data_5BRO # _model_server_result.job_id c-mNnmP9BEWr6yAWICmvdg _model_server_result.datetime_utc '2025-01-11 19:41:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5bro # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":602}' # _entry.id 5BRO # _exptl.entry_id 5BRO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 46.025 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FORMIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5BRO _cell.length_a 126.47 _cell.length_b 126.47 _cell.length_c 88.31 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5BRO _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_554 y,x,-z-1 0 1 0 1 0 0 0 0 -1 0 0 -88.31 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 561 NAG 2 n B NAG 2 B 2 NAG A 562 NAG 2 n C NAG 1 C 1 NAG A 563 NAG 2 n C NAG 2 C 2 NAG A 564 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 49 A CYS 91 1_555 A SG CYS 95 A CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? disulf ? disulf2 A SG CYS 267 A CYS 309 1_555 A SG CYS 318 A CYS 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf3 A SG CYS 492 A CYS 534 1_555 A SG CYS 509 A CYS 551 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? covale ? covale1 A ND2 ASN 100 A ASN 142 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.466 ? covale ? covale2 A ND2 ASN 148 A ASN 190 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale3 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? covale ? covale4 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.464 ? # _chem_comp.formula 'C H2 O2' _chem_comp.formula_weight 46.025 _chem_comp.id FMT _chem_comp.mon_nstd_flag . _chem_comp.name 'FORMIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O1 FMT doub 83 n n C O2 FMT sing 84 n n C H FMT sing 85 n n O2 HO2 FMT sing 86 n n # _atom_sites.entry_id 5BRO _atom_sites.fract_transf_matrix[1][1] 0.007907 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007907 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011324 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 GOL A 1 601 558 GOL GOL . E 4 FMT A 1 602 560 FMT FMT . F 5 HOH A 1 701 109 HOH HOH . F 5 HOH A 2 702 78 HOH HOH . F 5 HOH A 3 703 69 HOH HOH . F 5 HOH A 4 704 51 HOH HOH . F 5 HOH A 5 705 38 HOH HOH . F 5 HOH A 6 706 49 HOH HOH . F 5 HOH A 7 707 143 HOH HOH . F 5 HOH A 8 708 87 HOH HOH . F 5 HOH A 9 709 104 HOH HOH . F 5 HOH A 10 710 72 HOH HOH . F 5 HOH A 11 711 131 HOH HOH . F 5 HOH A 12 712 10 HOH HOH . F 5 HOH A 13 713 2 HOH HOH . F 5 HOH A 14 714 140 HOH HOH . F 5 HOH A 15 715 18 HOH HOH . F 5 HOH A 16 716 94 HOH HOH . F 5 HOH A 17 717 136 HOH HOH . F 5 HOH A 18 718 53 HOH HOH . F 5 HOH A 19 719 111 HOH HOH . F 5 HOH A 20 720 134 HOH HOH . F 5 HOH A 21 721 4 HOH HOH . F 5 HOH A 22 722 65 HOH HOH . F 5 HOH A 23 723 6 HOH HOH . F 5 HOH A 24 724 129 HOH HOH . F 5 HOH A 25 725 16 HOH HOH . F 5 HOH A 26 726 135 HOH HOH . F 5 HOH A 27 727 85 HOH HOH . F 5 HOH A 28 728 66 HOH HOH . F 5 HOH A 29 729 22 HOH HOH . F 5 HOH A 30 730 36 HOH HOH . F 5 HOH A 31 731 116 HOH HOH . F 5 HOH A 32 732 98 HOH HOH . F 5 HOH A 33 733 125 HOH HOH . F 5 HOH A 34 734 11 HOH HOH . F 5 HOH A 35 735 13 HOH HOH . F 5 HOH A 36 736 128 HOH HOH . F 5 HOH A 37 737 1 HOH HOH . F 5 HOH A 38 738 39 HOH HOH . F 5 HOH A 39 739 95 HOH HOH . F 5 HOH A 40 740 33 HOH HOH . F 5 HOH A 41 741 20 HOH HOH . F 5 HOH A 42 742 68 HOH HOH . F 5 HOH A 43 743 44 HOH HOH . F 5 HOH A 44 744 63 HOH HOH . F 5 HOH A 45 745 133 HOH HOH . F 5 HOH A 46 746 88 HOH HOH . F 5 HOH A 47 747 102 HOH HOH . F 5 HOH A 48 748 103 HOH HOH . F 5 HOH A 49 749 56 HOH HOH . F 5 HOH A 50 750 132 HOH HOH . F 5 HOH A 51 751 101 HOH HOH . F 5 HOH A 52 752 67 HOH HOH . F 5 HOH A 53 753 23 HOH HOH . F 5 HOH A 54 754 3 HOH HOH . F 5 HOH A 55 755 54 HOH HOH . F 5 HOH A 56 756 52 HOH HOH . F 5 HOH A 57 757 40 HOH HOH . F 5 HOH A 58 758 7 HOH HOH . F 5 HOH A 59 759 61 HOH HOH . F 5 HOH A 60 760 25 HOH HOH . F 5 HOH A 61 761 35 HOH HOH . F 5 HOH A 62 762 24 HOH HOH . F 5 HOH A 63 763 146 HOH HOH . F 5 HOH A 64 764 122 HOH HOH . F 5 HOH A 65 765 117 HOH HOH . F 5 HOH A 66 766 27 HOH HOH . F 5 HOH A 67 767 5 HOH HOH . F 5 HOH A 68 768 115 HOH HOH . F 5 HOH A 69 769 83 HOH HOH . F 5 HOH A 70 770 113 HOH HOH . F 5 HOH A 71 771 29 HOH HOH . F 5 HOH A 72 772 14 HOH HOH . F 5 HOH A 73 773 92 HOH HOH . F 5 HOH A 74 774 37 HOH HOH . F 5 HOH A 75 775 41 HOH HOH . F 5 HOH A 76 776 32 HOH HOH . F 5 HOH A 77 777 60 HOH HOH . F 5 HOH A 78 778 77 HOH HOH . F 5 HOH A 79 779 42 HOH HOH . F 5 HOH A 80 780 59 HOH HOH . F 5 HOH A 81 781 43 HOH HOH . F 5 HOH A 82 782 119 HOH HOH . F 5 HOH A 83 783 62 HOH HOH . F 5 HOH A 84 784 108 HOH HOH . F 5 HOH A 85 785 17 HOH HOH . F 5 HOH A 86 786 112 HOH HOH . F 5 HOH A 87 787 130 HOH HOH . F 5 HOH A 88 788 58 HOH HOH . F 5 HOH A 89 789 107 HOH HOH . F 5 HOH A 90 790 79 HOH HOH . F 5 HOH A 91 791 118 HOH HOH . F 5 HOH A 92 792 123 HOH HOH . F 5 HOH A 93 793 145 HOH HOH . F 5 HOH A 94 794 12 HOH HOH . F 5 HOH A 95 795 144 HOH HOH . F 5 HOH A 96 796 89 HOH HOH . F 5 HOH A 97 797 28 HOH HOH . F 5 HOH A 98 798 93 HOH HOH . F 5 HOH A 99 799 15 HOH HOH . F 5 HOH A 100 800 81 HOH HOH . F 5 HOH A 101 801 96 HOH HOH . F 5 HOH A 102 802 75 HOH HOH . F 5 HOH A 103 803 19 HOH HOH . F 5 HOH A 104 804 30 HOH HOH . F 5 HOH A 105 805 50 HOH HOH . F 5 HOH A 106 806 55 HOH HOH . F 5 HOH A 107 807 8 HOH HOH . F 5 HOH A 108 808 31 HOH HOH . F 5 HOH A 109 809 45 HOH HOH . F 5 HOH A 110 810 26 HOH HOH . F 5 HOH A 111 811 71 HOH HOH . F 5 HOH A 112 812 21 HOH HOH . F 5 HOH A 113 813 70 HOH HOH . F 5 HOH A 114 814 148 HOH HOH . F 5 HOH A 115 815 46 HOH HOH . F 5 HOH A 116 816 105 HOH HOH . F 5 HOH A 117 817 76 HOH HOH . F 5 HOH A 118 818 138 HOH HOH . F 5 HOH A 119 819 97 HOH HOH . F 5 HOH A 120 820 147 HOH HOH . F 5 HOH A 121 821 74 HOH HOH . F 5 HOH A 122 822 80 HOH HOH . F 5 HOH A 123 823 47 HOH HOH . F 5 HOH A 124 824 82 HOH HOH . F 5 HOH A 125 825 106 HOH HOH . F 5 HOH A 126 826 48 HOH HOH . F 5 HOH A 127 827 121 HOH HOH . F 5 HOH A 128 828 86 HOH HOH . F 5 HOH A 129 829 149 HOH HOH . F 5 HOH A 130 830 84 HOH HOH . F 5 HOH A 131 831 137 HOH HOH . F 5 HOH A 132 832 9 HOH HOH . F 5 HOH A 133 833 150 HOH HOH . F 5 HOH A 134 834 124 HOH HOH . F 5 HOH A 135 835 90 HOH HOH . F 5 HOH A 136 836 57 HOH HOH . F 5 HOH A 137 837 110 HOH HOH . F 5 HOH A 138 838 64 HOH HOH . F 5 HOH A 139 839 120 HOH HOH . F 5 HOH A 140 840 126 HOH HOH . F 5 HOH A 141 841 139 HOH HOH . F 5 HOH A 142 842 142 HOH HOH . F 5 HOH A 143 843 141 HOH HOH . F 5 HOH A 144 844 114 HOH HOH . F 5 HOH A 145 845 127 HOH HOH . F 5 HOH A 146 846 100 HOH HOH . F 5 HOH A 147 847 34 HOH HOH . F 5 HOH A 148 848 91 HOH HOH . F 5 HOH A 149 849 73 HOH HOH . F 5 HOH A 150 850 99 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C FMT . . . E 4 -15.209 16.264 -56.315 1 48.05 ? C FMT 602 A 1 HETATM 2 O O1 FMT . . . E 4 -15.548 15.332 -57.035 1 43.74 ? O1 FMT 602 A 1 HETATM 3 O O2 FMT . . . E 4 -15.024 16.064 -55.012 1 50.25 ? O2 FMT 602 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 3 #