data_5BQI # _model_server_result.job_id AllZXPiv9yww3LvQ54GDug _model_server_result.datetime_utc '2024-11-24 01:20:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5bqi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5BQI # _exptl.entry_id 5BQI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 495.445 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-(difluoromethyl)-5-{[(2-methylpropanoyl)amino]methyl}-N-{5-methyl-4-[4-(trifluoromethyl)phenyl]-1H-imidazol-2-yl}pyridine-3-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5BQI _cell.length_a 76.335 _cell.length_b 76.335 _cell.length_c 123.561 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5BQI _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C23 H22 F5 N5 O2' _chem_comp.formula_weight 495.445 _chem_comp.id 4UL _chem_comp.mon_nstd_flag . _chem_comp.name 2-(difluoromethyl)-5-{[(2-methylpropanoyl)amino]methyl}-N-{5-methyl-4-[4-(trifluoromethyl)phenyl]-1H-imidazol-2-yl}pyridine-3-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F2 C10 4UL sing 15 n n F1 C10 4UL sing 16 n n F C10 4UL sing 17 n n C10 C7 4UL sing 18 n n C7 C6 4UL doub 19 n y C7 C8 4UL sing 20 n y C6 C5 4UL sing 21 n y C8 C9 4UL doub 22 n y C5 C4 4UL doub 23 n y C9 C4 4UL sing 24 n y C4 C3 4UL sing 25 n n C20 C19 4UL sing 26 n n C21 C19 4UL sing 27 n n C19 C18 4UL sing 28 n n C3 N 4UL sing 29 n y C3 C1 4UL doub 30 n y N C 4UL doub 31 n y C18 O1 4UL doub 32 n n C18 N4 4UL sing 33 n n C1 C2 4UL sing 34 n n C1 N1 4UL sing 35 n y C N1 4UL sing 36 n y C N2 4UL sing 37 n n N4 C17 4UL sing 38 n n N2 C11 4UL sing 39 n n C17 C15 4UL sing 40 n n C16 C15 4UL doub 41 n y C16 C12 4UL sing 42 n y C11 C12 4UL sing 43 n n C11 O 4UL doub 44 n n C15 C14 4UL sing 45 n y C12 C13 4UL doub 46 n y F3 C22 4UL sing 47 n n C14 N3 4UL doub 48 n y C13 N3 4UL sing 49 n y C13 C22 4UL sing 50 n n C22 F4 4UL sing 51 n n C6 H1 4UL sing 52 n n N1 H2 4UL sing 53 n n C5 H3 4UL sing 54 n n C2 H4 4UL sing 55 n n C2 H5 4UL sing 56 n n C2 H6 4UL sing 57 n n C22 H7 4UL sing 58 n n C14 H8 4UL sing 59 n n C17 H9 4UL sing 60 n n C17 H10 4UL sing 61 n n N4 H11 4UL sing 62 n n C19 H12 4UL sing 63 n n C21 H13 4UL sing 64 n n C21 H14 4UL sing 65 n n C21 H15 4UL sing 66 n n C20 H16 4UL sing 67 n n C20 H17 4UL sing 68 n n C20 H18 4UL sing 69 n n C16 H19 4UL sing 70 n n N2 H20 4UL sing 71 n n C9 H22 4UL sing 72 n n C8 H23 4UL sing 73 n n # _atom_sites.entry_id 5BQI _atom_sites.fract_transf_matrix[1][1] 0.0131 _atom_sites.fract_transf_matrix[1][2] 0.007563 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015127 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008093 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 4UL A 1 201 1 4UL SX1 . C 3 GSH A 1 202 1 GSH GTT . D 4 BOG A 1 203 2 BOG BOG . E 4 BOG A 1 204 3 BOG BOG . F 5 PG4 A 1 205 4 PG4 PG4 . G 6 1KA A 1 206 5 1KA PG4 . H 7 HOH A 1 301 1 HOH HOH . H 7 HOH A 2 302 28 HOH HOH . H 7 HOH A 3 303 15 HOH HOH . H 7 HOH A 4 304 52 HOH HOH . H 7 HOH A 5 305 3 HOH HOH . H 7 HOH A 6 306 64 HOH HOH . H 7 HOH A 7 307 49 HOH HOH . H 7 HOH A 8 308 6 HOH HOH . H 7 HOH A 9 309 48 HOH HOH . H 7 HOH A 10 310 72 HOH HOH . H 7 HOH A 11 311 31 HOH HOH . H 7 HOH A 12 312 39 HOH HOH . H 7 HOH A 13 313 18 HOH HOH . H 7 HOH A 14 314 7 HOH HOH . H 7 HOH A 15 315 37 HOH HOH . H 7 HOH A 16 316 20 HOH HOH . H 7 HOH A 17 317 24 HOH HOH . H 7 HOH A 18 318 8 HOH HOH . H 7 HOH A 19 319 42 HOH HOH . H 7 HOH A 20 320 33 HOH HOH . H 7 HOH A 21 321 16 HOH HOH . H 7 HOH A 22 322 9 HOH HOH . H 7 HOH A 23 323 5 HOH HOH . H 7 HOH A 24 324 56 HOH HOH . H 7 HOH A 25 325 59 HOH HOH . H 7 HOH A 26 326 25 HOH HOH . H 7 HOH A 27 327 65 HOH HOH . H 7 HOH A 28 328 40 HOH HOH . H 7 HOH A 29 329 29 HOH HOH . H 7 HOH A 30 330 21 HOH HOH . H 7 HOH A 31 331 44 HOH HOH . H 7 HOH A 32 332 14 HOH HOH . H 7 HOH A 33 333 63 HOH HOH . H 7 HOH A 34 334 38 HOH HOH . H 7 HOH A 35 335 13 HOH HOH . H 7 HOH A 36 336 11 HOH HOH . H 7 HOH A 37 337 17 HOH HOH . H 7 HOH A 38 338 4 HOH HOH . H 7 HOH A 39 339 22 HOH HOH . H 7 HOH A 40 340 35 HOH HOH . H 7 HOH A 41 341 55 HOH HOH . H 7 HOH A 42 342 68 HOH HOH . H 7 HOH A 43 343 61 HOH HOH . H 7 HOH A 44 344 32 HOH HOH . H 7 HOH A 45 345 19 HOH HOH . H 7 HOH A 46 346 58 HOH HOH . H 7 HOH A 47 347 57 HOH HOH . H 7 HOH A 48 348 51 HOH HOH . H 7 HOH A 49 349 10 HOH HOH . H 7 HOH A 50 350 41 HOH HOH . H 7 HOH A 51 351 47 HOH HOH . H 7 HOH A 52 352 54 HOH HOH . H 7 HOH A 53 353 45 HOH HOH . H 7 HOH A 54 354 50 HOH HOH . H 7 HOH A 55 355 2 HOH HOH . H 7 HOH A 56 356 62 HOH HOH . H 7 HOH A 57 357 67 HOH HOH . H 7 HOH A 58 358 12 HOH HOH . H 7 HOH A 59 359 36 HOH HOH . H 7 HOH A 60 360 27 HOH HOH . H 7 HOH A 61 361 60 HOH HOH . H 7 HOH A 62 362 46 HOH HOH . H 7 HOH A 63 363 23 HOH HOH . H 7 HOH A 64 364 53 HOH HOH . H 7 HOH A 65 365 43 HOH HOH . H 7 HOH A 66 366 69 HOH HOH . H 7 HOH A 67 367 71 HOH HOH . H 7 HOH A 68 368 66 HOH HOH . H 7 HOH A 69 369 73 HOH HOH . H 7 HOH A 70 370 30 HOH HOH . H 7 HOH A 71 371 70 HOH HOH . H 7 HOH A 72 372 34 HOH HOH . H 7 HOH A 73 373 26 HOH HOH . H 7 HOH A 74 374 74 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 4UL . . . B 2 8.821 16.207 30.532 1 46.77 ? O1 4UL 201 A 1 HETATM 2 C C7 4UL . . . B 2 17.736 18.065 25.087 1 95.18 ? C7 4UL 201 A 1 HETATM 3 C C6 4UL . . . B 2 16.508 17.494 25.393 1 78.61 ? C6 4UL 201 A 1 HETATM 4 C C1 4UL . . . B 2 17.027 17.886 30.376 1 55.4 ? C1 4UL 201 A 1 HETATM 5 N N1 4UL . . . B 2 16.314 17.329 31.417 1 55.14 ? N1 4UL 201 A 1 HETATM 6 C C5 4UL . . . B 2 16.124 17.299 26.708 1 61.25 ? C5 4UL 201 A 1 HETATM 7 C C4 4UL . . . B 2 16.956 17.686 27.756 1 66.57 ? C4 4UL 201 A 1 HETATM 8 C C3 4UL . . . B 2 16.56 17.448 29.158 1 49.21 ? C3 4UL 201 A 1 HETATM 9 C C2 4UL . . . B 2 18.133 18.842 30.681 1 55.79 ? C2 4UL 201 A 1 HETATM 10 F F4 4UL . . . B 2 15.33 14.207 35.448 1 64.65 ? F4 4UL 201 A 1 HETATM 11 C C22 4UL . . . B 2 14.761 13.231 34.694 1 45.77 ? C22 4UL 201 A 1 HETATM 12 F F3 4UL . . . B 2 15.601 13.058 33.638 1 51.35 ? F3 4UL 201 A 1 HETATM 13 C C13 4UL . . . B 2 13.389 13.667 34.139 1 40.02 ? C13 4UL 201 A 1 HETATM 14 N N3 4UL . . . B 2 12.349 12.902 34.497 1 34.46 ? N3 4UL 201 A 1 HETATM 15 C C14 4UL . . . B 2 11.131 13.223 34.037 1 23.86 ? C14 4UL 201 A 1 HETATM 16 C C15 4UL . . . B 2 10.868 14.303 33.215 1 31.47 ? C15 4UL 201 A 1 HETATM 17 C C17 4UL . . . B 2 9.475 14.587 32.713 1 50.92 ? C17 4UL 201 A 1 HETATM 18 N N4 4UL . . . B 2 9.293 14.163 31.33 1 52.15 ? N4 4UL 201 A 1 HETATM 19 C C18 4UL . . . B 2 9.088 15.026 30.329 1 47.52 ? C18 4UL 201 A 1 HETATM 20 C C19 4UL . . . B 2 9.193 14.456 28.927 1 45.27 ? C19 4UL 201 A 1 HETATM 21 C C21 4UL . . . B 2 7.849 14.563 28.204 1 35.96 ? C21 4UL 201 A 1 HETATM 22 C C20 4UL . . . B 2 10.314 15.146 28.146 1 36.2 ? C20 4UL 201 A 1 HETATM 23 C C16 4UL . . . B 2 11.951 15.085 32.832 1 27.17 ? C16 4UL 201 A 1 HETATM 24 C C12 4UL . . . B 2 13.233 14.787 33.29 1 32.17 ? C12 4UL 201 A 1 HETATM 25 C C11 4UL . . . B 2 14.339 15.696 32.846 1 44.93 ? C11 4UL 201 A 1 HETATM 26 O O 4UL . . . B 2 15.022 16.318 33.657 1 55.75 ? O 4UL 201 A 1 HETATM 27 N N2 4UL . . . B 2 14.517 15.798 31.486 1 41.69 ? N2 4UL 201 A 1 HETATM 28 C C 4UL . . . B 2 15.438 16.552 30.801 1 50.46 ? C 4UL 201 A 1 HETATM 29 N N 4UL . . . B 2 15.54 16.575 29.454 1 48.98 ? N 4UL 201 A 1 HETATM 30 C C9 4UL . . . B 2 18.196 18.242 27.448 1 104 ? C9 4UL 201 A 1 HETATM 31 C C8 4UL . . . B 2 18.574 18.437 26.131 1 56.75 ? C8 4UL 201 A 1 HETATM 32 C C10 4UL . . . B 2 18.149 18.271 23.666 1 86.42 ? C10 4UL 201 A 1 HETATM 33 F F2 4UL . . . B 2 17.659 17.342 22.848 1 77.97 ? F2 4UL 201 A 1 HETATM 34 F F1 4UL . . . B 2 17.746 19.44 23.177 1 134.8 ? F1 4UL 201 A 1 HETATM 35 F F 4UL . . . B 2 19.469 18.233 23.504 1 99.96 ? F 4UL 201 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 35 #