data_5BRE
#
_model_server_result.job_id            -W4AwxN9xFmD-lQ38PyM0Q 
_model_server_result.datetime_utc      '2024-12-01 03:39:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5bre 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":500}' 
#
_entry.id    5BRE 
#
_exptl.entry_id    5BRE 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              313.303 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-{[(benzyloxy)carbonyl]amino}-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          94.74 
_cell.angle_gamma         90 
_cell.entry_id            5BRE 
_cell.length_a            68.673 
_cell.length_b            79.047 
_cell.length_c            76.445 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5BRE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C14 H19 N O7' 
_chem_comp.formula_weight    313.303 
_chem_comp.id                4UZ 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              2-{[(benzyloxy)carbonyl]amino}-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-[(benzyloxy)carbonyl]-beta-D-glucosamine;2-{[(benzyloxy)carbonyl]amino}-2-deoxy-beta-D-glucose;2-{[(benzyloxy)carbonyl]amino}-2-deoxy-D-glucose;2-{[(benzyloxy)carbonyl]amino}-2-deoxy-glucose 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O6 C6 4UZ sing 1 n n 
C6 C5 4UZ sing 2 n n 
O5 C5 4UZ sing 3 n n 
O5 C1 4UZ sing 4 n n 
C5 C4 4UZ sing 5 n n 
C4 O4 4UZ sing 6 n n 
C4 C3 4UZ sing 7 n n 
O1 C1 4UZ sing 8 n n 
C1 C2 4UZ sing 9 n n 
O15 C13 4UZ doub 10 n n 
C2 C3 4UZ sing 11 n n 
C2 N2 4UZ sing 12 n n 
C3 O3 4UZ sing 13 n n 
C19 C20 4UZ doub 14 n y 
C19 C18 4UZ sing 15 n y 
C20 C21 4UZ sing 16 n y 
C13 N2 4UZ sing 17 n n 
C13 O14 4UZ sing 18 n n 
C18 C17 4UZ doub 19 n y 
C21 C22 4UZ doub 20 n y 
C17 C22 4UZ sing 21 n y 
C17 C16 4UZ sing 22 n n 
C16 O14 4UZ sing 23 n n 
C3 H3 4UZ sing 24 n n 
C2 H2 4UZ sing 25 n n 
C1 H1 4UZ sing 26 n n 
C5 H5 4UZ sing 27 n n 
C4 H4 4UZ sing 28 n n 
N2 HN21 4UZ sing 29 n n 
O4 HO4 4UZ sing 30 n n 
O3 HO3 4UZ sing 31 n n 
C6 H61 4UZ sing 32 n n 
C6 H62 4UZ sing 33 n n 
O1 HO1 4UZ sing 34 n n 
O6 HO6 4UZ sing 35 n n 
C16 H13 4UZ sing 36 n n 
C16 H14 4UZ sing 37 n n 
C18 H15 4UZ sing 38 n n 
C19 H16 4UZ sing 39 n n 
C20 H17 4UZ sing 40 n n 
C21 H18 4UZ sing 41 n n 
C22 H19 4UZ sing 42 n n 
#
_atom_sites.entry_id                     5BRE 
_atom_sites.fract_transf_matrix[1][1]    0.014562 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001208 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012651 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013126 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 4UZ A 1 500 500 4UZ CBZ . 
D 2 4UZ B 1 500 500 4UZ CBZ . 
E 3 HOH A 1 601 2 HOH HOH . 
E 3 HOH A 2 602 1 HOH HOH . 
F 3 HOH B 1 601 4 HOH HOH . 
F 3 HOH B 2 602 3 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C3 4UZ . . . D 2 -12.044 -13.903 22.622 1 72.33 ? C3 4UZ 500 B 1 
HETATM 2 C C2 4UZ . . . D 2 -11.982 -12.7 23.561 1 73.83 ? C2 4UZ 500 B 1 
HETATM 3 C C1 4UZ . . . D 2 -13.38 -12.415 24.101 1 69.43 ? C1 4UZ 500 B 1 
HETATM 4 O O5 4UZ . . . D 2 -13.74 -13.55 24.872 1 69.13 ? O5 4UZ 500 B 1 
HETATM 5 C C5 4UZ . . . D 2 -13.875 -14.757 24.086 1 71.79 ? C5 4UZ 500 B 1 
HETATM 6 C C4 4UZ . . . D 2 -12.559 -15.075 23.359 1 70.72 ? C4 4UZ 500 B 1 
HETATM 7 N N2 4UZ . . . D 2 -11.566 -11.59 22.732 1 76.15 ? N2 4UZ 500 B 1 
HETATM 8 O O4 4UZ . . . D 2 -12.76 -16.163 22.403 1 71.73 ? O4 4UZ 500 B 1 
HETATM 9 O O3 4UZ . . . D 2 -10.745 -14.145 22.067 1 67.25 ? O3 4UZ 500 B 1 
HETATM 10 C C6 4UZ . . . D 2 -14.264 -15.865 25.067 1 66.72 ? C6 4UZ 500 B 1 
HETATM 11 O O1 4UZ . . . D 2 -13.354 -11.314 24.939 1 81.02 ? O1 4UZ 500 B 1 
HETATM 12 O O6 4UZ . . . D 2 -13.163 -15.971 26.035 1 70.61 ? O6 4UZ 500 B 1 
HETATM 13 C C13 4UZ . . . D 2 -10.55 -10.8 23.065 1 81.62 ? C13 4UZ 500 B 1 
HETATM 14 O O14 4UZ . . . D 2 -10.39 -9.82 22.106 1 80.69 ? O14 4UZ 500 B 1 
HETATM 15 O O15 4UZ . . . D 2 -9.918 -10.889 24.094 1 84.37 ? O15 4UZ 500 B 1 
HETATM 16 C C16 4UZ . . . D 2 -9.17 -9.05 22.245 1 77.73 ? C16 4UZ 500 B 1 
HETATM 17 C C17 4UZ . . . D 2 -9.494 -7.912 23.155 1 82.37 ? C17 4UZ 500 B 1 
HETATM 18 C C18 4UZ . . . D 2 -8.461 -7.207 23.818 1 77.41 ? C18 4UZ 500 B 1 
HETATM 19 C C19 4UZ . . . D 2 -8.805 -6.163 24.668 1 80.75 ? C19 4UZ 500 B 1 
HETATM 20 C C20 4UZ . . . D 2 -10.135 -5.828 24.843 1 87.46 ? C20 4UZ 500 B 1 
HETATM 21 C C21 4UZ . . . D 2 -11.148 -6.511 24.19 1 86.74 ? C21 4UZ 500 B 1 
HETATM 22 C C22 4UZ . . . D 2 -10.839 -7.554 23.35 1 82.52 ? C22 4UZ 500 B 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           277 
_model_server_stats.encode_time_ms          18 
_model_server_stats.element_count           22 
#