data_5BPP # _model_server_result.job_id K4T151pziH3oLlcJ0crMQg _model_server_result.datetime_utc '2024-10-28 02:21:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5bpp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":703}' # _entry.id 5BPP # _exptl.entry_id 5BPP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 173.04 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'YTTERBIUM (III) ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5BPP _cell.length_a 77.983 _cell.length_b 87.186 _cell.length_c 99.434 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5BPP _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 196 A ASP 175 1_555 C YB YB . A YB 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.648 ? metalc ? metalc2 A OE2 GLU 203 A GLU 182 1_555 E YB YB . A YB 704 3_644 ? ? ? ? ? ? ? ? ? ? ? ? 3.099 ? metalc ? metalc3 A NE2 HIS 316 A HIS 295 1_555 B ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? metalc ? metalc4 A NE2 HIS 320 A HIS 299 1_555 B ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? metalc ? metalc5 A OE1 GLU 339 A GLU 318 1_555 B ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.947 ? metalc ? metalc6 A OE2 GLU 339 A GLU 318 1_555 B ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.633 ? metalc ? metalc7 A OE2 GLU 611 A GLU 590 1_555 E YB YB . A YB 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.021 ? metalc ? metalc8 B ZN ZN . A ZN 701 1_555 G N10 A4Z . A A4Z 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? metalc ? metalc9 B ZN ZN . A ZN 701 1_555 G O9 A4Z . A A4Z 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.592 ? # _chem_comp.formula 'Yb 3' _chem_comp.formula_weight 173.04 _chem_comp.id YB _chem_comp.mon_nstd_flag . _chem_comp.name 'YTTERBIUM (III) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5BPP _atom_sites.fract_transf_matrix[1][1] 0.012823 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01147 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010057 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 701 1 ZN ZN . C 3 YB A 1 702 6 YB YB . D 3 YB A 1 703 7 YB YB . E 3 YB A 1 704 8 YB YB . F 4 ACT A 1 705 2 ACT ACT . G 5 A4Z A 1 706 1 A4Z 4AZ . H 6 HOH A 1 801 386 HOH HOH . H 6 HOH A 2 802 215 HOH HOH . H 6 HOH A 3 803 384 HOH HOH . H 6 HOH A 4 804 246 HOH HOH . H 6 HOH A 5 805 121 HOH HOH . H 6 HOH A 6 806 179 HOH HOH . H 6 HOH A 7 807 387 HOH HOH . H 6 HOH A 8 808 157 HOH HOH . H 6 HOH A 9 809 154 HOH HOH . H 6 HOH A 10 810 177 HOH HOH . H 6 HOH A 11 811 152 HOH HOH . H 6 HOH A 12 812 103 HOH HOH . H 6 HOH A 13 813 200 HOH HOH . H 6 HOH A 14 814 163 HOH HOH . H 6 HOH A 15 815 45 HOH HOH . H 6 HOH A 16 816 273 HOH HOH . H 6 HOH A 17 817 122 HOH HOH . H 6 HOH A 18 818 197 HOH HOH . H 6 HOH A 19 819 41 HOH HOH . H 6 HOH A 20 820 16 HOH HOH . H 6 HOH A 21 821 113 HOH HOH . H 6 HOH A 22 822 53 HOH HOH . H 6 HOH A 23 823 39 HOH HOH . H 6 HOH A 24 824 128 HOH HOH . H 6 HOH A 25 825 245 HOH HOH . H 6 HOH A 26 826 218 HOH HOH . H 6 HOH A 27 827 198 HOH HOH . H 6 HOH A 28 828 169 HOH HOH . H 6 HOH A 29 829 210 HOH HOH . H 6 HOH A 30 830 171 HOH HOH . H 6 HOH A 31 831 221 HOH HOH . H 6 HOH A 32 832 28 HOH HOH . H 6 HOH A 33 833 8 HOH HOH . H 6 HOH A 34 834 191 HOH HOH . H 6 HOH A 35 836 255 HOH HOH . H 6 HOH A 36 837 388 HOH HOH . H 6 HOH A 37 838 145 HOH HOH . H 6 HOH A 38 839 112 HOH HOH . H 6 HOH A 39 840 135 HOH HOH . H 6 HOH A 40 841 203 HOH HOH . H 6 HOH A 41 842 173 HOH HOH . H 6 HOH A 42 843 170 HOH HOH . H 6 HOH A 43 844 226 HOH HOH . H 6 HOH A 44 845 59 HOH HOH . H 6 HOH A 45 846 78 HOH HOH . H 6 HOH A 46 847 155 HOH HOH . H 6 HOH A 47 848 151 HOH HOH . H 6 HOH A 48 849 116 HOH HOH . H 6 HOH A 49 850 109 HOH HOH . H 6 HOH A 50 851 142 HOH HOH . H 6 HOH A 51 852 37 HOH HOH . H 6 HOH A 52 853 123 HOH HOH . H 6 HOH A 53 854 118 HOH HOH . H 6 HOH A 54 855 114 HOH HOH . H 6 HOH A 55 856 172 HOH HOH . H 6 HOH A 56 857 181 HOH HOH . H 6 HOH A 57 858 130 HOH HOH . H 6 HOH A 58 859 44 HOH HOH . H 6 HOH A 59 860 175 HOH HOH . H 6 HOH A 60 861 138 HOH HOH . H 6 HOH A 61 862 19 HOH HOH . H 6 HOH A 62 863 223 HOH HOH . H 6 HOH A 63 864 134 HOH HOH . H 6 HOH A 64 865 24 HOH HOH . H 6 HOH A 65 866 26 HOH HOH . H 6 HOH A 66 867 29 HOH HOH . H 6 HOH A 67 868 139 HOH HOH . H 6 HOH A 68 869 212 HOH HOH . H 6 HOH A 69 870 286 HOH HOH . H 6 HOH A 70 871 65 HOH HOH . H 6 HOH A 71 872 75 HOH HOH . H 6 HOH A 72 873 51 HOH HOH . H 6 HOH A 73 874 193 HOH HOH . H 6 HOH A 74 875 108 HOH HOH . H 6 HOH A 75 876 265 HOH HOH . H 6 HOH A 76 877 23 HOH HOH . H 6 HOH A 77 878 32 HOH HOH . H 6 HOH A 78 879 83 HOH HOH . H 6 HOH A 79 880 168 HOH HOH . H 6 HOH A 80 881 31 HOH HOH . H 6 HOH A 81 882 22 HOH HOH . H 6 HOH A 82 883 238 HOH HOH . H 6 HOH A 83 884 36 HOH HOH . H 6 HOH A 84 885 95 HOH HOH . H 6 HOH A 85 886 25 HOH HOH . H 6 HOH A 86 887 43 HOH HOH . H 6 HOH A 87 888 377 HOH HOH . H 6 HOH A 88 889 254 HOH HOH . H 6 HOH A 89 890 40 HOH HOH . H 6 HOH A 90 891 9 HOH HOH . H 6 HOH A 91 892 49 HOH HOH . H 6 HOH A 92 893 120 HOH HOH . H 6 HOH A 93 894 111 HOH HOH . H 6 HOH A 94 895 143 HOH HOH . H 6 HOH A 95 896 165 HOH HOH . H 6 HOH A 96 897 15 HOH HOH . H 6 HOH A 97 898 196 HOH HOH . H 6 HOH A 98 899 56 HOH HOH . H 6 HOH A 99 900 186 HOH HOH . H 6 HOH A 100 901 69 HOH HOH . H 6 HOH A 101 902 38 HOH HOH . H 6 HOH A 102 903 33 HOH HOH . H 6 HOH A 103 904 58 HOH HOH . H 6 HOH A 104 905 161 HOH HOH . H 6 HOH A 105 906 18 HOH HOH . H 6 HOH A 106 907 224 HOH HOH . H 6 HOH A 107 908 5 HOH HOH . H 6 HOH A 108 909 71 HOH HOH . H 6 HOH A 109 910 117 HOH HOH . H 6 HOH A 110 911 207 HOH HOH . H 6 HOH A 111 912 136 HOH HOH . H 6 HOH A 112 913 253 HOH HOH . H 6 HOH A 113 914 104 HOH HOH . H 6 HOH A 114 915 127 HOH HOH . H 6 HOH A 115 916 88 HOH HOH . H 6 HOH A 116 917 192 HOH HOH . H 6 HOH A 117 918 79 HOH HOH . H 6 HOH A 118 919 149 HOH HOH . H 6 HOH A 119 920 260 HOH HOH . H 6 HOH A 120 921 262 HOH HOH . H 6 HOH A 121 922 46 HOH HOH . H 6 HOH A 122 923 105 HOH HOH . H 6 HOH A 123 924 47 HOH HOH . H 6 HOH A 124 925 156 HOH HOH . H 6 HOH A 125 926 115 HOH HOH . H 6 HOH A 126 927 199 HOH HOH . H 6 HOH A 127 928 10 HOH HOH . H 6 HOH A 128 929 60 HOH HOH . H 6 HOH A 129 930 94 HOH HOH . H 6 HOH A 130 931 211 HOH HOH . H 6 HOH A 131 932 96 HOH HOH . H 6 HOH A 132 933 119 HOH HOH . H 6 HOH A 133 934 288 HOH HOH . H 6 HOH A 134 935 141 HOH HOH . H 6 HOH A 135 936 206 HOH HOH . H 6 HOH A 136 937 132 HOH HOH . H 6 HOH A 137 938 52 HOH HOH . H 6 HOH A 138 939 240 HOH HOH . H 6 HOH A 139 940 376 HOH HOH . H 6 HOH A 140 941 147 HOH HOH . H 6 HOH A 141 942 30 HOH HOH . H 6 HOH A 142 943 72 HOH HOH . H 6 HOH A 143 944 42 HOH HOH . H 6 HOH A 144 945 150 HOH HOH . H 6 HOH A 145 946 81 HOH HOH . H 6 HOH A 146 947 67 HOH HOH . H 6 HOH A 147 948 93 HOH HOH . H 6 HOH A 148 949 73 HOH HOH . H 6 HOH A 149 950 160 HOH HOH . H 6 HOH A 150 951 99 HOH HOH . H 6 HOH A 151 952 98 HOH HOH . H 6 HOH A 152 953 91 HOH HOH . H 6 HOH A 153 954 35 HOH HOH . H 6 HOH A 154 955 374 HOH HOH . H 6 HOH A 155 956 80 HOH HOH . H 6 HOH A 156 957 50 HOH HOH . H 6 HOH A 157 958 167 HOH HOH . H 6 HOH A 158 959 57 HOH HOH . H 6 HOH A 159 960 14 HOH HOH . H 6 HOH A 160 961 124 HOH HOH . H 6 HOH A 161 962 237 HOH HOH . H 6 HOH A 162 963 21 HOH HOH . H 6 HOH A 163 964 74 HOH HOH . H 6 HOH A 164 965 64 HOH HOH . H 6 HOH A 165 966 131 HOH HOH . H 6 HOH A 166 967 84 HOH HOH . H 6 HOH A 167 968 77 HOH HOH . H 6 HOH A 168 969 162 HOH HOH . H 6 HOH A 169 970 153 HOH HOH . H 6 HOH A 170 971 17 HOH HOH . H 6 HOH A 171 972 34 HOH HOH . H 6 HOH A 172 973 62 HOH HOH . H 6 HOH A 173 974 27 HOH HOH . H 6 HOH A 174 975 97 HOH HOH . H 6 HOH A 175 976 1 HOH HOH . H 6 HOH A 176 977 6 HOH HOH . H 6 HOH A 177 978 159 HOH HOH . H 6 HOH A 178 979 140 HOH HOH . H 6 HOH A 179 980 85 HOH HOH . H 6 HOH A 180 981 256 HOH HOH . H 6 HOH A 181 982 148 HOH HOH . H 6 HOH A 182 983 126 HOH HOH . H 6 HOH A 183 984 180 HOH HOH . H 6 HOH A 184 985 144 HOH HOH . H 6 HOH A 185 986 146 HOH HOH . H 6 HOH A 186 987 70 HOH HOH . H 6 HOH A 187 988 189 HOH HOH . H 6 HOH A 188 989 48 HOH HOH . H 6 HOH A 189 990 66 HOH HOH . H 6 HOH A 190 991 188 HOH HOH . H 6 HOH A 191 992 63 HOH HOH . H 6 HOH A 192 993 100 HOH HOH . H 6 HOH A 193 994 55 HOH HOH . H 6 HOH A 194 995 220 HOH HOH . H 6 HOH A 195 996 164 HOH HOH . H 6 HOH A 196 997 7 HOH HOH . H 6 HOH A 197 998 82 HOH HOH . H 6 HOH A 198 999 107 HOH HOH . H 6 HOH A 199 1000 2 HOH HOH . H 6 HOH A 200 1001 12 HOH HOH . H 6 HOH A 201 1002 54 HOH HOH . H 6 HOH A 202 1003 234 HOH HOH . H 6 HOH A 203 1004 86 HOH HOH . H 6 HOH A 204 1005 61 HOH HOH . H 6 HOH A 205 1006 20 HOH HOH . H 6 HOH A 206 1007 90 HOH HOH . H 6 HOH A 207 1008 3 HOH HOH . H 6 HOH A 208 1009 89 HOH HOH . H 6 HOH A 209 1010 13 HOH HOH . H 6 HOH A 210 1011 68 HOH HOH . H 6 HOH A 211 1012 133 HOH HOH . H 6 HOH A 212 1013 158 HOH HOH . H 6 HOH A 213 1014 201 HOH HOH . H 6 HOH A 214 1015 239 HOH HOH . H 6 HOH A 215 1016 92 HOH HOH . H 6 HOH A 216 1017 11 HOH HOH . H 6 HOH A 217 1018 101 HOH HOH . H 6 HOH A 218 1019 227 HOH HOH . H 6 HOH A 219 1020 243 HOH HOH . H 6 HOH A 220 1021 283 HOH HOH . H 6 HOH A 221 1022 285 HOH HOH . H 6 HOH A 222 1023 378 HOH HOH . H 6 HOH A 223 1024 4 HOH HOH . H 6 HOH A 224 1025 368 HOH HOH . H 6 HOH A 225 1026 231 HOH HOH . H 6 HOH A 226 1027 379 HOH HOH . H 6 HOH A 227 1028 102 HOH HOH . H 6 HOH A 228 1029 373 HOH HOH . H 6 HOH A 229 1030 76 HOH HOH . H 6 HOH A 230 1031 176 HOH HOH . H 6 HOH A 231 1032 166 HOH HOH . H 6 HOH A 232 1033 129 HOH HOH . H 6 HOH A 233 1034 125 HOH HOH . H 6 HOH A 234 1035 366 HOH HOH . H 6 HOH A 235 1036 182 HOH HOH . H 6 HOH A 236 1037 183 HOH HOH . H 6 HOH A 237 1038 270 HOH HOH . H 6 HOH A 238 1039 360 HOH HOH . H 6 HOH A 239 1040 362 HOH HOH . H 6 HOH A 240 1041 363 HOH HOH . H 6 HOH A 241 1042 87 HOH HOH . H 6 HOH A 242 1043 361 HOH HOH . H 6 HOH A 243 1044 365 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol YB _atom_site.label_atom_id YB _atom_site.label_comp_id YB _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 46.048 _atom_site.Cartn_y 67.904 _atom_site.Cartn_z -20.379 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 182.64 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id YB _atom_site.auth_comp_id YB _atom_site.auth_seq_id 703 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #