data_5BQ8 # _model_server_result.job_id GhWIR3uTFYmBupMWXyzm7w _model_server_result.datetime_utc '2024-12-12 01:52:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5bq8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":201}' # _entry.id 5BQ8 # _exptl.entry_id 5BQ8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 106.12 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DI(HYDROXYETHYL)ETHER _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5BQ8 _cell.length_a 102.667 _cell.length_b 53.059 _cell.length_c 96.128 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5BQ8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,I,J 1 1 C,D,F,G,H,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 18 A CYS 39 1_555 A SG CYS 75 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 A SG CYS 34 A CYS 55 1_555 A SG CYS 89 A CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf3 A SG CYS 44 A CYS 65 1_555 A SG CYS 105 A CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 A SG CYS 48 A CYS 69 1_555 A SG CYS 107 A CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf5 A SG CYS 72 A CYS 93 1_555 B SG CYS 74 B CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf6 A SG CYS 74 A CYS 95 1_555 B SG CYS 72 B CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf7 A SG CYS 110 A CYS 131 1_555 B SG CYS 110 B CYS 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf8 B SG CYS 18 B CYS 39 1_555 B SG CYS 75 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf9 B SG CYS 34 B CYS 55 1_555 B SG CYS 89 B CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf10 B SG CYS 44 B CYS 65 1_555 B SG CYS 105 B CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf11 B SG CYS 48 B CYS 69 1_555 B SG CYS 107 B CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf12 C SG CYS 18 C CYS 39 1_555 C SG CYS 75 C CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf13 C SG CYS 34 C CYS 55 1_555 C SG CYS 89 C CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf14 C SG CYS 44 C CYS 65 1_555 C SG CYS 105 C CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf15 C SG CYS 48 C CYS 69 1_555 C SG CYS 107 C CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf16 C SG CYS 72 C CYS 93 1_555 D SG CYS 74 D CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf17 C SG CYS 74 C CYS 95 1_555 D SG CYS 72 D CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf18 C SG CYS 110 C CYS 131 1_555 D SG CYS 110 D CYS 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf19 D SG CYS 18 D CYS 39 1_555 D SG CYS 75 D CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf20 D SG CYS 34 D CYS 55 1_555 D SG CYS 89 D CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf21 D SG CYS 44 D CYS 65 1_555 D SG CYS 105 D CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf22 D SG CYS 48 D CYS 69 1_555 D SG CYS 107 D CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? covale ? covale1 A C LEU 64 A LEU 85 1_555 A N MLY 65 A MLY 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A C MLY 65 A MLY 86 1_555 A N GLN 66 A GLN 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale3 A C LEU 82 A LEU 103 1_555 A N MLY 83 A MLY 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 A C MLY 83 A MLY 104 1_555 A N ALA 84 A ALA 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale5 B C TYR 32 B TYR 53 1_555 B N MLY 33 B MLY 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale6 B C MLY 33 B MLY 54 1_555 B N CYS 34 B CYS 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale7 B C LEU 64 B LEU 85 1_555 B N MLY 65 B MLY 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale8 B C MLY 65 B MLY 86 1_555 B N GLN 66 B GLN 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale9 B C LEU 82 B LEU 103 1_555 B N MLY 83 B MLY 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale10 B C MLY 83 B MLY 104 1_555 B N ALA 84 B ALA 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale11 C C LEU 64 C LEU 85 1_555 C N MLY 65 C MLY 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale12 C C MLY 65 C MLY 86 1_555 C N GLN 66 C GLN 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale13 C C LEU 82 C LEU 103 1_555 C N MLY 83 C MLY 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale14 C C MLY 83 C MLY 104 1_555 C N ALA 84 C ALA 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale15 D C SER 36 D SER 57 1_555 D N MLY 37 D MLY 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale16 D C MLY 37 D MLY 58 1_555 D N MET 38 D MET 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale17 D C LEU 64 D LEU 85 1_555 D N MLY 65 D MLY 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale18 D C MLY 65 D MLY 86 1_555 D N GLN 66 D GLN 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale19 D C SER 80 D SER 101 1_555 D N MLY 81 D MLY 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale20 D C MLY 81 D MLY 102 1_555 D N LEU 82 D LEU 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale21 D C LEU 82 D LEU 103 1_555 D N MLY 83 D MLY 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale22 D C MLY 83 D MLY 104 1_555 D N ALA 84 D ALA 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? # _chem_comp.formula 'C4 H10 O3' _chem_comp.formula_weight 106.12 _chem_comp.id PEG _chem_comp.mon_nstd_flag . _chem_comp.name DI(HYDROXYETHYL)ETHER _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PEG sing 266 n n C1 C2 PEG sing 267 n n C1 H11 PEG sing 268 n n C1 H12 PEG sing 269 n n O1 HO1 PEG sing 270 n n C2 O2 PEG sing 271 n n C2 H21 PEG sing 272 n n C2 H22 PEG sing 273 n n O2 C3 PEG sing 274 n n C3 C4 PEG sing 275 n n C3 H31 PEG sing 276 n n C3 H32 PEG sing 277 n n C4 O4 PEG sing 278 n n C4 H41 PEG sing 279 n n C4 H42 PEG sing 280 n n O4 HO4 PEG sing 281 n n # _atom_sites.entry_id 5BQ8 _atom_sites.fract_transf_matrix[1][1] 0.00974 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018847 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010403 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 CL B 1 201 2 CL CL . F 4 CL C 1 201 5 CL CL . G 5 PEG D 1 201 1 PEG PEG . H 4 CL D 1 202 6 CL CL . I 6 HOH A 1 201 119 HOH HOH . I 6 HOH A 2 202 16 HOH HOH . I 6 HOH A 3 203 70 HOH HOH . I 6 HOH A 4 204 7 HOH HOH . I 6 HOH A 5 205 98 HOH HOH . I 6 HOH A 6 206 4 HOH HOH . I 6 HOH A 7 207 19 HOH HOH . I 6 HOH A 8 208 50 HOH HOH . I 6 HOH A 9 209 51 HOH HOH . I 6 HOH A 10 210 27 HOH HOH . I 6 HOH A 11 211 90 HOH HOH . I 6 HOH A 12 212 77 HOH HOH . I 6 HOH A 13 213 13 HOH HOH . I 6 HOH A 14 214 78 HOH HOH . I 6 HOH A 15 215 80 HOH HOH . I 6 HOH A 16 216 33 HOH HOH . I 6 HOH A 17 217 40 HOH HOH . I 6 HOH A 18 218 34 HOH HOH . I 6 HOH A 19 219 49 HOH HOH . I 6 HOH A 20 220 56 HOH HOH . I 6 HOH A 21 221 121 HOH HOH . I 6 HOH A 22 222 112 HOH HOH . I 6 HOH A 23 223 74 HOH HOH . I 6 HOH A 24 224 60 HOH HOH . I 6 HOH A 25 225 108 HOH HOH . I 6 HOH A 26 226 42 HOH HOH . I 6 HOH A 27 227 61 HOH HOH . I 6 HOH A 28 228 101 HOH HOH . I 6 HOH A 29 229 87 HOH HOH . I 6 HOH A 30 230 97 HOH HOH . I 6 HOH A 31 231 95 HOH HOH . J 6 HOH B 1 301 62 HOH HOH . J 6 HOH B 2 302 8 HOH HOH . J 6 HOH B 3 303 66 HOH HOH . J 6 HOH B 4 304 2 HOH HOH . J 6 HOH B 5 305 3 HOH HOH . J 6 HOH B 6 306 23 HOH HOH . J 6 HOH B 7 307 14 HOH HOH . J 6 HOH B 8 308 113 HOH HOH . J 6 HOH B 9 309 39 HOH HOH . J 6 HOH B 10 310 24 HOH HOH . J 6 HOH B 11 311 48 HOH HOH . J 6 HOH B 12 312 76 HOH HOH . J 6 HOH B 13 313 37 HOH HOH . J 6 HOH B 14 314 71 HOH HOH . J 6 HOH B 15 315 36 HOH HOH . J 6 HOH B 16 316 64 HOH HOH . J 6 HOH B 17 317 118 HOH HOH . J 6 HOH B 18 318 81 HOH HOH . J 6 HOH B 19 319 53 HOH HOH . J 6 HOH B 20 320 82 HOH HOH . J 6 HOH B 21 321 122 HOH HOH . J 6 HOH B 22 322 115 HOH HOH . J 6 HOH B 23 323 102 HOH HOH . J 6 HOH B 24 324 103 HOH HOH . K 6 HOH C 1 301 91 HOH HOH . K 6 HOH C 2 302 45 HOH HOH . K 6 HOH C 3 303 92 HOH HOH . K 6 HOH C 4 304 5 HOH HOH . K 6 HOH C 5 305 22 HOH HOH . K 6 HOH C 6 306 10 HOH HOH . K 6 HOH C 7 307 73 HOH HOH . K 6 HOH C 8 308 88 HOH HOH . K 6 HOH C 9 309 17 HOH HOH . K 6 HOH C 10 310 58 HOH HOH . K 6 HOH C 11 311 21 HOH HOH . K 6 HOH C 12 312 114 HOH HOH . K 6 HOH C 13 313 1 HOH HOH . K 6 HOH C 14 314 35 HOH HOH . K 6 HOH C 15 315 28 HOH HOH . K 6 HOH C 16 316 107 HOH HOH . K 6 HOH C 17 317 57 HOH HOH . K 6 HOH C 18 318 69 HOH HOH . K 6 HOH C 19 319 20 HOH HOH . K 6 HOH C 20 320 44 HOH HOH . K 6 HOH C 21 321 46 HOH HOH . K 6 HOH C 22 322 72 HOH HOH . K 6 HOH C 23 323 75 HOH HOH . K 6 HOH C 24 324 15 HOH HOH . K 6 HOH C 25 325 111 HOH HOH . K 6 HOH C 26 326 110 HOH HOH . K 6 HOH C 27 327 120 HOH HOH . K 6 HOH C 28 328 117 HOH HOH . K 6 HOH C 29 329 79 HOH HOH . K 6 HOH C 30 330 84 HOH HOH . L 6 HOH D 1 301 63 HOH HOH . L 6 HOH D 2 302 25 HOH HOH . L 6 HOH D 3 303 67 HOH HOH . L 6 HOH D 4 304 99 HOH HOH . L 6 HOH D 5 305 26 HOH HOH . L 6 HOH D 6 306 116 HOH HOH . L 6 HOH D 7 307 41 HOH HOH . L 6 HOH D 8 308 89 HOH HOH . L 6 HOH D 9 309 6 HOH HOH . L 6 HOH D 10 310 54 HOH HOH . L 6 HOH D 11 311 86 HOH HOH . L 6 HOH D 12 312 11 HOH HOH . L 6 HOH D 13 313 123 HOH HOH . L 6 HOH D 14 314 55 HOH HOH . L 6 HOH D 15 315 31 HOH HOH . L 6 HOH D 16 316 59 HOH HOH . L 6 HOH D 17 317 43 HOH HOH . L 6 HOH D 18 318 109 HOH HOH . L 6 HOH D 19 319 9 HOH HOH . L 6 HOH D 20 320 18 HOH HOH . L 6 HOH D 21 321 29 HOH HOH . L 6 HOH D 22 322 32 HOH HOH . L 6 HOH D 23 323 12 HOH HOH . L 6 HOH D 24 324 38 HOH HOH . L 6 HOH D 25 325 100 HOH HOH . L 6 HOH D 26 326 52 HOH HOH . L 6 HOH D 27 327 47 HOH HOH . L 6 HOH D 28 328 68 HOH HOH . L 6 HOH D 29 329 85 HOH HOH . L 6 HOH D 30 330 30 HOH HOH . L 6 HOH D 31 331 96 HOH HOH . L 6 HOH D 32 332 65 HOH HOH . L 6 HOH D 33 333 104 HOH HOH . L 6 HOH D 34 334 106 HOH HOH . L 6 HOH D 35 335 105 HOH HOH . L 6 HOH D 36 336 94 HOH HOH . L 6 HOH D 37 337 83 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PEG . . . G 5 3.947 0.818 -45.633 1 74.1 ? C1 PEG 201 D 1 HETATM 2 O O1 PEG . . . G 5 3.056 1.13 -46.605 1 76.22 ? O1 PEG 201 D 1 HETATM 3 C C2 PEG . . . G 5 3.239 0.69 -44.31 1 72.12 ? C2 PEG 201 D 1 HETATM 4 O O2 PEG . . . G 5 4.191 0.464 -43.284 1 71.67 ? O2 PEG 201 D 1 HETATM 5 C C3 PEG . . . G 5 3.724 0.699 -41.942 1 72.16 ? C3 PEG 201 D 1 HETATM 6 C C4 PEG . . . G 5 3.585 -0.617 -41.211 1 71.52 ? C4 PEG 201 D 1 HETATM 7 O O4 PEG . . . G 5 3.404 -0.38 -39.84 1 69.6 ? O4 PEG 201 D 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 7 #