data_5BRM # _model_server_result.job_id 2na_VDU2pLJKoiJKC-DxrQ _model_server_result.datetime_utc '2024-11-05 04:00:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5brm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":301}' # _entry.id 5BRM # _exptl.entry_id 5BRM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5BRM _cell.length_a 142.188 _cell.length_b 142.188 _cell.length_c 135.981 _cell.Z_PDB 54 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5BRM _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentadecameric _pdbx_struct_assembly.oligomeric_count 15 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 P N N ? 3 Q N N ? 3 R N N ? 3 S N N ? 3 T N N ? 3 U N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 G C GLY 7 G GLY 377 1_555 G N TPO 8 G TPO 378 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 G C TPO 8 G TPO 378 1_555 G N MET 9 G MET 379 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.357 ? covale ? covale3 H C GLY 7 H GLY 377 1_555 H N TPO 8 H TPO 378 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale4 H C TPO 8 H TPO 378 1_555 H N MET 9 H MET 379 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? covale ? covale5 I C TPO 8 I TPO 378 1_555 I N MET 9 I MET 379 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.353 ? covale ? covale6 J C TPO 8 J TPO 378 1_555 J N MET 9 J MET 379 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale7 K C TPO 8 K TPO 378 1_555 K N MET 9 K MET 379 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.356 ? covale ? covale8 L C TPO 8 L TPO 378 1_555 L N MET 9 L MET 379 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? metalc ? metalc1 A SG CYS 40 A CYS 79 1_555 P ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? metalc ? metalc2 A SG CYS 45 A CYS 84 1_555 P ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc3 A NE2 HIS 122 A HIS 161 1_555 P ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.894 ? metalc ? metalc4 A NE2 HIS 127 A HIS 166 1_555 P ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? metalc ? metalc5 B SG CYS 40 B CYS 79 1_555 Q ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc6 B SG CYS 45 B CYS 84 1_555 Q ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc7 B NE2 HIS 122 B HIS 161 1_555 Q ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? metalc ? metalc8 B NE2 HIS 127 B HIS 166 1_555 Q ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.937 ? metalc ? metalc9 C SG CYS 40 C CYS 79 1_555 R ZN ZN . C ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc10 C SG CYS 45 C CYS 84 1_555 R ZN ZN . C ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc11 C NE2 HIS 122 C HIS 161 1_555 R ZN ZN . C ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? metalc ? metalc12 C NE2 HIS 127 C HIS 166 1_555 R ZN ZN . C ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.897 ? metalc ? metalc13 D SG CYS 40 D CYS 79 1_555 S ZN ZN . D ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? metalc ? metalc14 D SG CYS 45 D CYS 84 1_555 S ZN ZN . D ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? metalc ? metalc15 D NE2 HIS 122 D HIS 161 1_555 S ZN ZN . D ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc16 D NE2 HIS 127 D HIS 166 1_555 S ZN ZN . D ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? metalc ? metalc17 E SG CYS 40 E CYS 79 1_555 T ZN ZN . E ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc18 E SG CYS 45 E CYS 84 1_555 T ZN ZN . E ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc19 E NE2 HIS 122 E HIS 161 1_555 T ZN ZN . E ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc20 E NE2 HIS 127 E HIS 166 1_555 T ZN ZN . E ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.931 ? metalc ? metalc21 F SG CYS 40 F CYS 79 1_555 U ZN ZN . F ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? metalc ? metalc22 F SG CYS 45 F CYS 84 1_555 U ZN ZN . F ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc23 F NE2 HIS 122 F HIS 161 1_555 U ZN ZN . F ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? metalc ? metalc24 F NE2 HIS 127 F HIS 166 1_555 U ZN ZN . F ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.913 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5BRM _atom_sites.fract_transf_matrix[1][1] 0.007033 _atom_sites.fract_transf_matrix[1][2] 0.00406 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008121 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007354 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code P 3 ZN A 1 301 301 ZN ZN . Q 3 ZN B 1 301 301 ZN ZN . R 3 ZN C 1 301 301 ZN ZN . S 3 ZN D 1 301 301 ZN ZN . T 3 ZN E 1 301 301 ZN ZN . U 3 ZN F 1 301 301 ZN ZN . V 4 HOH A 1 401 19 HOH HOH . W 4 HOH B 1 401 12 HOH HOH . X 4 HOH C 1 401 41 HOH HOH . Y 4 HOH F 1 401 37 HOH HOH . Y 4 HOH F 2 402 13 HOH HOH . Y 4 HOH F 3 403 34 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id Q _atom_site.label_entity_id 3 _atom_site.Cartn_x 59.116 _atom_site.Cartn_y -27.678 _atom_site.Cartn_z 8.135 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 14.83 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 301 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 215 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #