data_5BQE # _model_server_result.job_id wb_QpTUShp6Cl5uwsxvZtA _model_server_result.datetime_utc '2024-11-05 23:57:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5bqe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":201}' # _entry.id 5BQE # _exptl.entry_id 5BQE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 5 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5BQE _cell.length_a 98.92 _cell.length_b 98.92 _cell.length_c 120.42 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5BQE _symmetry.cell_setting ? _symmetry.Int_Tables_number 95 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K 1 1 C,F,G,H,K 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_544 x,-y-1,-z-1/2 1 0 0 0 -1 0 0 0 -1 0 -98.92 -60.21 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 18 A CYS 39 1_555 A SG CYS 75 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 A SG CYS 34 A CYS 55 1_555 A SG CYS 89 A CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? disulf ? disulf3 A SG CYS 44 A CYS 65 1_555 A SG CYS 105 A CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf4 A SG CYS 48 A CYS 69 1_555 A SG CYS 107 A CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf5 A SG CYS 72 A CYS 93 1_555 B SG CYS 74 B CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? disulf ? disulf6 A SG CYS 74 A CYS 95 1_555 B SG CYS 72 B CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.964 ? disulf ? disulf7 A SG CYS 110 A CYS 131 1_555 B SG CYS 110 B CYS 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf8 B SG CYS 18 B CYS 39 1_555 B SG CYS 75 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? disulf ? disulf9 B SG CYS 34 B CYS 55 1_555 B SG CYS 89 B CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? disulf ? disulf10 B SG CYS 44 B CYS 65 1_555 B SG CYS 105 B CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf11 B SG CYS 48 B CYS 69 1_555 B SG CYS 107 B CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf12 C SG CYS 7 C CYS 45 1_555 C SG CYS 68 C CYS 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf13 C SG CYS 15 C CYS 53 1_555 C SG CYS 61 C CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.966 ? disulf ? disulf14 C SG CYS 52 C CYS 90 1_555 C SG CYS 90 C CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? disulf ? disulf15 C SG CYS 79 C CYS 117 1_555 C SG CYS 120 C CYS 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.974 ? disulf ? disulf16 C SG CYS 83 C CYS 121 1_555 C SG CYS 107 C CYS 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.987 ? covale ? covale1 B C SER 36 B SER 57 1_555 B N MLY 37 B MLY 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 B C MLY 37 B MLY 58 1_555 B N MET 38 B MET 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 B C LEU 64 B LEU 85 1_555 B N MLY 65 B MLY 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale4 B C MLY 65 B MLY 86 1_555 B N GLN 66 B GLN 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 B C SER 80 B SER 101 1_555 B N MLY 81 B MLY 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale6 B C MLY 81 B MLY 102 1_555 B N LEU 82 B LEU 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale7 B C LEU 82 B LEU 103 1_555 B N MLY 83 B MLY 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.309 ? covale ? covale8 B C MLY 83 B MLY 104 1_555 B N ALA 84 B ALA 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale9 C C THR 23 C THR 61 1_555 C N MLY 24 C MLY 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale10 C C MLY 24 C MLY 62 1_555 C N MET 25 C MET 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale11 C C VAL 86 C VAL 124 1_555 C N MLY 87 C MLY 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.314 ? covale ? covale12 C C MLY 87 C MLY 125 1_555 C N ARG 88 C ARG 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.311 ? covale ? covale13 C ND2 ASN 106 C ASN 144 1_555 F C1 NAG . C NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 266 n n C1 O1 NAG sing 267 n n C1 O5 NAG sing 268 n n C1 H1 NAG sing 269 n n C2 C3 NAG sing 270 n n C2 N2 NAG sing 271 n n C2 H2 NAG sing 272 n n C3 C4 NAG sing 273 n n C3 O3 NAG sing 274 n n C3 H3 NAG sing 275 n n C4 C5 NAG sing 276 n n C4 O4 NAG sing 277 n n C4 H4 NAG sing 278 n n C5 C6 NAG sing 279 n n C5 O5 NAG sing 280 n n C5 H5 NAG sing 281 n n C6 O6 NAG sing 282 n n C6 H61 NAG sing 283 n n C6 H62 NAG sing 284 n n C7 C8 NAG sing 285 n n C7 N2 NAG sing 286 n n C7 O7 NAG doub 287 n n C8 H81 NAG sing 288 n n C8 H82 NAG sing 289 n n C8 H83 NAG sing 290 n n N2 HN2 NAG sing 291 n n O1 HO1 NAG sing 292 n n O3 HO3 NAG sing 293 n n O4 HO4 NAG sing 294 n n O6 HO6 NAG sing 295 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 5BQE _atom_sites.fract_transf_matrix[1][1] 0.010109 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010109 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008304 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 PG0 B 1 201 2 PG0 PG0 . E 4 PG0 B 1 202 3 PG0 PG0 . F 5 NAG C 1 201 1 NAG NAG . G 6 CL C 1 202 1 CL CL . H 4 PG0 C 1 203 4 PG0 PG0 . I 7 HOH A 1 201 5 HOH HOH . I 7 HOH A 2 202 6 HOH HOH . I 7 HOH A 3 203 41 HOH HOH . I 7 HOH A 4 204 17 HOH HOH . I 7 HOH A 5 205 20 HOH HOH . I 7 HOH A 6 206 10 HOH HOH . I 7 HOH A 7 207 33 HOH HOH . I 7 HOH A 8 208 46 HOH HOH . I 7 HOH A 9 209 75 HOH HOH . I 7 HOH A 10 210 54 HOH HOH . I 7 HOH A 11 211 70 HOH HOH . I 7 HOH A 12 212 7 HOH HOH . I 7 HOH A 13 213 48 HOH HOH . I 7 HOH A 14 214 40 HOH HOH . I 7 HOH A 15 215 71 HOH HOH . I 7 HOH A 16 216 21 HOH HOH . I 7 HOH A 17 217 55 HOH HOH . I 7 HOH A 18 218 32 HOH HOH . I 7 HOH A 19 219 15 HOH HOH . I 7 HOH A 20 220 99 HOH HOH . I 7 HOH A 21 221 53 HOH HOH . I 7 HOH A 22 222 87 HOH HOH . I 7 HOH A 23 223 111 HOH HOH . I 7 HOH A 24 224 98 HOH HOH . I 7 HOH A 25 225 88 HOH HOH . I 7 HOH A 26 226 109 HOH HOH . I 7 HOH A 27 227 77 HOH HOH . I 7 HOH A 28 228 91 HOH HOH . I 7 HOH A 29 229 50 HOH HOH . I 7 HOH A 30 230 78 HOH HOH . I 7 HOH A 31 231 89 HOH HOH . I 7 HOH A 32 232 49 HOH HOH . J 7 HOH B 1 301 57 HOH HOH . J 7 HOH B 2 302 23 HOH HOH . J 7 HOH B 3 303 8 HOH HOH . J 7 HOH B 4 304 11 HOH HOH . J 7 HOH B 5 305 38 HOH HOH . J 7 HOH B 6 306 80 HOH HOH . J 7 HOH B 7 307 16 HOH HOH . J 7 HOH B 8 308 60 HOH HOH . J 7 HOH B 9 309 86 HOH HOH . J 7 HOH B 10 310 26 HOH HOH . J 7 HOH B 11 311 12 HOH HOH . J 7 HOH B 12 312 73 HOH HOH . J 7 HOH B 13 313 63 HOH HOH . J 7 HOH B 14 314 42 HOH HOH . J 7 HOH B 15 315 24 HOH HOH . J 7 HOH B 16 316 3 HOH HOH . J 7 HOH B 17 317 22 HOH HOH . J 7 HOH B 18 318 51 HOH HOH . J 7 HOH B 19 319 39 HOH HOH . J 7 HOH B 20 320 113 HOH HOH . J 7 HOH B 21 321 69 HOH HOH . J 7 HOH B 22 322 29 HOH HOH . J 7 HOH B 23 323 31 HOH HOH . J 7 HOH B 24 324 44 HOH HOH . J 7 HOH B 25 325 93 HOH HOH . J 7 HOH B 26 326 67 HOH HOH . J 7 HOH B 27 327 94 HOH HOH . J 7 HOH B 28 328 47 HOH HOH . J 7 HOH B 29 329 84 HOH HOH . J 7 HOH B 30 330 35 HOH HOH . J 7 HOH B 31 331 66 HOH HOH . J 7 HOH B 32 332 81 HOH HOH . J 7 HOH B 33 333 65 HOH HOH . J 7 HOH B 34 334 62 HOH HOH . J 7 HOH B 35 335 92 HOH HOH . J 7 HOH B 36 336 97 HOH HOH . J 7 HOH B 37 337 105 HOH HOH . J 7 HOH B 38 338 110 HOH HOH . J 7 HOH B 39 339 95 HOH HOH . J 7 HOH B 40 340 114 HOH HOH . J 7 HOH B 41 341 106 HOH HOH . J 7 HOH B 42 342 52 HOH HOH . J 7 HOH B 43 343 85 HOH HOH . J 7 HOH B 44 344 112 HOH HOH . J 7 HOH B 45 345 56 HOH HOH . K 7 HOH C 1 301 79 HOH HOH . K 7 HOH C 2 302 25 HOH HOH . K 7 HOH C 3 303 61 HOH HOH . K 7 HOH C 4 304 59 HOH HOH . K 7 HOH C 5 305 28 HOH HOH . K 7 HOH C 6 306 30 HOH HOH . K 7 HOH C 7 307 36 HOH HOH . K 7 HOH C 8 308 83 HOH HOH . K 7 HOH C 9 309 102 HOH HOH . K 7 HOH C 10 310 27 HOH HOH . K 7 HOH C 11 311 68 HOH HOH . K 7 HOH C 12 312 14 HOH HOH . K 7 HOH C 13 313 13 HOH HOH . K 7 HOH C 14 314 9 HOH HOH . K 7 HOH C 15 315 58 HOH HOH . K 7 HOH C 16 316 43 HOH HOH . K 7 HOH C 17 317 82 HOH HOH . K 7 HOH C 18 318 72 HOH HOH . K 7 HOH C 19 319 34 HOH HOH . K 7 HOH C 20 320 37 HOH HOH . K 7 HOH C 21 321 1 HOH HOH . K 7 HOH C 22 322 100 HOH HOH . K 7 HOH C 23 323 64 HOH HOH . K 7 HOH C 24 324 2 HOH HOH . K 7 HOH C 25 325 4 HOH HOH . K 7 HOH C 26 326 19 HOH HOH . K 7 HOH C 27 327 45 HOH HOH . K 7 HOH C 28 328 74 HOH HOH . K 7 HOH C 29 329 18 HOH HOH . K 7 HOH C 30 330 104 HOH HOH . K 7 HOH C 31 331 96 HOH HOH . K 7 HOH C 32 332 103 HOH HOH . K 7 HOH C 33 333 76 HOH HOH . K 7 HOH C 34 334 107 HOH HOH . K 7 HOH C 35 335 115 HOH HOH . K 7 HOH C 36 336 101 HOH HOH . K 7 HOH C 37 337 90 HOH HOH . K 7 HOH C 38 338 108 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . F 5 -14.056 -5.315 -24.141 1 82.41 ? C1 NAG 201 C 1 HETATM 2 C C2 NAG . . . F 5 -13.271 -4.381 -23.256 1 81.02 ? C2 NAG 201 C 1 HETATM 3 C C3 NAG . . . F 5 -12.816 -3.165 -24.021 1 85.27 ? C3 NAG 201 C 1 HETATM 4 C C4 NAG . . . F 5 -12.254 -3.48 -25.383 1 90.66 ? C4 NAG 201 C 1 HETATM 5 C C5 NAG . . . F 5 -12.979 -4.602 -26.086 1 93.74 ? C5 NAG 201 C 1 HETATM 6 C C6 NAG . . . F 5 -12.06 -5.239 -27.096 1 96.69 ? C6 NAG 201 C 1 HETATM 7 C C7 NAG . . . F 5 -13.673 -3.44 -21.099 1 86.56 ? C7 NAG 201 C 1 HETATM 8 C C8 NAG . . . F 5 -14.679 -2.965 -20.109 1 84.14 ? C8 NAG 201 C 1 HETATM 9 N N2 NAG . . . F 5 -14.155 -3.969 -22.206 1 81.55 ? N2 NAG 201 C 1 HETATM 10 O O3 NAG . . . F 5 -11.747 -2.584 -23.3 1 87.64 ? O3 NAG 201 C 1 HETATM 11 O O4 NAG . . . F 5 -12.359 -2.298 -26.166 1 93.7 ? O4 NAG 201 C 1 HETATM 12 O O5 NAG . . . F 5 -13.189 -5.652 -25.185 1 93.66 ? O5 NAG 201 C 1 HETATM 13 O O6 NAG . . . F 5 -11.559 -6.424 -26.473 1 96.17 ? O6 NAG 201 C 1 HETATM 14 O O7 NAG . . . F 5 -12.488 -3.353 -20.884 1 91.41 ? O7 NAG 201 C 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 14 #