data_5BRD
#
_model_server_result.job_id            W56vcUchEUvNqnkxMvQ_yg 
_model_server_result.datetime_utc      '2024-12-01 06:38:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5brd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":500}' 
#
_entry.id    5BRD 
#
_exptl.entry_id    5BRD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              283.277 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-(benzoylamino)-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          94.5 
_cell.angle_gamma         90 
_cell.entry_id            5BRD 
_cell.length_a            68.567 
_cell.length_b            78.837 
_cell.length_c            76.605 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5BRD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C13 H17 N O6' 
_chem_comp.formula_weight    283.277 
_chem_comp.id                BG8 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              2-(benzoylamino)-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-benzoyl-beta-D-glucosamine;2-(benzoylamino)-2-deoxy-beta-D-glucose;2-(benzoylamino)-2-deoxy-D-glucose;2-(benzoylamino)-2-deoxy-glucose 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O6 C6 BG8 sing 70 n n 
C6 C5 BG8 sing 71 n n 
O5 C5 BG8 sing 72 n n 
O5 C1 BG8 sing 73 n n 
C5 C4 BG8 sing 74 n n 
C4 O4 BG8 sing 75 n n 
C4 C3 BG8 sing 76 n n 
O15 C13 BG8 doub 77 n n 
O1 C1 BG8 sing 78 n n 
C1 C2 BG8 sing 79 n n 
C2 C3 BG8 sing 80 n n 
C2 N2 BG8 sing 81 n n 
O3 C3 BG8 sing 82 n n 
C13 N2 BG8 sing 83 n n 
C13 C16 BG8 sing 84 n n 
C17 C16 BG8 doub 85 n y 
C17 C18 BG8 sing 86 n y 
C16 C14 BG8 sing 87 n y 
C18 C19 BG8 doub 88 n y 
C14 C20 BG8 doub 89 n y 
C19 C20 BG8 sing 90 n y 
C3 H3 BG8 sing 91 n n 
C2 H2 BG8 sing 92 n n 
C1 H1 BG8 sing 93 n n 
C5 H5 BG8 sing 94 n n 
C4 H4 BG8 sing 95 n n 
N2 HN21 BG8 sing 96 n n 
O4 HO4 BG8 sing 97 n n 
O3 HO3 BG8 sing 98 n n 
C6 H61 BG8 sing 99 n n 
C6 H62 BG8 sing 100 n n 
O1 HO1 BG8 sing 101 n n 
O6 HO6 BG8 sing 102 n n 
C14 H13 BG8 sing 103 n n 
C17 H14 BG8 sing 104 n n 
C18 H15 BG8 sing 105 n n 
C19 H16 BG8 sing 106 n n 
C20 H17 BG8 sing 107 n n 
#
_atom_sites.entry_id                     5BRD 
_atom_sites.fract_transf_matrix[1][1]    0.014584 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001148 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012684 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013094 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 BG8 A 1 500 500 BG8 BG8 . 
D 2 BG8 B 1 500 500 BG8 BG8 . 
E 3 HOH A 1 601 83 HOH HOH . 
E 3 HOH A 2 602 82 HOH HOH . 
E 3 HOH A 3 603 44 HOH HOH . 
E 3 HOH A 4 604 25 HOH HOH . 
E 3 HOH A 5 605 17 HOH HOH . 
E 3 HOH A 6 606 45 HOH HOH . 
E 3 HOH A 7 607 10 HOH HOH . 
E 3 HOH A 8 608 29 HOH HOH . 
E 3 HOH A 9 609 38 HOH HOH . 
E 3 HOH A 10 610 15 HOH HOH . 
E 3 HOH A 11 611 36 HOH HOH . 
E 3 HOH A 12 612 9 HOH HOH . 
E 3 HOH A 13 613 20 HOH HOH . 
E 3 HOH A 14 614 8 HOH HOH . 
E 3 HOH A 15 615 30 HOH HOH . 
E 3 HOH A 16 616 60 HOH HOH . 
E 3 HOH A 17 617 56 HOH HOH . 
E 3 HOH A 18 618 42 HOH HOH . 
E 3 HOH A 19 619 5 HOH HOH . 
E 3 HOH A 20 620 81 HOH HOH . 
E 3 HOH A 21 621 58 HOH HOH . 
E 3 HOH A 22 622 31 HOH HOH . 
E 3 HOH A 23 623 50 HOH HOH . 
E 3 HOH A 24 624 16 HOH HOH . 
E 3 HOH A 25 625 70 HOH HOH . 
E 3 HOH A 26 626 79 HOH HOH . 
E 3 HOH A 27 627 75 HOH HOH . 
E 3 HOH A 28 628 86 HOH HOH . 
E 3 HOH A 29 629 51 HOH HOH . 
E 3 HOH A 30 630 27 HOH HOH . 
E 3 HOH A 31 631 18 HOH HOH . 
E 3 HOH A 32 632 71 HOH HOH . 
E 3 HOH A 33 633 3 HOH HOH . 
E 3 HOH A 34 634 4 HOH HOH . 
E 3 HOH A 35 635 23 HOH HOH . 
E 3 HOH A 36 636 1 HOH HOH . 
E 3 HOH A 37 637 46 HOH HOH . 
E 3 HOH A 38 638 63 HOH HOH . 
E 3 HOH A 39 639 55 HOH HOH . 
E 3 HOH A 40 640 67 HOH HOH . 
E 3 HOH A 41 641 85 HOH HOH . 
E 3 HOH A 42 642 84 HOH HOH . 
E 3 HOH A 43 643 47 HOH HOH . 
E 3 HOH A 44 644 68 HOH HOH . 
E 3 HOH A 45 645 78 HOH HOH . 
F 3 HOH B 1 601 33 HOH HOH . 
F 3 HOH B 2 602 64 HOH HOH . 
F 3 HOH B 3 603 87 HOH HOH . 
F 3 HOH B 4 604 76 HOH HOH . 
F 3 HOH B 5 605 57 HOH HOH . 
F 3 HOH B 6 606 73 HOH HOH . 
F 3 HOH B 7 607 22 HOH HOH . 
F 3 HOH B 8 608 28 HOH HOH . 
F 3 HOH B 9 609 12 HOH HOH . 
F 3 HOH B 10 610 6 HOH HOH . 
F 3 HOH B 11 611 69 HOH HOH . 
F 3 HOH B 12 612 74 HOH HOH . 
F 3 HOH B 13 613 77 HOH HOH . 
F 3 HOH B 14 614 2 HOH HOH . 
F 3 HOH B 15 615 14 HOH HOH . 
F 3 HOH B 16 616 65 HOH HOH . 
F 3 HOH B 17 617 41 HOH HOH . 
F 3 HOH B 18 618 21 HOH HOH . 
F 3 HOH B 19 619 13 HOH HOH . 
F 3 HOH B 20 620 52 HOH HOH . 
F 3 HOH B 21 621 43 HOH HOH . 
F 3 HOH B 22 622 49 HOH HOH . 
F 3 HOH B 23 623 40 HOH HOH . 
F 3 HOH B 24 624 37 HOH HOH . 
F 3 HOH B 25 625 19 HOH HOH . 
F 3 HOH B 26 626 7 HOH HOH . 
F 3 HOH B 27 627 35 HOH HOH . 
F 3 HOH B 28 628 72 HOH HOH . 
F 3 HOH B 29 629 26 HOH HOH . 
F 3 HOH B 30 630 39 HOH HOH . 
F 3 HOH B 31 631 48 HOH HOH . 
F 3 HOH B 32 632 11 HOH HOH . 
F 3 HOH B 33 633 34 HOH HOH . 
F 3 HOH B 34 634 54 HOH HOH . 
F 3 HOH B 35 635 53 HOH HOH . 
F 3 HOH B 36 636 32 HOH HOH . 
F 3 HOH B 37 637 62 HOH HOH . 
F 3 HOH B 38 638 59 HOH HOH . 
F 3 HOH B 39 639 80 HOH HOH . 
F 3 HOH B 40 640 24 HOH HOH . 
F 3 HOH B 41 641 61 HOH HOH . 
F 3 HOH B 42 642 66 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C3 BG8 . . . C 2 9.736 -11.46 33.975 1 28.01 ? C3 BG8 500 A 1 
HETATM 2 C C2 BG8 . . . C 2 8.455 -10.665 33.683 1 25.24 ? C2 BG8 500 A 1 
HETATM 3 C C1 BG8 . . . C 2 8.707 -9.162 33.658 1 23.09 ? C1 BG8 500 A 1 
HETATM 4 O O5 BG8 . . . C 2 9.631 -8.944 32.607 1 28.88 ? O5 BG8 500 A 1 
HETATM 5 C C5 BG8 . . . C 2 10.934 -9.543 32.937 1 22.27 ? C5 BG8 500 A 1 
HETATM 6 C C4 BG8 . . . C 2 10.842 -11.062 33.093 1 20.97 ? C4 BG8 500 A 1 
HETATM 7 N N2 BG8 . . . C 2 7.493 -10.988 34.698 1 28.17 ? N2 BG8 500 A 1 
HETATM 8 O O4 BG8 . . . C 2 12.099 -11.547 33.683 1 25.1 ? O4 BG8 500 A 1 
HETATM 9 O O3 BG8 . . . C 2 9.459 -12.862 33.842 1 25.4 ? O3 BG8 500 A 1 
HETATM 10 C C6 BG8 . . . C 2 11.928 -9.154 31.856 1 21.41 ? C6 BG8 500 A 1 
HETATM 11 O O1 BG8 . . . C 2 7.536 -8.535 33.337 1 34.2 ? O1 BG8 500 A 1 
HETATM 12 O O6 BG8 . . . C 2 11.528 -9.697 30.622 1 25.91 ? O6 BG8 500 A 1 
HETATM 13 C C13 BG8 . . . C 2 6.263 -11.374 34.324 1 35.27 ? C13 BG8 500 A 1 
HETATM 14 O O15 BG8 . . . C 2 5.946 -11.443 33.148 1 36.86 ? O15 BG8 500 A 1 
HETATM 15 C C14 BG8 . . . C 2 5.54 -11.445 36.711 1 31.52 ? C14 BG8 500 A 1 
HETATM 16 C C16 BG8 . . . C 2 5.283 -11.777 35.394 1 33.41 ? C16 BG8 500 A 1 
HETATM 17 C C17 BG8 . . . C 2 4.175 -12.532 35.064 1 31.41 ? C17 BG8 500 A 1 
HETATM 18 C C18 BG8 . . . C 2 3.295 -12.926 36.042 1 30.74 ? C18 BG8 500 A 1 
HETATM 19 C C19 BG8 . . . C 2 3.536 -12.581 37.354 1 34.71 ? C19 BG8 500 A 1 
HETATM 20 C C20 BG8 . . . C 2 4.654 -11.835 37.692 1 34.15 ? C20 BG8 500 A 1 
#
_model_server_stats.io_time_ms              109 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           316 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           20 
#