMN . . . D 3 -20.2 -13.052 -2.423 1 23.07 ? HO3' FMN 1002 A 1 
HETATM 47 H H4' FMN . . . D 3 -20.247 -13.449 -4.494 1 24.11 ? H4' FMN 1002 A 1 
HETATM 48 H HO4' FMN . . . D 3 -22.455 -13.391 -6.021 1 27.09 ? HO4' FMN 1002 A 1 
HETATM 49 H "H5'1" FMN . . . D 3 -21.799 -14.611 -2.959 1 24.59 ? "H5'1" FMN 1002 A 1 
HETATM 50 H "H5'2" FMN . . . D 3 -21.947 -15.19 -4.621 1 24.59 ? "H5'2" FMN 1002 A 1 
#
_model_server_stats.io_time_ms              159 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           273 
_model_server_stats.encode_time_ms          23 
_model_server_stats.element_count           50 
#