data_5BRR # _model_server_result.job_id rK9ugmEPIwrE_FctbyWCLQ _model_server_result.datetime_utc '2024-11-22 04:45:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5brr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 5BRR # _exptl.entry_id 5BRR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5BRR _cell.length_a 49.74 _cell.length_b 73.94 _cell.length_c 201.8 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5BRR _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 32 E CYS 42 1_555 B SG CYS 48 E CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? disulf ? disulf2 B SG CYS 134 E CYS 136 1_555 B SG CYS 209 E CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? disulf ? disulf3 B SG CYS 166 E CYS 168 1_555 B SG CYS 182 E CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? disulf ? disulf4 B SG CYS 199 E CYS 191 1_555 B SG CYS 227 E CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.931 ? covale ? covale1 A CG ARG 115 I ARG 115 1_555 A CE2 PHE 302 I PHE 302 4_455 ? ? ? ? ? ? ? ? ? ? ? ? 1.262 ? covale ? covale2 A CD ARG 115 I ARG 115 1_555 A CE2 PHE 302 I PHE 302 4_455 ? ? ? ? ? ? ? ? ? ? ? ? 1.241 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 5BRR _atom_sites.fract_transf_matrix[1][1] 0.020105 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013524 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004955 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL E 1 301 4 GOL GOL . D 3 GOL E 1 302 5 GOL GOL . E 3 GOL E 1 303 6 GOL GOL . F 3 GOL E 1 304 7 GOL GOL . G 4 PGE E 1 305 5115 PGE PG6 . H 5 HOH I 1 401 13 HOH HOH . H 5 HOH I 2 402 30 HOH HOH . H 5 HOH I 3 403 16 HOH HOH . H 5 HOH I 4 404 20 HOH HOH . H 5 HOH I 5 405 31 HOH HOH . H 5 HOH I 6 406 9 HOH HOH . H 5 HOH I 7 407 29 HOH HOH . H 5 HOH I 8 408 36 HOH HOH . H 5 HOH I 9 409 11 HOH HOH . H 5 HOH I 10 410 4 HOH HOH . H 5 HOH I 11 411 26 HOH HOH . H 5 HOH I 12 412 10 HOH HOH . H 5 HOH I 13 413 34 HOH HOH . H 5 HOH I 14 414 28 HOH HOH . H 5 HOH I 15 415 32 HOH HOH . H 5 HOH I 16 416 35 HOH HOH . H 5 HOH I 17 417 3 HOH HOH . I 5 HOH E 1 401 8 HOH HOH . I 5 HOH E 2 402 21 HOH HOH . I 5 HOH E 3 403 15 HOH HOH . I 5 HOH E 4 404 12 HOH HOH . I 5 HOH E 5 405 22 HOH HOH . I 5 HOH E 6 406 17 HOH HOH . I 5 HOH E 7 407 23 HOH HOH . I 5 HOH E 8 408 24 HOH HOH . I 5 HOH E 9 409 5 HOH HOH . I 5 HOH E 10 410 1 HOH HOH . I 5 HOH E 11 411 27 HOH HOH . I 5 HOH E 12 412 14 HOH HOH . I 5 HOH E 13 413 7 HOH HOH . I 5 HOH E 14 414 18 HOH HOH . I 5 HOH E 15 415 6 HOH HOH . I 5 HOH E 16 416 33 HOH HOH . I 5 HOH E 17 417 25 HOH HOH . I 5 HOH E 18 418 19 HOH HOH . I 5 HOH E 19 419 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 3 -14.025 -19.538 -62.791 1 44.99 ? C1 GOL 302 E 1 HETATM 2 O O1 GOL . . . D 3 -15.262 -20.207 -62.561 1 46.9 ? O1 GOL 302 E 1 HETATM 3 C C2 GOL . . . D 3 -13.714 -19.499 -64.284 1 45.69 ? C2 GOL 302 E 1 HETATM 4 O O2 GOL . . . D 3 -13.702 -18.13 -64.748 1 42.8 ? O2 GOL 302 E 1 HETATM 5 C C3 GOL . . . D 3 -12.364 -20.19 -64.49 1 46.87 ? C3 GOL 302 E 1 HETATM 6 O O3 GOL . . . D 3 -12.402 -21.565 -64.07 1 50.68 ? O3 GOL 302 E 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #