data_5BQB
#
_model_server_result.job_id            uRoMiea1AXlY3UTpQemf_A 
_model_server_result.datetime_utc      '2024-12-04 19:38:21' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5bqb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":202}' 
#
_entry.id    5BQB 
#
_exptl.entry_id    5BQB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              192.124 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CITRIC ACID' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          93.97 
_cell.angle_gamma         90 
_cell.entry_id            5BQB 
_cell.length_a            86.761 
_cell.length_b            38.095 
_cell.length_c            177.197 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5BQB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 software_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,K,L 1 1 
C,D,H,I,J,M,N 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 H N N 
? 2 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 18 A CYS 39 1_555 A SG CYS 75 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf2 A SG CYS 34 A CYS 55 1_555 A SG CYS 89 A CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf3 A SG CYS 44 A CYS 65 1_555 A SG CYS 105 A CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf4 A SG CYS 48 A CYS 69 1_555 A SG CYS 107 A CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf5 A SG CYS 72 A CYS 93 1_555 B SG CYS 74 B CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf6 A SG CYS 74 A CYS 95 1_555 B SG CYS 72 B CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf7 A SG CYS 110 A CYS 131 1_555 B SG CYS 110 B CYS 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
disulf ? disulf8 B SG CYS 18 B CYS 39 1_555 B SG CYS 75 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf9 B SG CYS 34 B CYS 55 1_555 B SG CYS 89 B CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf10 B SG CYS 44 B CYS 65 1_555 B SG CYS 105 B CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf11 B SG CYS 48 B CYS 69 1_555 B SG CYS 107 B CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf12 C SG CYS 18 C CYS 39 1_555 C SG CYS 75 C CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf13 C SG CYS 34 C CYS 55 1_555 C SG CYS 89 C CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf14 C SG CYS 44 C CYS 65 1_555 C SG CYS 105 C CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf15 C SG CYS 48 C CYS 69 1_555 C SG CYS 107 C CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf16 C SG CYS 72 C CYS 93 1_555 D SG CYS 74 D CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf17 C SG CYS 74 C CYS 95 1_555 D SG CYS 72 D CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf18 C SG CYS 110 C CYS 131 1_555 D SG CYS 110 D CYS 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf19 D SG CYS 18 D CYS 39 1_555 D SG CYS 75 D CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf20 D SG CYS 34 D CYS 55 1_555 D SG CYS 89 D CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf21 D SG CYS 44 D CYS 65 1_555 D SG CYS 105 D CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf22 D SG CYS 48 D CYS 69 1_555 D SG CYS 107 D CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
#
_chem_comp.formula           'C6 H8 O7' 
_chem_comp.formula_weight    192.124 
_chem_comp.id                CIT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CITRIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 CIT doub 70 n n 
C1 O2 CIT sing 71 n n 
C1 C2 CIT sing 72 n n 
O2 HO2 CIT sing 73 n n 
C2 C3 CIT sing 74 n n 
C2 H21 CIT sing 75 n n 
C2 H22 CIT sing 76 n n 
C3 O7 CIT sing 77 n n 
C3 C4 CIT sing 78 n n 
C3 C6 CIT sing 79 n n 
O7 HO7 CIT sing 80 n n 
C4 C5 CIT sing 81 n n 
C4 H41 CIT sing 82 n n 
C4 H42 CIT sing 83 n n 
C5 O3 CIT doub 84 n n 
C5 O4 CIT sing 85 n n 
O4 HO4 CIT sing 86 n n 
C6 O5 CIT doub 87 n n 
C6 O6 CIT sing 88 n n 
O6 HO6 CIT sing 89 n n 
#
_atom_sites.entry_id                     5BQB 
_atom_sites.fract_transf_matrix[1][1]    0.011526 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.0008 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.02625 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005657 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 CIT A 1 201 1 CIT CIT . 
F 2 CIT A 1 202 2 CIT CIT . 
G 3 CL A 1 203 6 CL CL . 
H 2 CIT C 1 201 3 CIT CIT . 
I 2 CIT C 1 202 4 CIT CIT . 
J 3 CL D 1 201 5 CL CL . 
K 4 HOH A 1 301 5 HOH HOH . 
K 4 HOH A 2 302 32 HOH HOH . 
K 4 HOH A 3 303 33 HOH HOH . 
K 4 HOH A 4 304 16 HOH HOH . 
K 4 HOH A 5 305 15 HOH HOH . 
K 4 HOH A 6 306 7 HOH HOH . 
K 4 HOH A 7 307 8 HOH HOH . 
K 4 HOH A 8 308 10 HOH HOH . 
K 4 HOH A 9 309 13 HOH HOH . 
K 4 HOH A 10 310 14 HOH HOH . 
K 4 HOH A 11 311 40 HOH HOH . 
K 4 HOH A 12 312 37 HOH HOH . 
K 4 HOH A 13 313 31 HOH HOH . 
K 4 HOH A 14 314 1 HOH HOH . 
K 4 HOH A 15 315 41 HOH HOH . 
K 4 HOH A 16 316 3 HOH HOH . 
K 4 HOH A 17 317 6 HOH HOH . 
K 4 HOH A 18 318 12 HOH HOH . 
K 4 HOH A 19 319 22 HOH HOH . 
K 4 HOH A 20 320 30 HOH HOH . 
K 4 HOH A 21 321 34 HOH HOH . 
K 4 HOH A 22 322 38 HOH HOH . 
K 4 HOH A 23 323 18 HOH HOH . 
K 4 HOH A 24 324 35 HOH HOH . 
K 4 HOH A 25 325 63 HOH HOH . 
K 4 HOH A 26 326 2 HOH HOH . 
K 4 HOH A 27 327 69 HOH HOH . 
K 4 HOH A 28 328 67 HOH HOH . 
K 4 HOH A 29 329 64 HOH HOH . 
K 4 HOH A 30 330 44 HOH HOH . 
K 4 HOH A 31 331 65 HOH HOH . 
K 4 HOH A 32 332 70 HOH HOH . 
K 4 HOH A 33 333 25 HOH HOH . 
K 4 HOH A 34 334 66 HOH HOH . 
K 4 HOH A 35 335 19 HOH HOH . 
K 4 HOH A 36 336 71 HOH HOH . 
K 4 HOH A 37 337 21 HOH HOH . 
K 4 HOH A 38 338 72 HOH HOH . 
K 4 HOH A 39 339 68 HOH HOH . 
L 4 HOH B 1 201 27 HOH HOH . 
L 4 HOH B 2 202 11 HOH HOH . 
L 4 HOH B 3 203 28 HOH HOH . 
L 4 HOH B 4 204 24 HOH HOH . 
L 4 HOH B 5 205 20 HOH HOH . 
L 4 HOH B 6 206 17 HOH HOH . 
L 4 HOH B 7 207 45 HOH HOH . 
L 4 HOH B 8 208 9 HOH HOH . 
L 4 HOH B 9 209 23 HOH HOH . 
L 4 HOH B 10 210 42 HOH HOH . 
L 4 HOH B 11 211 4 HOH HOH . 
L 4 HOH B 12 212 58 HOH HOH . 
L 4 HOH B 13 213 43 HOH HOH . 
L 4 HOH B 14 214 39 HOH HOH . 
L 4 HOH B 15 215 61 HOH HOH . 
L 4 HOH B 16 216 29 HOH HOH . 
L 4 HOH B 17 217 26 HOH HOH . 
L 4 HOH B 18 218 48 HOH HOH . 
L 4 HOH B 19 219 59 HOH HOH . 
L 4 HOH B 20 220 36 HOH HOH . 
L 4 HOH B 21 221 60 HOH HOH . 
L 4 HOH B 22 222 57 HOH HOH . 
L 4 HOH B 23 223 47 HOH HOH . 
L 4 HOH B 24 224 62 HOH HOH . 
L 4 HOH B 25 225 46 HOH HOH . 
M 4 HOH C 1 301 56 HOH HOH . 
M 4 HOH C 2 302 51 HOH HOH . 
M 4 HOH C 3 303 52 HOH HOH . 
M 4 HOH C 4 304 55 HOH HOH . 
M 4 HOH C 5 305 54 HOH HOH . 
M 4 HOH C 6 306 50 HOH HOH . 
M 4 HOH C 7 307 49 HOH HOH . 
N 4 HOH D 1 301 53 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 CIT . . . F 2 13.413 -6.768 -0.195 1 154.59 ? C1 CIT 202 A 1 
HETATM 2 O O1 CIT . . . F 2 12.366 -7.463 -0.256 1 136.65 ? O1 CIT 202 A 1 
HETATM 3 O O2 CIT . . . F 2 13.526 -5.949 0.749 1 163.72 ? O2 CIT 202 A 1 
HETATM 4 C C2 CIT . . . F 2 14.496 -6.932 -1.236 1 166.97 ? C2 CIT 202 A 1 
HETATM 5 C C3 CIT . . . F 2 15.423 -5.732 -1.321 1 168.79 ? C3 CIT 202 A 1 
HETATM 6 O O7 CIT . . . F 2 16.246 -5.659 -0.138 1 160.39 ? O7 CIT 202 A 1 
HETATM 7 C C4 CIT . . . F 2 16.287 -5.838 -2.561 1 160.37 ? C4 CIT 202 A 1 
HETATM 8 C C5 CIT . . . F 2 17.63 -5.186 -2.333 1 148.64 ? C5 CIT 202 A 1 
HETATM 9 O O3 CIT . . . F 2 18.453 -5.082 -3.282 1 145.4 ? O3 CIT 202 A 1 
HETATM 10 O O4 CIT . . . F 2 17.925 -4.748 -1.194 1 132.4 ? O4 CIT 202 A 1 
HETATM 11 C C6 CIT . . . F 2 14.609 -4.458 -1.387 1 195.02 ? C6 CIT 202 A 1 
HETATM 12 O O5 CIT . . . F 2 13.628 -4.395 -2.161 1 200.35 ? O5 CIT 202 A 1 
HETATM 13 O O6 CIT . . . F 2 14.903 -3.471 -0.667 1 200.87 ? O6 CIT 202 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           268 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           13 
#