data_5BQI # _model_server_result.job_id 9UcoIgtNfpb0Om5iC8TBEA _model_server_result.datetime_utc '2024-10-18 19:29:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5bqi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":205}' # _entry.id 5BQI # _exptl.entry_id 5BQI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 194.226 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TETRAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5BQI _cell.length_a 76.335 _cell.length_b 76.335 _cell.length_c 123.561 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5BQI _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C8 H18 O5' _chem_comp.formula_weight 194.226 _chem_comp.id PG4 _chem_comp.mon_nstd_flag . _chem_comp.name 'TETRAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 PG4 sing 394 n n O1 HO1 PG4 sing 395 n n C1 C2 PG4 sing 396 n n C1 H11 PG4 sing 397 n n C1 H12 PG4 sing 398 n n C2 O2 PG4 sing 399 n n C2 H21 PG4 sing 400 n n C2 H22 PG4 sing 401 n n O2 C3 PG4 sing 402 n n C3 C4 PG4 sing 403 n n C3 H31 PG4 sing 404 n n C3 H32 PG4 sing 405 n n C4 O3 PG4 sing 406 n n C4 H41 PG4 sing 407 n n C4 H42 PG4 sing 408 n n O3 C5 PG4 sing 409 n n C5 C6 PG4 sing 410 n n C5 H51 PG4 sing 411 n n C5 H52 PG4 sing 412 n n C6 O4 PG4 sing 413 n n C6 H61 PG4 sing 414 n n C6 H62 PG4 sing 415 n n O4 C7 PG4 sing 416 n n C7 C8 PG4 sing 417 n n C7 H71 PG4 sing 418 n n C7 H72 PG4 sing 419 n n C8 O5 PG4 sing 420 n n C8 H81 PG4 sing 421 n n C8 H82 PG4 sing 422 n n O5 HO5 PG4 sing 423 n n # _atom_sites.entry_id 5BQI _atom_sites.fract_transf_matrix[1][1] 0.0131 _atom_sites.fract_transf_matrix[1][2] 0.007563 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015127 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008093 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 4UL A 1 201 1 4UL SX1 . C 3 GSH A 1 202 1 GSH GTT . D 4 BOG A 1 203 2 BOG BOG . E 4 BOG A 1 204 3 BOG BOG . F 5 PG4 A 1 205 4 PG4 PG4 . G 6 1KA A 1 206 5 1KA PG4 . H 7 HOH A 1 301 1 HOH HOH . H 7 HOH A 2 302 28 HOH HOH . H 7 HOH A 3 303 15 HOH HOH . H 7 HOH A 4 304 52 HOH HOH . H 7 HOH A 5 305 3 HOH HOH . H 7 HOH A 6 306 64 HOH HOH . H 7 HOH A 7 307 49 HOH HOH . H 7 HOH A 8 308 6 HOH HOH . H 7 HOH A 9 309 48 HOH HOH . H 7 HOH A 10 310 72 HOH HOH . H 7 HOH A 11 311 31 HOH HOH . H 7 HOH A 12 312 39 HOH HOH . H 7 HOH A 13 313 18 HOH HOH . H 7 HOH A 14 314 7 HOH HOH . H 7 HOH A 15 315 37 HOH HOH . H 7 HOH A 16 316 20 HOH HOH . H 7 HOH A 17 317 24 HOH HOH . H 7 HOH A 18 318 8 HOH HOH . H 7 HOH A 19 319 42 HOH HOH . H 7 HOH A 20 320 33 HOH HOH . H 7 HOH A 21 321 16 HOH HOH . H 7 HOH A 22 322 9 HOH HOH . H 7 HOH A 23 323 5 HOH HOH . H 7 HOH A 24 324 56 HOH HOH . H 7 HOH A 25 325 59 HOH HOH . H 7 HOH A 26 326 25 HOH HOH . H 7 HOH A 27 327 65 HOH HOH . H 7 HOH A 28 328 40 HOH HOH . H 7 HOH A 29 329 29 HOH HOH . H 7 HOH A 30 330 21 HOH HOH . H 7 HOH A 31 331 44 HOH HOH . H 7 HOH A 32 332 14 HOH HOH . H 7 HOH A 33 333 63 HOH HOH . H 7 HOH A 34 334 38 HOH HOH . H 7 HOH A 35 335 13 HOH HOH . H 7 HOH A 36 336 11 HOH HOH . H 7 HOH A 37 337 17 HOH HOH . H 7 HOH A 38 338 4 HOH HOH . H 7 HOH A 39 339 22 HOH HOH . H 7 HOH A 40 340 35 HOH HOH . H 7 HOH A 41 341 55 HOH HOH . H 7 HOH A 42 342 68 HOH HOH . H 7 HOH A 43 343 61 HOH HOH . H 7 HOH A 44 344 32 HOH HOH . H 7 HOH A 45 345 19 HOH HOH . H 7 HOH A 46 346 58 HOH HOH . H 7 HOH A 47 347 57 HOH HOH . H 7 HOH A 48 348 51 HOH HOH . H 7 HOH A 49 349 10 HOH HOH . H 7 HOH A 50 350 41 HOH HOH . H 7 HOH A 51 351 47 HOH HOH . H 7 HOH A 52 352 54 HOH HOH . H 7 HOH A 53 353 45 HOH HOH . H 7 HOH A 54 354 50 HOH HOH . H 7 HOH A 55 355 2 HOH HOH . H 7 HOH A 56 356 62 HOH HOH . H 7 HOH A 57 357 67 HOH HOH . H 7 HOH A 58 358 12 HOH HOH . H 7 HOH A 59 359 36 HOH HOH . H 7 HOH A 60 360 27 HOH HOH . H 7 HOH A 61 361 60 HOH HOH . H 7 HOH A 62 362 46 HOH HOH . H 7 HOH A 63 363 23 HOH HOH . H 7 HOH A 64 364 53 HOH HOH . H 7 HOH A 65 365 43 HOH HOH . H 7 HOH A 66 366 69 HOH HOH . H 7 HOH A 67 367 71 HOH HOH . H 7 HOH A 68 368 66 HOH HOH . H 7 HOH A 69 369 73 HOH HOH . H 7 HOH A 70 370 30 HOH HOH . H 7 HOH A 71 371 70 HOH HOH . H 7 HOH A 72 372 34 HOH HOH . H 7 HOH A 73 373 26 HOH HOH . H 7 HOH A 74 374 74 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 PG4 . . . F 5 14.27 19.556 7.449 1 104.89 ? O1 PG4 205 A 1 HETATM 2 C C1 PG4 . . . F 5 14.98 20.236 8.492 1 86.69 ? C1 PG4 205 A 1 HETATM 3 C C2 PG4 . . . F 5 14.069 20.393 9.707 1 155.25 ? C2 PG4 205 A 1 HETATM 4 O O2 PG4 . . . F 5 13.836 19.119 10.309 1 142.08 ? O2 PG4 205 A 1 HETATM 5 C C3 PG4 . . . F 5 14.108 19.131 11.712 1 85.04 ? C3 PG4 205 A 1 HETATM 6 C C4 PG4 . . . F 5 13.526 17.88 12.363 1 89 ? C4 PG4 205 A 1 HETATM 7 O O3 PG4 . . . F 5 14.582 17.041 12.832 1 84.53 ? O3 PG4 205 A 1 HETATM 8 C C5 PG4 . . . F 5 14.247 15.659 12.715 1 63.41 ? C5 PG4 205 A 1 HETATM 9 C C6 PG4 . . . F 5 15.495 14.8 12.877 1 73.86 ? C6 PG4 205 A 1 HETATM 10 O O4 PG4 . . . F 5 15.943 14.374 11.591 1 59.54 ? O4 PG4 205 A 1 HETATM 11 C C7 PG4 . . . F 5 17.102 13.545 11.665 1 96.61 ? C7 PG4 205 A 1 HETATM 12 C C8 PG4 . . . F 5 18.343 14.326 11.243 1 175.49 ? C8 PG4 205 A 1 HETATM 13 O O5 PG4 . . . F 5 18.158 14.858 9.926 1 92.22 ? O5 PG4 205 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 369 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 13 #