data_5BRE # _model_server_result.job_id 17ogXMZYeFIq8m0HGe26nQ _model_server_result.datetime_utc '2024-12-01 04:25:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5bre # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":500}' # _entry.id 5BRE # _exptl.entry_id 5BRE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 313.303 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-{[(benzyloxy)carbonyl]amino}-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.74 _cell.angle_gamma 90 _cell.entry_id 5BRE _cell.length_a 68.673 _cell.length_b 79.047 _cell.length_c 76.445 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5BRE _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C14 H19 N O7' _chem_comp.formula_weight 313.303 _chem_comp.id 4UZ _chem_comp.mon_nstd_flag n _chem_comp.name 2-{[(benzyloxy)carbonyl]amino}-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-[(benzyloxy)carbonyl]-beta-D-glucosamine;2-{[(benzyloxy)carbonyl]amino}-2-deoxy-beta-D-glucose;2-{[(benzyloxy)carbonyl]amino}-2-deoxy-D-glucose;2-{[(benzyloxy)carbonyl]amino}-2-deoxy-glucose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O6 C6 4UZ sing 1 n n C6 C5 4UZ sing 2 n n O5 C5 4UZ sing 3 n n O5 C1 4UZ sing 4 n n C5 C4 4UZ sing 5 n n C4 O4 4UZ sing 6 n n C4 C3 4UZ sing 7 n n O1 C1 4UZ sing 8 n n C1 C2 4UZ sing 9 n n O15 C13 4UZ doub 10 n n C2 C3 4UZ sing 11 n n C2 N2 4UZ sing 12 n n C3 O3 4UZ sing 13 n n C19 C20 4UZ doub 14 n y C19 C18 4UZ sing 15 n y C20 C21 4UZ sing 16 n y C13 N2 4UZ sing 17 n n C13 O14 4UZ sing 18 n n C18 C17 4UZ doub 19 n y C21 C22 4UZ doub 20 n y C17 C22 4UZ sing 21 n y C17 C16 4UZ sing 22 n n C16 O14 4UZ sing 23 n n C3 H3 4UZ sing 24 n n C2 H2 4UZ sing 25 n n C1 H1 4UZ sing 26 n n C5 H5 4UZ sing 27 n n C4 H4 4UZ sing 28 n n N2 HN21 4UZ sing 29 n n O4 HO4 4UZ sing 30 n n O3 HO3 4UZ sing 31 n n C6 H61 4UZ sing 32 n n C6 H62 4UZ sing 33 n n O1 HO1 4UZ sing 34 n n O6 HO6 4UZ sing 35 n n C16 H13 4UZ sing 36 n n C16 H14 4UZ sing 37 n n C18 H15 4UZ sing 38 n n C19 H16 4UZ sing 39 n n C20 H17 4UZ sing 40 n n C21 H18 4UZ sing 41 n n C22 H19 4UZ sing 42 n n # _atom_sites.entry_id 5BRE _atom_sites.fract_transf_matrix[1][1] 0.014562 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001208 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012651 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013126 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 4UZ A 1 500 500 4UZ CBZ . D 2 4UZ B 1 500 500 4UZ CBZ . E 3 HOH A 1 601 2 HOH HOH . E 3 HOH A 2 602 1 HOH HOH . F 3 HOH B 1 601 4 HOH HOH . F 3 HOH B 2 602 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C3 4UZ . . . C 2 -21.382 -11.76 -3.991 1 67.7 ? C3 4UZ 500 A 1 HETATM 2 C C2 4UZ . . . C 2 -22.685 -11.049 -4.367 1 67.72 ? C2 4UZ 500 A 1 HETATM 3 C C1 4UZ . . . C 2 -22.416 -9.554 -4.555 1 65.02 ? C1 4UZ 500 A 1 HETATM 4 O O5 4UZ . . . C 2 -21.5 -9.42 -5.636 1 66.19 ? O5 4UZ 500 A 1 HETATM 5 C C5 4UZ . . . C 2 -20.203 -9.997 -5.316 1 63.2 ? C5 4UZ 500 A 1 HETATM 6 C C4 4UZ . . . C 2 -20.333 -11.497 -5.004 1 64.59 ? C4 4UZ 500 A 1 HETATM 7 N N2 4UZ . . . C 2 -23.615 -11.246 -3.271 1 66.93 ? N2 4UZ 500 A 1 HETATM 8 O O4 4UZ . . . C 2 -19.067 -12.012 -4.481 1 65.47 ? O4 4UZ 500 A 1 HETATM 9 O O3 4UZ . . . C 2 -21.636 -13.162 -3.883 1 62.37 ? O3 4UZ 500 A 1 HETATM 10 C C6 4UZ . . . C 2 -19.282 -9.75 -6.514 1 64.65 ? C6 4UZ 500 A 1 HETATM 11 O O1 4UZ . . . C 2 -23.57 -8.887 -4.906 1 70.99 ? O1 4UZ 500 A 1 HETATM 12 O O6 4UZ . . . C 2 -19.995 -10.141 -7.742 1 66.68 ? O6 4UZ 500 A 1 HETATM 13 C C13 4UZ . . . C 2 -24.912 -11.558 -3.439 1 74.57 ? C13 4UZ 500 A 1 HETATM 14 O O14 4UZ . . . C 2 -25.523 -11.721 -2.197 1 77.24 ? O14 4UZ 500 A 1 HETATM 15 O O15 4UZ . . . C 2 -25.424 -11.845 -4.504 1 75.62 ? O15 4UZ 500 A 1 HETATM 16 C C16 4UZ . . . C 2 -26.586 -12.71 -2.21 1 72.52 ? C16 4UZ 500 A 1 HETATM 17 C C17 4UZ . . . C 2 -27.827 -12.024 -2.688 1 74.95 ? C17 4UZ 500 A 1 HETATM 18 C C18 4UZ . . . C 2 -28.916 -12.769 -3.198 1 75.46 ? C18 4UZ 500 A 1 HETATM 19 C C19 4UZ . . . C 2 -30.048 -12.087 -3.628 1 77 ? C19 4UZ 500 A 1 HETATM 20 C C20 4UZ . . . C 2 -30.099 -10.709 -3.56 1 76.74 ? C20 4UZ 500 A 1 HETATM 21 C C21 4UZ . . . C 2 -29.039 -9.979 -3.054 1 75.42 ? C21 4UZ 500 A 1 HETATM 22 C C22 4UZ . . . C 2 -27.905 -10.627 -2.623 1 71.47 ? C22 4UZ 500 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 22 #