data_5BOO # _model_server_result.job_id LfmMmgReatH9UcKM_kuR-w _model_server_result.datetime_utc '2024-12-02 23:00:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5boo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1003}' # _entry.id 5BOO # _exptl.entry_id 5BOO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 156.096 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'OROTIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5BOO _cell.length_a 89.257 _cell.length_b 89.257 _cell.length_c 275.61 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5BOO _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E 1 1 B,F,G,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # _chem_comp.formula 'C5 H4 N2 O4' _chem_comp.formula_weight 156.096 _chem_comp.id ORO _chem_comp.mon_nstd_flag . _chem_comp.name 'OROTIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 ORO sing 330 n y N1 C6 ORO sing 331 n y N1 HN1 ORO sing 332 n n C2 O2 ORO doub 333 n n C2 N3 ORO sing 334 n y N3 C4 ORO sing 335 n y N3 HN3 ORO sing 336 n n C4 O4 ORO doub 337 n n C4 C5 ORO sing 338 n y C5 C6 ORO doub 339 n y C5 H5 ORO sing 340 n n C6 C7 ORO sing 341 n n C7 O71 ORO doub 342 n n C7 O72 ORO sing 343 n n O72 HO7 ORO sing 344 n n # _atom_sites.entry_id 5BOO _atom_sites.fract_transf_matrix[1][1] 0.011204 _atom_sites.fract_transf_matrix[1][2] 0.006468 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012937 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003628 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 D65 A 1 1001 1001 D65 D65 . D 3 FMN A 1 1002 1002 FMN FMN . E 4 ORO A 1 1003 1003 ORO ORO . F 2 D65 B 1 1001 1001 D65 D65 . G 3 FMN B 1 1002 1002 FMN FMN . H 4 ORO B 1 1003 1003 ORO ORO . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 ORO . . . H 4 -74.424 16.701 -3.093 1 11.26 ? N1 ORO 1003 B 1 HETATM 2 C C2 ORO . . . H 4 -73.923 17.729 -2.348 1 12.08 ? C2 ORO 1003 B 1 HETATM 3 O O2 ORO . . . H 4 -73.604 18.766 -2.882 1 10.31 ? O2 ORO 1003 B 1 HETATM 4 N N3 ORO . . . H 4 -73.778 17.589 -0.991 1 15.89 ? N3 ORO 1003 B 1 HETATM 5 C C4 ORO . . . H 4 -74.128 16.441 -0.397 1 18.92 ? C4 ORO 1003 B 1 HETATM 6 O O4 ORO . . . H 4 -73.999 16.325 0.791 1 22.78 ? O4 ORO 1003 B 1 HETATM 7 C C5 ORO . . . H 4 -74.637 15.4 -1.147 1 16.03 ? C5 ORO 1003 B 1 HETATM 8 C C6 ORO . . . H 4 -74.781 15.546 -2.496 1 13.76 ? C6 ORO 1003 B 1 HETATM 9 C C7 ORO . . . H 4 -75.343 14.397 -3.326 1 16.09 ? C7 ORO 1003 B 1 HETATM 10 O O71 ORO . . . H 4 -76.288 14.608 -4.116 1 16.36 ? O71 ORO 1003 B 1 HETATM 11 O O72 ORO . . . H 4 -74.856 13.241 -3.22 1 17.67 ? O72 ORO 1003 B 1 HETATM 12 H HN1 ORO . . . H 4 -74.525 16.802 -4.032 1 13.52 ? HN1 ORO 1003 B 1 HETATM 13 H HN3 ORO . . . H 4 -73.429 18.299 -0.477 1 19.07 ? HN3 ORO 1003 B 1 HETATM 14 H H5 ORO . . . H 4 -74.903 14.535 -0.701 1 19.24 ? H5 ORO 1003 B 1 # _model_server_stats.io_time_ms 44 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #