data_5BRH # _model_server_result.job_id Cm5LtSeq5DQHA0smpaIulg _model_server_result.datetime_utc '2024-11-05 04:36:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5brh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":500}' # _entry.id 5BRH # _exptl.entry_id 5BRH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 401.388 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-deoxy-2-({[(1,1-dioxido-1-benzothiophen-2-yl)methoxy]carbonyl}amino)-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.8 _cell.angle_gamma 90 _cell.entry_id 5BRH _cell.length_a 68.245 _cell.length_b 78.744 _cell.length_c 75.389 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5BRH _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C16 H19 N O9 S' _chem_comp.formula_weight 401.388 _chem_comp.id 4V3 _chem_comp.mon_nstd_flag . _chem_comp.name 2-deoxy-2-({[(1,1-dioxido-1-benzothiophen-2-yl)methoxy]carbonyl}amino)-beta-D-glucopyranose _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O09 C01 4V3 sing 1 n n O14 C16 4V3 sing 2 n n O14 C13 4V3 sing 3 n n O08 C06 4V3 sing 4 n n C01 C06 4V3 sing 5 n n C01 C02 4V3 sing 6 n n N07 C13 4V3 sing 7 n n N07 C02 4V3 sing 8 n n C16 C17 4V3 sing 9 n n C13 O15 4V3 doub 10 n n C06 C05 4V3 sing 11 n n C02 C03 4V3 sing 12 n n O27 S21 4V3 doub 13 n n C17 C18 4V3 doub 14 n n C17 S21 4V3 sing 15 n n C18 C19 4V3 sing 16 n n C05 O04 4V3 sing 17 n n C05 C10 4V3 sing 18 n n C03 O04 4V3 sing 19 n n C03 O11 4V3 sing 20 n n S21 O26 4V3 doub 21 n n S21 C20 4V3 sing 22 n n C10 O12 4V3 sing 23 n n C19 C20 4V3 doub 24 n y C19 C22 4V3 sing 25 n y C20 C25 4V3 sing 26 n y C22 C23 4V3 doub 27 n y C25 C24 4V3 doub 28 n y C23 C24 4V3 sing 29 n y C10 H1 4V3 sing 30 n n C10 H2 4V3 sing 31 n n C01 H3 4V3 sing 32 n n C02 H4 4V3 sing 33 n n C03 H5 4V3 sing 34 n n C05 H6 4V3 sing 35 n n C06 H7 4V3 sing 36 n n N07 H8 4V3 sing 37 n n O08 H9 4V3 sing 38 n n O09 H10 4V3 sing 39 n n O11 H11 4V3 sing 40 n n O12 H12 4V3 sing 41 n n C16 H13 4V3 sing 42 n n C16 H14 4V3 sing 43 n n C18 H15 4V3 sing 44 n n C22 H16 4V3 sing 45 n n C23 H17 4V3 sing 46 n n C24 H18 4V3 sing 47 n n C25 H19 4V3 sing 48 n n # _atom_sites.entry_id 5BRH _atom_sites.fract_transf_matrix[1][1] 0.014653 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001229 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012699 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013311 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 4V3 A 1 500 500 4V3 DBT . D 2 4V3 B 1 500 500 4V3 DBT . E 3 HOH A 1 601 68 HOH HOH . E 3 HOH A 2 602 116 HOH HOH . E 3 HOH A 3 603 163 HOH HOH . E 3 HOH A 4 604 110 HOH HOH . E 3 HOH A 5 605 132 HOH HOH . E 3 HOH A 6 606 118 HOH HOH . E 3 HOH A 7 607 103 HOH HOH . E 3 HOH A 8 608 77 HOH HOH . E 3 HOH A 9 609 99 HOH HOH . E 3 HOH A 10 610 66 HOH HOH . E 3 HOH A 11 611 94 HOH HOH . E 3 HOH A 12 612 76 HOH HOH . E 3 HOH A 13 613 144 HOH HOH . E 3 HOH A 14 614 137 HOH HOH . E 3 HOH A 15 615 62 HOH HOH . E 3 HOH A 16 616 88 HOH HOH . E 3 HOH A 17 617 175 HOH HOH . E 3 HOH A 18 618 2 HOH HOH . E 3 HOH A 19 619 196 HOH HOH . E 3 HOH A 20 620 14 HOH HOH . E 3 HOH A 21 621 71 HOH HOH . E 3 HOH A 22 622 111 HOH HOH . E 3 HOH A 23 623 35 HOH HOH . E 3 HOH A 24 624 113 HOH HOH . E 3 HOH A 25 625 117 HOH HOH . E 3 HOH A 26 626 89 HOH HOH . E 3 HOH A 27 627 168 HOH HOH . E 3 HOH A 28 628 45 HOH HOH . E 3 HOH A 29 629 160 HOH HOH . E 3 HOH A 30 630 80 HOH HOH . E 3 HOH A 31 631 136 HOH HOH . E 3 HOH A 32 632 72 HOH HOH . E 3 HOH A 33 633 192 HOH HOH . E 3 HOH A 34 634 59 HOH HOH . E 3 HOH A 35 635 133 HOH HOH . E 3 HOH A 36 636 129 HOH HOH . E 3 HOH A 37 637 33 HOH HOH . E 3 HOH A 38 638 125 HOH HOH . E 3 HOH A 39 639 15 HOH HOH . E 3 HOH A 40 640 52 HOH HOH . E 3 HOH A 41 641 23 HOH HOH . E 3 HOH A 42 642 82 HOH HOH . E 3 HOH A 43 643 102 HOH HOH . E 3 HOH A 44 644 131 HOH HOH . E 3 HOH A 45 645 101 HOH HOH . E 3 HOH A 46 646 7 HOH HOH . E 3 HOH A 47 647 150 HOH HOH . E 3 HOH A 48 648 128 HOH HOH . E 3 HOH A 49 649 156 HOH HOH . E 3 HOH A 50 650 108 HOH HOH . E 3 HOH A 51 651 85 HOH HOH . E 3 HOH A 52 652 148 HOH HOH . E 3 HOH A 53 653 154 HOH HOH . E 3 HOH A 54 654 75 HOH HOH . E 3 HOH A 55 655 67 HOH HOH . E 3 HOH A 56 656 109 HOH HOH . E 3 HOH A 57 657 95 HOH HOH . E 3 HOH A 58 658 120 HOH HOH . E 3 HOH A 59 659 12 HOH HOH . E 3 HOH A 60 660 1 HOH HOH . E 3 HOH A 61 661 180 HOH HOH . E 3 HOH A 62 662 155 HOH HOH . E 3 HOH A 63 663 65 HOH HOH . E 3 HOH A 64 664 29 HOH HOH . E 3 HOH A 65 665 63 HOH HOH . E 3 HOH A 66 666 189 HOH HOH . E 3 HOH A 67 667 105 HOH HOH . E 3 HOH A 68 668 4 HOH HOH . E 3 HOH A 69 669 97 HOH HOH . E 3 HOH A 70 670 38 HOH HOH . E 3 HOH A 71 671 58 HOH HOH . E 3 HOH A 72 672 181 HOH HOH . E 3 HOH A 73 673 28 HOH HOH . E 3 HOH A 74 674 3 HOH HOH . E 3 HOH A 75 675 151 HOH HOH . E 3 HOH A 76 676 93 HOH HOH . E 3 HOH A 77 677 115 HOH HOH . E 3 HOH A 78 678 19 HOH HOH . E 3 HOH A 79 679 26 HOH HOH . E 3 HOH A 80 680 153 HOH HOH . E 3 HOH A 81 681 106 HOH HOH . E 3 HOH A 82 682 41 HOH HOH . E 3 HOH A 83 683 36 HOH HOH . E 3 HOH A 84 684 22 HOH HOH . E 3 HOH A 85 685 60 HOH HOH . E 3 HOH A 86 686 69 HOH HOH . E 3 HOH A 87 687 17 HOH HOH . E 3 HOH A 88 688 165 HOH HOH . E 3 HOH A 89 689 61 HOH HOH . E 3 HOH A 90 690 42 HOH HOH . E 3 HOH A 91 691 39 HOH HOH . E 3 HOH A 92 692 47 HOH HOH . E 3 HOH A 93 693 140 HOH HOH . E 3 HOH A 94 694 20 HOH HOH . E 3 HOH A 95 695 49 HOH HOH . E 3 HOH A 96 696 201 HOH HOH . E 3 HOH A 97 697 34 HOH HOH . E 3 HOH A 98 698 92 HOH HOH . E 3 HOH A 99 699 126 HOH HOH . E 3 HOH A 100 700 9 HOH HOH . E 3 HOH A 101 701 190 HOH HOH . E 3 HOH A 102 702 147 HOH HOH . E 3 HOH A 103 703 186 HOH HOH . E 3 HOH A 104 704 185 HOH HOH . E 3 HOH A 105 705 169 HOH HOH . E 3 HOH A 106 706 127 HOH HOH . E 3 HOH A 107 707 44 HOH HOH . E 3 HOH A 108 708 134 HOH HOH . E 3 HOH A 109 709 98 HOH HOH . E 3 HOH A 110 710 183 HOH HOH . E 3 HOH A 111 711 197 HOH HOH . E 3 HOH A 112 712 194 HOH HOH . E 3 HOH A 113 713 178 HOH HOH . E 3 HOH A 114 714 146 HOH HOH . E 3 HOH A 115 715 200 HOH HOH . E 3 HOH A 116 716 162 HOH HOH . E 3 HOH A 117 717 198 HOH HOH . E 3 HOH A 118 718 173 HOH HOH . E 3 HOH A 119 719 114 HOH HOH . E 3 HOH A 120 720 195 HOH HOH . E 3 HOH A 121 721 138 HOH HOH . E 3 HOH A 122 722 164 HOH HOH . E 3 HOH A 123 723 157 HOH HOH . F 3 HOH B 1 601 184 HOH HOH . F 3 HOH B 2 602 112 HOH HOH . F 3 HOH B 3 603 86 HOH HOH . F 3 HOH B 4 604 170 HOH HOH . F 3 HOH B 5 605 124 HOH HOH . F 3 HOH B 6 606 90 HOH HOH . F 3 HOH B 7 607 70 HOH HOH . F 3 HOH B 8 608 142 HOH HOH . F 3 HOH B 9 609 48 HOH HOH . F 3 HOH B 10 610 57 HOH HOH . F 3 HOH B 11 611 135 HOH HOH . F 3 HOH B 12 612 78 HOH HOH . F 3 HOH B 13 613 55 HOH HOH . F 3 HOH B 14 614 166 HOH HOH . F 3 HOH B 15 615 100 HOH HOH . F 3 HOH B 16 616 81 HOH HOH . F 3 HOH B 17 617 171 HOH HOH . F 3 HOH B 18 618 18 HOH HOH . F 3 HOH B 19 619 104 HOH HOH . F 3 HOH B 20 620 152 HOH HOH . F 3 HOH B 21 621 83 HOH HOH . F 3 HOH B 22 622 24 HOH HOH . F 3 HOH B 23 623 73 HOH HOH . F 3 HOH B 24 624 159 HOH HOH . F 3 HOH B 25 625 56 HOH HOH . F 3 HOH B 26 626 54 HOH HOH . F 3 HOH B 27 627 37 HOH HOH . F 3 HOH B 28 628 176 HOH HOH . F 3 HOH B 29 629 74 HOH HOH . F 3 HOH B 30 630 6 HOH HOH . F 3 HOH B 31 631 84 HOH HOH . F 3 HOH B 32 632 51 HOH HOH . F 3 HOH B 33 633 143 HOH HOH . F 3 HOH B 34 634 43 HOH HOH . F 3 HOH B 35 635 10 HOH HOH . F 3 HOH B 36 636 145 HOH HOH . F 3 HOH B 37 637 27 HOH HOH . F 3 HOH B 38 638 121 HOH HOH . F 3 HOH B 39 639 188 HOH HOH . F 3 HOH B 40 640 8 HOH HOH . F 3 HOH B 41 641 21 HOH HOH . F 3 HOH B 42 642 87 HOH HOH . F 3 HOH B 43 643 177 HOH HOH . F 3 HOH B 44 644 182 HOH HOH . F 3 HOH B 45 645 96 HOH HOH . F 3 HOH B 46 646 64 HOH HOH . F 3 HOH B 47 647 122 HOH HOH . F 3 HOH B 48 648 167 HOH HOH . F 3 HOH B 49 649 91 HOH HOH . F 3 HOH B 50 650 123 HOH HOH . F 3 HOH B 51 651 161 HOH HOH . F 3 HOH B 52 652 5 HOH HOH . F 3 HOH B 53 653 11 HOH HOH . F 3 HOH B 54 654 79 HOH HOH . F 3 HOH B 55 655 13 HOH HOH . F 3 HOH B 56 656 40 HOH HOH . F 3 HOH B 57 657 158 HOH HOH . F 3 HOH B 58 658 172 HOH HOH . F 3 HOH B 59 659 32 HOH HOH . F 3 HOH B 60 660 141 HOH HOH . F 3 HOH B 61 661 46 HOH HOH . F 3 HOH B 62 662 30 HOH HOH . F 3 HOH B 63 663 31 HOH HOH . F 3 HOH B 64 664 53 HOH HOH . F 3 HOH B 65 665 119 HOH HOH . F 3 HOH B 66 666 107 HOH HOH . F 3 HOH B 67 667 16 HOH HOH . F 3 HOH B 68 668 179 HOH HOH . F 3 HOH B 69 669 25 HOH HOH . F 3 HOH B 70 670 139 HOH HOH . F 3 HOH B 71 671 187 HOH HOH . F 3 HOH B 72 672 199 HOH HOH . F 3 HOH B 73 673 50 HOH HOH . F 3 HOH B 74 674 193 HOH HOH . F 3 HOH B 75 675 149 HOH HOH . F 3 HOH B 76 676 130 HOH HOH . F 3 HOH B 77 677 174 HOH HOH . F 3 HOH B 78 678 191 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 4V3 . . . C 2 11.769 -9.348 31.474 1 38.59 ? C10 4V3 500 A 1 HETATM 2 C C13 4V3 . . . C 2 5.998 -11.783 33.977 1 45.34 ? C13 4V3 500 A 1 HETATM 3 C C01 4V3 . . . C 2 9.527 -11.664 33.622 1 38.38 ? C01 4V3 500 A 1 HETATM 4 C C02 4V3 . . . C 2 8.216 -10.933 33.314 1 36.09 ? C02 4V3 500 A 1 HETATM 5 C C03 4V3 . . . C 2 8.52 -9.42 33.294 1 38.23 ? C03 4V3 500 A 1 HETATM 6 O O04 4V3 . . . C 2 9.418 -9.183 32.211 1 38.4 ? O04 4V3 500 A 1 HETATM 7 C C05 4V3 . . . C 2 10.727 -9.781 32.525 1 36.64 ? C05 4V3 500 A 1 HETATM 8 C C06 4V3 . . . C 2 10.578 -11.299 32.592 1 38.85 ? C06 4V3 500 A 1 HETATM 9 N N07 4V3 . . . C 2 7.226 -11.322 34.32 1 38.37 ? N07 4V3 500 A 1 HETATM 10 O O08 4V3 . . . C 2 11.857 -11.851 32.946 1 35.54 ? O08 4V3 500 A 1 HETATM 11 O O09 4V3 . . . C 2 9.263 -13.097 33.605 1 36.36 ? O09 4V3 500 A 1 HETATM 12 O O11 4V3 . . . C 2 7.428 -8.697 33.118 1 44.43 ? O11 4V3 500 A 1 HETATM 13 O O12 4V3 . . . C 2 11.302 -9.683 30.165 1 43.85 ? O12 4V3 500 A 1 HETATM 14 O O14 4V3 . . . C 2 5.225 -12.043 35.063 1 46.03 ? O14 4V3 500 A 1 HETATM 15 O O15 4V3 . . . C 2 5.554 -11.754 32.834 1 45.43 ? O15 4V3 500 A 1 HETATM 16 C C16 4V3 . . . C 2 3.898 -12.415 34.769 1 47.39 ? C16 4V3 500 A 1 HETATM 17 C C17 4V3 . . . C 2 3.03 -11.207 34.326 1 49.5 ? C17 4V3 500 A 1 HETATM 18 C C18 4V3 . . . C 2 3.132 -9.931 34.689 1 51.72 ? C18 4V3 500 A 1 HETATM 19 C C19 4V3 . . . C 2 2.097 -9.08 34.12 1 50.78 ? C19 4V3 500 A 1 HETATM 20 C C20 4V3 . . . C 2 1.093 -9.813 33.484 1 52.51 ? C20 4V3 500 A 1 HETATM 21 S S21 4V3 . . . C 2 1.459 -11.528 33.575 1 49.22 ? S21 4V3 500 A 1 HETATM 22 C C22 4V3 . . . C 2 1.993 -7.68 34.162 1 54.01 ? C22 4V3 500 A 1 HETATM 23 C C23 4V3 . . . C 2 0.93 -7.023 33.565 1 50.03 ? C23 4V3 500 A 1 HETATM 24 C C24 4V3 . . . C 2 -0.081 -7.773 32.901 1 50.74 ? C24 4V3 500 A 1 HETATM 25 C C25 4V3 . . . C 2 0.011 -9.157 32.868 1 52.94 ? C25 4V3 500 A 1 HETATM 26 O O26 4V3 . . . C 2 1.652 -12.129 32.275 1 55.68 ? O26 4V3 500 A 1 HETATM 27 O O27 4V3 . . . C 2 0.598 -12.244 34.495 1 49.34 ? O27 4V3 500 A 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 352 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 27 #