data_5BPG # _model_server_result.job_id NGkwqXyaBC7EcPJhxZjdLw _model_server_result.datetime_utc '2024-11-11 15:01:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5bpg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":203}' # _entry.id 5BPG # _exptl.entry_id 5BPG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.82 _cell.angle_gamma 90 _cell.entry_id 5BPG _cell.length_a 77.3 _cell.length_b 44.44 _cell.length_c 114.95 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5BPG _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,O 1 1 B,F,G,H,P 2 1 C,I,J,K,Q 3 1 D,L,M,N,R 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 H N N ? 3 K N N ? 3 N N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 116 n n C1 C2 GOL sing 117 n n C1 H11 GOL sing 118 n n C1 H12 GOL sing 119 n n O1 HO1 GOL sing 120 n n C2 O2 GOL sing 121 n n C2 C3 GOL sing 122 n n C2 H2 GOL sing 123 n n O2 HO2 GOL sing 124 n n C3 O3 GOL sing 125 n n C3 H31 GOL sing 126 n n C3 H32 GOL sing 127 n n O3 HO3 GOL sing 128 n n # _atom_sites.entry_id 5BPG _atom_sites.fract_transf_matrix[1][1] 0.012937 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000637 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022502 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00871 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 CL A 1 201 3 CL CL . F 2 CL B 1 201 5 CL CL . G 2 CL B 1 202 6 CL CL . H 3 GOL B 1 203 11 GOL GOL . I 2 CL C 1 201 2 CL CL . J 2 CL C 1 202 7 CL CL . K 3 GOL C 1 203 12 GOL GOL . L 2 CL D 1 201 1 CL CL . M 2 CL D 1 202 4 CL CL . N 3 GOL D 1 203 13 GOL GOL . O 4 HOH A 1 301 181 HOH HOH . O 4 HOH A 2 302 184 HOH HOH . O 4 HOH A 3 303 243 HOH HOH . O 4 HOH A 4 304 248 HOH HOH . O 4 HOH A 5 305 76 HOH HOH . O 4 HOH A 6 306 198 HOH HOH . O 4 HOH A 7 307 9 HOH HOH . O 4 HOH A 8 308 10 HOH HOH . O 4 HOH A 9 309 16 HOH HOH . O 4 HOH A 10 310 3 HOH HOH . O 4 HOH A 11 311 17 HOH HOH . O 4 HOH A 12 312 108 HOH HOH . O 4 HOH A 13 313 81 HOH HOH . O 4 HOH A 14 314 124 HOH HOH . O 4 HOH A 15 315 58 HOH HOH . O 4 HOH A 16 316 93 HOH HOH . O 4 HOH A 17 317 82 HOH HOH . O 4 HOH A 18 318 221 HOH HOH . O 4 HOH A 19 319 4 HOH HOH . O 4 HOH A 20 320 249 HOH HOH . O 4 HOH A 21 321 252 HOH HOH . O 4 HOH A 22 322 133 HOH HOH . O 4 HOH A 23 323 28 HOH HOH . O 4 HOH A 24 324 57 HOH HOH . O 4 HOH A 25 325 233 HOH HOH . O 4 HOH A 26 326 122 HOH HOH . O 4 HOH A 27 327 41 HOH HOH . O 4 HOH A 28 328 231 HOH HOH . O 4 HOH A 29 329 74 HOH HOH . O 4 HOH A 30 330 87 HOH HOH . O 4 HOH A 31 331 213 HOH HOH . O 4 HOH A 32 332 44 HOH HOH . O 4 HOH A 33 333 73 HOH HOH . O 4 HOH A 34 334 250 HOH HOH . O 4 HOH A 35 335 166 HOH HOH . O 4 HOH A 36 336 2 HOH HOH . O 4 HOH A 37 337 47 HOH HOH . O 4 HOH A 38 338 110 HOH HOH . O 4 HOH A 39 339 68 HOH HOH . O 4 HOH A 40 340 132 HOH HOH . O 4 HOH A 41 341 245 HOH HOH . O 4 HOH A 42 342 66 HOH HOH . O 4 HOH A 43 343 5 HOH HOH . O 4 HOH A 44 344 183 HOH HOH . O 4 HOH A 45 345 163 HOH HOH . O 4 HOH A 46 346 34 HOH HOH . O 4 HOH A 47 347 37 HOH HOH . O 4 HOH A 48 348 209 HOH HOH . O 4 HOH A 49 349 23 HOH HOH . O 4 HOH A 50 350 187 HOH HOH . O 4 HOH A 51 351 84 HOH HOH . O 4 HOH A 52 352 241 HOH HOH . O 4 HOH A 53 353 75 HOH HOH . O 4 HOH A 54 354 247 HOH HOH . O 4 HOH A 55 355 186 HOH HOH . O 4 HOH A 56 356 253 HOH HOH . O 4 HOH A 57 357 106 HOH HOH . O 4 HOH A 58 358 251 HOH HOH . O 4 HOH A 59 359 240 HOH HOH . O 4 HOH A 60 360 42 HOH HOH . O 4 HOH A 61 361 161 HOH HOH . O 4 HOH A 62 362 165 HOH HOH . O 4 HOH A 63 363 31 HOH HOH . O 4 HOH A 64 364 149 HOH HOH . O 4 HOH A 65 365 146 HOH HOH . O 4 HOH A 66 366 92 HOH HOH . O 4 HOH A 67 367 46 HOH HOH . O 4 HOH A 68 368 123 HOH HOH . O 4 HOH A 69 369 119 HOH HOH . O 4 HOH A 70 370 226 HOH HOH . O 4 HOH A 71 371 246 HOH HOH . O 4 HOH A 72 372 242 HOH HOH . P 4 HOH B 1 301 53 HOH HOH . P 4 HOH B 2 302 25 HOH HOH . P 4 HOH B 3 303 52 HOH HOH . P 4 HOH B 4 304 152 HOH HOH . P 4 HOH B 5 305 148 HOH HOH . P 4 HOH B 6 306 12 HOH HOH . P 4 HOH B 7 307 155 HOH HOH . P 4 HOH B 8 308 273 HOH HOH . P 4 HOH B 9 309 176 HOH HOH . P 4 HOH B 10 310 260 HOH HOH . P 4 HOH B 11 311 18 HOH HOH . P 4 HOH B 12 312 178 HOH HOH . P 4 HOH B 13 313 127 HOH HOH . P 4 HOH B 14 314 135 HOH HOH . P 4 HOH B 15 315 129 HOH HOH . P 4 HOH B 16 316 48 HOH HOH . P 4 HOH B 17 317 20 HOH HOH . P 4 HOH B 18 318 193 HOH HOH . P 4 HOH B 19 319 136 HOH HOH . P 4 HOH B 20 320 113 HOH HOH . P 4 HOH B 21 321 35 HOH HOH . P 4 HOH B 22 322 196 HOH HOH . P 4 HOH B 23 323 49 HOH HOH . P 4 HOH B 24 324 69 HOH HOH . P 4 HOH B 25 325 64 HOH HOH . P 4 HOH B 26 326 147 HOH HOH . P 4 HOH B 27 327 1 HOH HOH . P 4 HOH B 28 328 50 HOH HOH . P 4 HOH B 29 329 257 HOH HOH . P 4 HOH B 30 330 235 HOH HOH . P 4 HOH B 31 331 70 HOH HOH . P 4 HOH B 32 332 51 HOH HOH . P 4 HOH B 33 333 229 HOH HOH . P 4 HOH B 34 334 225 HOH HOH . P 4 HOH B 35 335 102 HOH HOH . P 4 HOH B 36 336 103 HOH HOH . P 4 HOH B 37 337 26 HOH HOH . P 4 HOH B 38 338 59 HOH HOH . P 4 HOH B 39 339 60 HOH HOH . P 4 HOH B 40 340 154 HOH HOH . P 4 HOH B 41 341 88 HOH HOH . P 4 HOH B 42 342 259 HOH HOH . P 4 HOH B 43 343 11 HOH HOH . P 4 HOH B 44 344 13 HOH HOH . P 4 HOH B 45 345 105 HOH HOH . P 4 HOH B 46 346 27 HOH HOH . P 4 HOH B 47 347 234 HOH HOH . P 4 HOH B 48 348 227 HOH HOH . P 4 HOH B 49 349 167 HOH HOH . P 4 HOH B 50 350 72 HOH HOH . P 4 HOH B 51 351 38 HOH HOH . P 4 HOH B 52 352 237 HOH HOH . P 4 HOH B 53 353 96 HOH HOH . P 4 HOH B 54 354 99 HOH HOH . P 4 HOH B 55 355 261 HOH HOH . P 4 HOH B 56 356 121 HOH HOH . P 4 HOH B 57 357 172 HOH HOH . P 4 HOH B 58 358 85 HOH HOH . P 4 HOH B 59 359 125 HOH HOH . P 4 HOH B 60 360 14 HOH HOH . P 4 HOH B 61 361 137 HOH HOH . P 4 HOH B 62 362 190 HOH HOH . P 4 HOH B 63 363 254 HOH HOH . P 4 HOH B 64 364 188 HOH HOH . P 4 HOH B 65 365 61 HOH HOH . P 4 HOH B 66 366 169 HOH HOH . P 4 HOH B 67 367 97 HOH HOH . P 4 HOH B 68 368 256 HOH HOH . P 4 HOH B 69 369 258 HOH HOH . P 4 HOH B 70 370 255 HOH HOH . P 4 HOH B 71 371 90 HOH HOH . P 4 HOH B 72 372 6 HOH HOH . P 4 HOH B 73 373 150 HOH HOH . P 4 HOH B 74 374 175 HOH HOH . P 4 HOH B 75 375 212 HOH HOH . P 4 HOH B 76 376 302 HOH HOH . P 4 HOH B 77 377 170 HOH HOH . P 4 HOH B 78 378 244 HOH HOH . P 4 HOH B 79 379 134 HOH HOH . P 4 HOH B 80 380 164 HOH HOH . P 4 HOH B 81 381 156 HOH HOH . P 4 HOH B 82 382 202 HOH HOH . P 4 HOH B 83 383 208 HOH HOH . P 4 HOH B 84 384 174 HOH HOH . P 4 HOH B 85 385 189 HOH HOH . P 4 HOH B 86 386 215 HOH HOH . Q 4 HOH C 1 301 32 HOH HOH . Q 4 HOH C 2 302 276 HOH HOH . Q 4 HOH C 3 303 278 HOH HOH . Q 4 HOH C 4 304 284 HOH HOH . Q 4 HOH C 5 305 114 HOH HOH . Q 4 HOH C 6 306 153 HOH HOH . Q 4 HOH C 7 307 262 HOH HOH . Q 4 HOH C 8 308 160 HOH HOH . Q 4 HOH C 9 309 281 HOH HOH . Q 4 HOH C 10 310 126 HOH HOH . Q 4 HOH C 11 311 91 HOH HOH . Q 4 HOH C 12 312 78 HOH HOH . Q 4 HOH C 13 313 7 HOH HOH . Q 4 HOH C 14 314 162 HOH HOH . Q 4 HOH C 15 315 195 HOH HOH . Q 4 HOH C 16 316 77 HOH HOH . Q 4 HOH C 17 317 62 HOH HOH . Q 4 HOH C 18 318 138 HOH HOH . Q 4 HOH C 19 319 107 HOH HOH . Q 4 HOH C 20 320 282 HOH HOH . Q 4 HOH C 21 321 158 HOH HOH . Q 4 HOH C 22 322 43 HOH HOH . Q 4 HOH C 23 323 274 HOH HOH . Q 4 HOH C 24 324 8 HOH HOH . Q 4 HOH C 25 325 177 HOH HOH . Q 4 HOH C 26 326 79 HOH HOH . Q 4 HOH C 27 327 39 HOH HOH . Q 4 HOH C 28 328 204 HOH HOH . Q 4 HOH C 29 329 211 HOH HOH . Q 4 HOH C 30 330 238 HOH HOH . Q 4 HOH C 31 331 272 HOH HOH . Q 4 HOH C 32 332 45 HOH HOH . Q 4 HOH C 33 333 40 HOH HOH . Q 4 HOH C 34 334 168 HOH HOH . Q 4 HOH C 35 335 131 HOH HOH . Q 4 HOH C 36 336 95 HOH HOH . Q 4 HOH C 37 337 100 HOH HOH . Q 4 HOH C 38 338 239 HOH HOH . Q 4 HOH C 39 339 145 HOH HOH . Q 4 HOH C 40 340 285 HOH HOH . Q 4 HOH C 41 341 115 HOH HOH . Q 4 HOH C 42 342 222 HOH HOH . Q 4 HOH C 43 343 200 HOH HOH . Q 4 HOH C 44 344 287 HOH HOH . Q 4 HOH C 45 345 277 HOH HOH . Q 4 HOH C 46 346 289 HOH HOH . Q 4 HOH C 47 347 197 HOH HOH . Q 4 HOH C 48 348 264 HOH HOH . Q 4 HOH C 49 349 151 HOH HOH . Q 4 HOH C 50 350 83 HOH HOH . Q 4 HOH C 51 351 283 HOH HOH . Q 4 HOH C 52 352 266 HOH HOH . Q 4 HOH C 53 353 159 HOH HOH . Q 4 HOH C 54 354 224 HOH HOH . Q 4 HOH C 55 355 269 HOH HOH . Q 4 HOH C 56 356 67 HOH HOH . Q 4 HOH C 57 357 55 HOH HOH . Q 4 HOH C 58 358 65 HOH HOH . Q 4 HOH C 59 359 112 HOH HOH . Q 4 HOH C 60 360 265 HOH HOH . Q 4 HOH C 61 361 54 HOH HOH . Q 4 HOH C 62 362 275 HOH HOH . Q 4 HOH C 63 363 117 HOH HOH . Q 4 HOH C 64 364 223 HOH HOH . Q 4 HOH C 65 365 267 HOH HOH . Q 4 HOH C 66 366 30 HOH HOH . Q 4 HOH C 67 367 157 HOH HOH . Q 4 HOH C 68 368 268 HOH HOH . Q 4 HOH C 69 369 205 HOH HOH . Q 4 HOH C 70 370 201 HOH HOH . Q 4 HOH C 71 371 19 HOH HOH . Q 4 HOH C 72 372 191 HOH HOH . Q 4 HOH C 73 373 22 HOH HOH . Q 4 HOH C 74 374 109 HOH HOH . Q 4 HOH C 75 375 71 HOH HOH . Q 4 HOH C 76 376 118 HOH HOH . Q 4 HOH C 77 377 288 HOH HOH . Q 4 HOH C 78 378 206 HOH HOH . Q 4 HOH C 79 379 142 HOH HOH . Q 4 HOH C 80 380 279 HOH HOH . Q 4 HOH C 81 381 280 HOH HOH . R 4 HOH D 1 301 139 HOH HOH . R 4 HOH D 2 302 33 HOH HOH . R 4 HOH D 3 303 143 HOH HOH . R 4 HOH D 4 304 36 HOH HOH . R 4 HOH D 5 305 203 HOH HOH . R 4 HOH D 6 306 141 HOH HOH . R 4 HOH D 7 307 130 HOH HOH . R 4 HOH D 8 308 290 HOH HOH . R 4 HOH D 9 309 24 HOH HOH . R 4 HOH D 10 310 207 HOH HOH . R 4 HOH D 11 311 29 HOH HOH . R 4 HOH D 12 312 171 HOH HOH . R 4 HOH D 13 313 21 HOH HOH . R 4 HOH D 14 314 182 HOH HOH . R 4 HOH D 15 315 199 HOH HOH . R 4 HOH D 16 316 180 HOH HOH . R 4 HOH D 17 317 298 HOH HOH . R 4 HOH D 18 318 80 HOH HOH . R 4 HOH D 19 319 270 HOH HOH . R 4 HOH D 20 320 217 HOH HOH . R 4 HOH D 21 321 192 HOH HOH . R 4 HOH D 22 322 128 HOH HOH . R 4 HOH D 23 323 297 HOH HOH . R 4 HOH D 24 324 179 HOH HOH . R 4 HOH D 25 325 301 HOH HOH . R 4 HOH D 26 326 104 HOH HOH . R 4 HOH D 27 327 210 HOH HOH . R 4 HOH D 28 328 94 HOH HOH . R 4 HOH D 29 329 291 HOH HOH . R 4 HOH D 30 330 299 HOH HOH . R 4 HOH D 31 331 63 HOH HOH . R 4 HOH D 32 332 101 HOH HOH . R 4 HOH D 33 333 294 HOH HOH . R 4 HOH D 34 334 236 HOH HOH . R 4 HOH D 35 335 220 HOH HOH . R 4 HOH D 36 336 140 HOH HOH . R 4 HOH D 37 337 271 HOH HOH . R 4 HOH D 38 338 89 HOH HOH . R 4 HOH D 39 339 300 HOH HOH . R 4 HOH D 40 340 194 HOH HOH . R 4 HOH D 41 341 86 HOH HOH . R 4 HOH D 42 342 98 HOH HOH . R 4 HOH D 43 343 232 HOH HOH . R 4 HOH D 44 344 293 HOH HOH . R 4 HOH D 45 345 228 HOH HOH . R 4 HOH D 46 346 214 HOH HOH . R 4 HOH D 47 347 292 HOH HOH . R 4 HOH D 48 348 263 HOH HOH . R 4 HOH D 49 349 230 HOH HOH . R 4 HOH D 50 350 120 HOH HOH . R 4 HOH D 51 351 56 HOH HOH . R 4 HOH D 52 352 219 HOH HOH . R 4 HOH D 53 353 116 HOH HOH . R 4 HOH D 54 354 173 HOH HOH . R 4 HOH D 55 355 15 HOH HOH . R 4 HOH D 56 356 216 HOH HOH . R 4 HOH D 57 357 185 HOH HOH . R 4 HOH D 58 358 295 HOH HOH . R 4 HOH D 59 359 111 HOH HOH . R 4 HOH D 60 360 144 HOH HOH . R 4 HOH D 61 361 296 HOH HOH . R 4 HOH D 62 362 218 HOH HOH . R 4 HOH D 63 363 286 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . N 3 19.527 -26.641 -64.261 1 32.69 ? C1 GOL 203 D 1 HETATM 2 O O1 GOL . . . N 3 19.728 -26.364 -65.655 1 34.49 ? O1 GOL 203 D 1 HETATM 3 C C2 GOL . . . N 3 20.723 -27.296 -63.579 1 33.07 ? C2 GOL 203 D 1 HETATM 4 O O2 GOL . . . N 3 21.959 -26.761 -64.086 1 38.77 ? O2 GOL 203 D 1 HETATM 5 C C3 GOL . . . N 3 20.691 -27.1 -62.066 1 32.77 ? C3 GOL 203 D 1 HETATM 6 O O3 GOL . . . N 3 19.464 -26.504 -61.628 1 33 ? O3 GOL 203 D 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 6 #