data_5BSZ # _model_server_result.job_id rj-kgfCIvEeWeRLfrSejTw _model_server_result.datetime_utc '2024-11-22 17:59:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5bsz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 5BSZ # _exptl.entry_id 5BSZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5BSZ _cell.length_a 63.254 _cell.length_b 81.004 _cell.length_c 126.916 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5BSZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 270 n n N HN1 SAH sing 271 n n N HN2 SAH sing 272 n n CA CB SAH sing 273 n n CA C SAH sing 274 n n CA HA SAH sing 275 n n CB CG SAH sing 276 n n CB HB1 SAH sing 277 n n CB HB2 SAH sing 278 n n CG SD SAH sing 279 n n CG HG1 SAH sing 280 n n CG HG2 SAH sing 281 n n SD C5' SAH sing 282 n n C O SAH doub 283 n n C OXT SAH sing 284 n n OXT HXT SAH sing 285 n n C5' C4' SAH sing 286 n n C5' "H5'1" SAH sing 287 n n C5' "H5'2" SAH sing 288 n n C4' O4' SAH sing 289 n n C4' C3' SAH sing 290 n n C4' H4' SAH sing 291 n n O4' C1' SAH sing 292 n n C3' O3' SAH sing 293 n n C3' C2' SAH sing 294 n n C3' H3' SAH sing 295 n n O3' HO3' SAH sing 296 n n C2' O2' SAH sing 297 n n C2' C1' SAH sing 298 n n C2' H2' SAH sing 299 n n O2' HO2' SAH sing 300 n n C1' N9 SAH sing 301 n n C1' H1' SAH sing 302 n n N9 C8 SAH sing 303 n y N9 C4 SAH sing 304 n y C8 N7 SAH doub 305 n y C8 H8 SAH sing 306 n n N7 C5 SAH sing 307 n y C5 C6 SAH sing 308 n y C5 C4 SAH doub 309 n y C6 N6 SAH sing 310 n n C6 N1 SAH doub 311 n y N6 HN61 SAH sing 312 n n N6 HN62 SAH sing 313 n n N1 C2 SAH sing 314 n y C2 N3 SAH doub 315 n y C2 H2 SAH sing 316 n n N3 C4 SAH sing 317 n y # _atom_sites.entry_id 5BSZ _atom_sites.fract_transf_matrix[1][1] 0.015809 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012345 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007879 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SAH A 1 301 1 SAH SAH . C 3 EDO A 1 302 1 EDO EDO . D 3 EDO A 1 303 2 EDO EDO . E 3 EDO A 1 304 3 EDO EDO . F 3 EDO A 1 305 1 EDO EDO . G 4 THM A 1 306 1 THM THM . H 5 HOH A 1 401 217 HOH HOH . H 5 HOH A 2 402 200 HOH HOH . H 5 HOH A 3 403 204 HOH HOH . H 5 HOH A 4 404 64 HOH HOH . H 5 HOH A 5 405 111 HOH HOH . H 5 HOH A 6 406 85 HOH HOH . H 5 HOH A 7 407 104 HOH HOH . H 5 HOH A 8 408 235 HOH HOH . H 5 HOH A 9 409 132 HOH HOH . H 5 HOH A 10 410 59 HOH HOH . H 5 HOH A 11 411 38 HOH HOH . H 5 HOH A 12 412 196 HOH HOH . H 5 HOH A 13 413 135 HOH HOH . H 5 HOH A 14 414 213 HOH HOH . H 5 HOH A 15 415 97 HOH HOH . H 5 HOH A 16 416 11 HOH HOH . H 5 HOH A 17 417 16 HOH HOH . H 5 HOH A 18 418 220 HOH HOH . H 5 HOH A 19 419 5 HOH HOH . H 5 HOH A 20 420 6 HOH HOH . H 5 HOH A 21 421 137 HOH HOH . H 5 HOH A 22 422 161 HOH HOH . H 5 HOH A 23 423 25 HOH HOH . H 5 HOH A 24 424 8 HOH HOH . H 5 HOH A 25 425 46 HOH HOH . H 5 HOH A 26 426 3 HOH HOH . H 5 HOH A 27 427 31 HOH HOH . H 5 HOH A 28 428 22 HOH HOH . H 5 HOH A 29 429 114 HOH HOH . H 5 HOH A 30 430 138 HOH HOH . H 5 HOH A 31 431 103 HOH HOH . H 5 HOH A 32 432 42 HOH HOH . H 5 HOH A 33 433 210 HOH HOH . H 5 HOH A 34 434 47 HOH HOH . H 5 HOH A 35 435 61 HOH HOH . H 5 HOH A 36 436 142 HOH HOH . H 5 HOH A 37 437 108 HOH HOH . H 5 HOH A 38 438 78 HOH HOH . H 5 HOH A 39 439 216 HOH HOH . H 5 HOH A 40 440 75 HOH HOH . H 5 HOH A 41 441 125 HOH HOH . H 5 HOH A 42 442 26 HOH HOH . H 5 HOH A 43 443 57 HOH HOH . H 5 HOH A 44 444 84 HOH HOH . H 5 HOH A 45 445 50 HOH HOH . H 5 HOH A 46 446 199 HOH HOH . H 5 HOH A 47 447 20 HOH HOH . H 5 HOH A 48 448 9 HOH HOH . H 5 HOH A 49 449 33 HOH HOH . H 5 HOH A 50 450 58 HOH HOH . H 5 HOH A 51 451 1 HOH HOH . H 5 HOH A 52 452 239 HOH HOH . H 5 HOH A 53 453 209 HOH HOH . H 5 HOH A 54 454 2 HOH HOH . H 5 HOH A 55 455 65 HOH HOH . H 5 HOH A 56 456 12 HOH HOH . H 5 HOH A 57 457 90 HOH HOH . H 5 HOH A 58 458 237 HOH HOH . H 5 HOH A 59 459 105 HOH HOH . H 5 HOH A 60 460 93 HOH HOH . H 5 HOH A 61 461 91 HOH HOH . H 5 HOH A 62 462 60 HOH HOH . H 5 HOH A 63 463 146 HOH HOH . H 5 HOH A 64 464 41 HOH HOH . H 5 HOH A 65 465 71 HOH HOH . H 5 HOH A 66 466 27 HOH HOH . H 5 HOH A 67 467 177 HOH HOH . H 5 HOH A 68 468 68 HOH HOH . H 5 HOH A 69 469 43 HOH HOH . H 5 HOH A 70 470 73 HOH HOH . H 5 HOH A 71 471 24 HOH HOH . H 5 HOH A 72 472 66 HOH HOH . H 5 HOH A 73 473 190 HOH HOH . H 5 HOH A 74 474 69 HOH HOH . H 5 HOH A 75 475 198 HOH HOH . H 5 HOH A 76 476 34 HOH HOH . H 5 HOH A 77 477 242 HOH HOH . H 5 HOH A 78 478 29 HOH HOH . H 5 HOH A 79 479 106 HOH HOH . H 5 HOH A 80 480 228 HOH HOH . H 5 HOH A 81 481 133 HOH HOH . H 5 HOH A 82 482 147 HOH HOH . H 5 HOH A 83 483 225 HOH HOH . H 5 HOH A 84 484 70 HOH HOH . H 5 HOH A 85 485 159 HOH HOH . H 5 HOH A 86 486 51 HOH HOH . H 5 HOH A 87 487 44 HOH HOH . H 5 HOH A 88 488 100 HOH HOH . H 5 HOH A 89 489 173 HOH HOH . H 5 HOH A 90 490 74 HOH HOH . H 5 HOH A 91 491 243 HOH HOH . H 5 HOH A 92 492 110 HOH HOH . H 5 HOH A 93 493 101 HOH HOH . H 5 HOH A 94 494 52 HOH HOH . H 5 HOH A 95 495 53 HOH HOH . H 5 HOH A 96 496 36 HOH HOH . H 5 HOH A 97 497 82 HOH HOH . H 5 HOH A 98 498 23 HOH HOH . H 5 HOH A 99 499 152 HOH HOH . H 5 HOH A 100 500 56 HOH HOH . H 5 HOH A 101 501 80 HOH HOH . H 5 HOH A 102 502 94 HOH HOH . H 5 HOH A 103 503 77 HOH HOH . H 5 HOH A 104 504 32 HOH HOH . H 5 HOH A 105 505 87 HOH HOH . H 5 HOH A 106 506 120 HOH HOH . H 5 HOH A 107 507 21 HOH HOH . H 5 HOH A 108 508 30 HOH HOH . H 5 HOH A 109 509 39 HOH HOH . H 5 HOH A 110 510 107 HOH HOH . H 5 HOH A 111 511 185 HOH HOH . H 5 HOH A 112 512 221 HOH HOH . H 5 HOH A 113 513 10 HOH HOH . H 5 HOH A 114 514 37 HOH HOH . H 5 HOH A 115 515 72 HOH HOH . H 5 HOH A 116 516 19 HOH HOH . H 5 HOH A 117 517 113 HOH HOH . H 5 HOH A 118 518 7 HOH HOH . H 5 HOH A 119 519 218 HOH HOH . H 5 HOH A 120 520 55 HOH HOH . H 5 HOH A 121 521 13 HOH HOH . H 5 HOH A 122 522 28 HOH HOH . H 5 HOH A 123 523 35 HOH HOH . H 5 HOH A 124 524 231 HOH HOH . H 5 HOH A 125 525 168 HOH HOH . H 5 HOH A 126 526 226 HOH HOH . H 5 HOH A 127 527 136 HOH HOH . H 5 HOH A 128 528 48 HOH HOH . H 5 HOH A 129 529 246 HOH HOH . H 5 HOH A 130 530 232 HOH HOH . H 5 HOH A 131 531 127 HOH HOH . H 5 HOH A 132 532 17 HOH HOH . H 5 HOH A 133 533 45 HOH HOH . H 5 HOH A 134 534 54 HOH HOH . H 5 HOH A 135 535 98 HOH HOH . H 5 HOH A 136 536 40 HOH HOH . H 5 HOH A 137 537 49 HOH HOH . H 5 HOH A 138 538 79 HOH HOH . H 5 HOH A 139 539 67 HOH HOH . H 5 HOH A 140 540 240 HOH HOH . H 5 HOH A 141 541 81 HOH HOH . H 5 HOH A 142 542 112 HOH HOH . H 5 HOH A 143 543 201 HOH HOH . H 5 HOH A 144 544 89 HOH HOH . H 5 HOH A 145 545 102 HOH HOH . H 5 HOH A 146 546 131 HOH HOH . H 5 HOH A 147 547 116 HOH HOH . H 5 HOH A 148 548 92 HOH HOH . H 5 HOH A 149 549 163 HOH HOH . H 5 HOH A 150 550 187 HOH HOH . H 5 HOH A 151 551 182 HOH HOH . H 5 HOH A 152 552 134 HOH HOH . H 5 HOH A 153 553 234 HOH HOH . H 5 HOH A 154 554 99 HOH HOH . H 5 HOH A 155 555 145 HOH HOH . H 5 HOH A 156 556 193 HOH HOH . H 5 HOH A 157 557 233 HOH HOH . H 5 HOH A 158 558 158 HOH HOH . H 5 HOH A 159 559 186 HOH HOH . H 5 HOH A 160 560 95 HOH HOH . H 5 HOH A 161 561 219 HOH HOH . H 5 HOH A 162 562 144 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . B 2 -15.973 -12.411 -22.259 1 24.51 ? N SAH 301 A 1 HETATM 2 C CA SAH . . . B 2 -15.94 -12.518 -20.752 1 24.52 ? CA SAH 301 A 1 HETATM 3 C CB SAH . . . B 2 -14.612 -12.063 -20.109 1 21.33 ? CB SAH 301 A 1 HETATM 4 C CG SAH . . . B 2 -14.479 -10.735 -19.404 1 24.6 ? CG SAH 301 A 1 HETATM 5 S SD SAH . . . B 2 -12.933 -10.323 -18.669 1 19.83 ? SD SAH 301 A 1 HETATM 6 C C SAH . . . B 2 -17.199 -11.846 -20.291 1 25.41 ? C SAH 301 A 1 HETATM 7 O O SAH . . . B 2 -17.935 -11.188 -21.015 1 20.61 ? O SAH 301 A 1 HETATM 8 O OXT SAH . . . B 2 -17.596 -12.08 -19.19 1 24.4 ? OXT SAH 301 A 1 HETATM 9 C C5' SAH . . . B 2 -11.744 -10.333 -19.984 1 20.97 ? C5' SAH 301 A 1 HETATM 10 C C4' SAH . . . B 2 -11.102 -11.73 -20.089 1 21.28 ? C4' SAH 301 A 1 HETATM 11 O O4' SAH . . . B 2 -10.181 -11.78 -21.195 1 22.79 ? O4' SAH 301 A 1 HETATM 12 C C3' SAH . . . B 2 -10.254 -12.093 -18.874 1 20 ? C3' SAH 301 A 1 HETATM 13 O O3' SAH . . . B 2 -10.769 -13.313 -18.348 1 17.62 ? O3' SAH 301 A 1 HETATM 14 C C2' SAH . . . B 2 -8.829 -12.323 -19.353 1 21.02 ? C2' SAH 301 A 1 HETATM 15 O O2' SAH . . . B 2 -8.185 -13.437 -18.685 1 20.3 ? O2' SAH 301 A 1 HETATM 16 C C1' SAH . . . B 2 -9.043 -12.544 -20.828 1 22.1 ? C1' SAH 301 A 1 HETATM 17 N N9 SAH . . . B 2 -7.905 -12.174 -21.691 1 25.36 ? N9 SAH 301 A 1 HETATM 18 C C8 SAH . . . B 2 -7.101 -11.074 -21.587 1 24.79 ? C8 SAH 301 A 1 HETATM 19 N N7 SAH . . . B 2 -6.15 -11.095 -22.548 1 28.41 ? N7 SAH 301 A 1 HETATM 20 C C5 SAH . . . B 2 -6.336 -12.247 -23.244 1 22.02 ? C5 SAH 301 A 1 HETATM 21 C C6 SAH . . . B 2 -5.663 -12.884 -24.373 1 20.57 ? C6 SAH 301 A 1 HETATM 22 N N6 SAH . . . B 2 -4.612 -12.218 -24.886 1 22.95 ? N6 SAH 301 A 1 HETATM 23 N N1 SAH . . . B 2 -6.176 -14.052 -24.823 1 20.07 ? N1 SAH 301 A 1 HETATM 24 C C2 SAH . . . B 2 -7.209 -14.67 -24.242 1 17.33 ? C2 SAH 301 A 1 HETATM 25 N N3 SAH . . . B 2 -7.89 -14.155 -23.203 1 19.29 ? N3 SAH 301 A 1 HETATM 26 C C4 SAH . . . B 2 -7.499 -12.966 -22.685 1 20.9 ? C4 SAH 301 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 244 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 26 #