data_5BT3 # _model_server_result.job_id SBkzd5asWTuVuNNagdLYMw _model_server_result.datetime_utc '2025-02-17 23:56:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5bt3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1201}' # _entry.id 5BT3 # _exptl.entry_id 5BT3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 509.04 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[2-(3-chloro-4-methoxyphenyl)ethyl]-5-(3,5-dimethyl-1,2-oxazol-4-yl)-1-[(2S)-2-(morpholin-4-yl)propyl]-1H-benzimidazole _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5BT3 _cell.length_a 53.431 _cell.length_b 53.431 _cell.length_c 77.003 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5BT3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C28 H33 Cl N4 O3' _chem_comp.formula_weight 509.04 _chem_comp.id 2LO _chem_comp.mon_nstd_flag . _chem_comp.name 2-[2-(3-chloro-4-methoxyphenyl)ethyl]-5-(3,5-dimethyl-1,2-oxazol-4-yl)-1-[(2S)-2-(morpholin-4-yl)propyl]-1H-benzimidazole _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C27 C26 2LO sing 1 n n O2 C26 2LO sing 2 n y O2 N3 2LO sing 3 n y C26 C2 2LO doub 4 n y C11 C10 2LO sing 5 n n C11 C12 2LO sing 6 n n N C7 2LO sing 7 n y N C9 2LO doub 8 n y C8 C7 2LO doub 9 n y C8 C3 2LO sing 10 n y C10 C9 2LO sing 11 n n N3 C1 2LO doub 12 n y C2 C3 2LO sing 13 n n C2 C1 2LO sing 14 n y C7 C6 2LO sing 15 n y C9 N1 2LO sing 16 n y C12 C17 2LO doub 17 n y C12 C13 2LO sing 18 n y C17 C16 2LO sing 19 n y C3 C4 2LO doub 20 n y C1 C 2LO sing 21 n n C6 N1 2LO sing 22 n y C6 C5 2LO doub 23 n y N1 C19 2LO sing 24 n n C13 C14 2LO doub 25 n y C16 CL 2LO sing 26 n n C16 C15 2LO doub 27 n y C4 C5 2LO sing 28 n y C14 C15 2LO sing 29 n y C19 C20 2LO sing 30 n n C15 O 2LO sing 31 n n C20 C21 2LO sing 32 n n C20 N2 2LO sing 33 n n O C18 2LO sing 34 n n N2 C22 2LO sing 35 n n N2 C25 2LO sing 36 n n C22 C23 2LO sing 37 n n C25 C24 2LO sing 38 n n C23 O1 2LO sing 39 n n C24 O1 2LO sing 40 n n C18 H1 2LO sing 41 n n C18 H2 2LO sing 42 n n C18 H3 2LO sing 43 n n C14 H4 2LO sing 44 n n C13 H5 2LO sing 45 n n C17 H6 2LO sing 46 n n C11 H7 2LO sing 47 n n C11 H8 2LO sing 48 n n C10 H9 2LO sing 49 n n C10 H10 2LO sing 50 n n C19 H11 2LO sing 51 n n C19 H12 2LO sing 52 n n C20 H13 2LO sing 53 n n C25 H15 2LO sing 54 n n C25 H16 2LO sing 55 n n C24 H17 2LO sing 56 n n C24 H18 2LO sing 57 n n C23 H19 2LO sing 58 n n C23 H20 2LO sing 59 n n C22 H21 2LO sing 60 n n C22 H22 2LO sing 61 n n C21 H23 2LO sing 62 n n C21 H24 2LO sing 63 n n C21 H25 2LO sing 64 n n C5 H26 2LO sing 65 n n C4 H27 2LO sing 66 n n C8 H28 2LO sing 67 n n C27 H29 2LO sing 68 n n C27 H30 2LO sing 69 n n C27 H31 2LO sing 70 n n C H32 2LO sing 71 n n C H33 2LO sing 72 n n C H34 2LO sing 73 n n # _atom_sites.entry_id 5BT3 _atom_sites.fract_transf_matrix[1][1] 0.018716 _atom_sites.fract_transf_matrix[1][2] 0.010806 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021611 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012987 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 2LO A 1 1201 1 2LO DRG . C 3 IPA A 1 1202 1 IPA IPA . D 4 HOH A 1 1301 163 HOH HOH . D 4 HOH A 2 1302 24 HOH HOH . D 4 HOH A 3 1303 149 HOH HOH . D 4 HOH A 4 1304 104 HOH HOH . D 4 HOH A 5 1305 125 HOH HOH . D 4 HOH A 6 1306 32 HOH HOH . D 4 HOH A 7 1307 77 HOH HOH . D 4 HOH A 8 1308 134 HOH HOH . D 4 HOH A 9 1309 91 HOH HOH . D 4 HOH A 10 1310 100 HOH HOH . D 4 HOH A 11 1311 39 HOH HOH . D 4 HOH A 12 1312 28 HOH HOH . D 4 HOH A 13 1313 20 HOH HOH . D 4 HOH A 14 1314 62 HOH HOH . D 4 HOH A 15 1315 92 HOH HOH . D 4 HOH A 16 1316 44 HOH HOH . D 4 HOH A 17 1317 14 HOH HOH . D 4 HOH A 18 1318 173 HOH HOH . D 4 HOH A 19 1319 59 HOH HOH . D 4 HOH A 20 1320 18 HOH HOH . D 4 HOH A 21 1321 64 HOH HOH . D 4 HOH A 22 1322 147 HOH HOH . D 4 HOH A 23 1323 186 HOH HOH . D 4 HOH A 24 1324 143 HOH HOH . D 4 HOH A 25 1325 67 HOH HOH . D 4 HOH A 26 1326 35 HOH HOH . D 4 HOH A 27 1327 58 HOH HOH . D 4 HOH A 28 1328 1 HOH HOH . D 4 HOH A 29 1329 131 HOH HOH . D 4 HOH A 30 1330 141 HOH HOH . D 4 HOH A 31 1331 139 HOH HOH . D 4 HOH A 32 1332 110 HOH HOH . D 4 HOH A 33 1333 11 HOH HOH . D 4 HOH A 34 1334 84 HOH HOH . D 4 HOH A 35 1335 117 HOH HOH . D 4 HOH A 36 1336 137 HOH HOH . D 4 HOH A 37 1337 36 HOH HOH . D 4 HOH A 38 1338 52 HOH HOH . D 4 HOH A 39 1339 3 HOH HOH . D 4 HOH A 40 1340 167 HOH HOH . D 4 HOH A 41 1341 47 HOH HOH . D 4 HOH A 42 1342 41 HOH HOH . D 4 HOH A 43 1343 56 HOH HOH . D 4 HOH A 44 1344 42 HOH HOH . D 4 HOH A 45 1345 61 HOH HOH . D 4 HOH A 46 1346 8 HOH HOH . D 4 HOH A 47 1347 74 HOH HOH . D 4 HOH A 48 1348 4 HOH HOH . D 4 HOH A 49 1349 106 HOH HOH . D 4 HOH A 50 1350 17 HOH HOH . D 4 HOH A 51 1351 88 HOH HOH . D 4 HOH A 52 1352 123 HOH HOH . D 4 HOH A 53 1353 22 HOH HOH . D 4 HOH A 54 1354 102 HOH HOH . D 4 HOH A 55 1355 122 HOH HOH . D 4 HOH A 56 1356 6 HOH HOH . D 4 HOH A 57 1357 170 HOH HOH . D 4 HOH A 58 1358 33 HOH HOH . D 4 HOH A 59 1359 70 HOH HOH . D 4 HOH A 60 1360 21 HOH HOH . D 4 HOH A 61 1361 175 HOH HOH . D 4 HOH A 62 1362 30 HOH HOH . D 4 HOH A 63 1363 72 HOH HOH . D 4 HOH A 64 1364 169 HOH HOH . D 4 HOH A 65 1365 40 HOH HOH . D 4 HOH A 66 1366 171 HOH HOH . D 4 HOH A 67 1367 34 HOH HOH . D 4 HOH A 68 1368 99 HOH HOH . D 4 HOH A 69 1369 85 HOH HOH . D 4 HOH A 70 1370 13 HOH HOH . D 4 HOH A 71 1371 55 HOH HOH . D 4 HOH A 72 1372 81 HOH HOH . D 4 HOH A 73 1373 113 HOH HOH . D 4 HOH A 74 1374 86 HOH HOH . D 4 HOH A 75 1375 38 HOH HOH . D 4 HOH A 76 1376 19 HOH HOH . D 4 HOH A 77 1377 7 HOH HOH . D 4 HOH A 78 1378 161 HOH HOH . D 4 HOH A 79 1379 5 HOH HOH . D 4 HOH A 80 1380 46 HOH HOH . D 4 HOH A 81 1381 145 HOH HOH . D 4 HOH A 82 1382 25 HOH HOH . D 4 HOH A 83 1383 23 HOH HOH . D 4 HOH A 84 1384 51 HOH HOH . D 4 HOH A 85 1385 26 HOH HOH . D 4 HOH A 86 1386 63 HOH HOH . D 4 HOH A 87 1387 183 HOH HOH . D 4 HOH A 88 1388 172 HOH HOH . D 4 HOH A 89 1389 66 HOH HOH . D 4 HOH A 90 1390 15 HOH HOH . D 4 HOH A 91 1391 79 HOH HOH . D 4 HOH A 92 1392 127 HOH HOH . D 4 HOH A 93 1393 49 HOH HOH . D 4 HOH A 94 1394 75 HOH HOH . D 4 HOH A 95 1395 93 HOH HOH . D 4 HOH A 96 1396 164 HOH HOH . D 4 HOH A 97 1397 80 HOH HOH . D 4 HOH A 98 1398 152 HOH HOH . D 4 HOH A 99 1399 9 HOH HOH . D 4 HOH A 100 1400 120 HOH HOH . D 4 HOH A 101 1401 29 HOH HOH . D 4 HOH A 102 1402 73 HOH HOH . D 4 HOH A 103 1403 71 HOH HOH . D 4 HOH A 104 1404 94 HOH HOH . D 4 HOH A 105 1405 158 HOH HOH . D 4 HOH A 106 1406 27 HOH HOH . D 4 HOH A 107 1407 111 HOH HOH . D 4 HOH A 108 1408 45 HOH HOH . D 4 HOH A 109 1409 10 HOH HOH . D 4 HOH A 110 1410 133 HOH HOH . D 4 HOH A 111 1411 180 HOH HOH . D 4 HOH A 112 1412 129 HOH HOH . D 4 HOH A 113 1413 60 HOH HOH . D 4 HOH A 114 1414 54 HOH HOH . D 4 HOH A 115 1415 126 HOH HOH . D 4 HOH A 116 1416 57 HOH HOH . D 4 HOH A 117 1417 150 HOH HOH . D 4 HOH A 118 1418 37 HOH HOH . D 4 HOH A 119 1419 16 HOH HOH . D 4 HOH A 120 1420 96 HOH HOH . D 4 HOH A 121 1421 12 HOH HOH . D 4 HOH A 122 1422 148 HOH HOH . D 4 HOH A 123 1423 130 HOH HOH . D 4 HOH A 124 1424 119 HOH HOH . D 4 HOH A 125 1425 31 HOH HOH . D 4 HOH A 126 1426 2 HOH HOH . D 4 HOH A 127 1427 140 HOH HOH . D 4 HOH A 128 1428 109 HOH HOH . D 4 HOH A 129 1429 165 HOH HOH . D 4 HOH A 130 1430 151 HOH HOH . D 4 HOH A 131 1431 116 HOH HOH . D 4 HOH A 132 1432 65 HOH HOH . D 4 HOH A 133 1433 159 HOH HOH . D 4 HOH A 134 1434 68 HOH HOH . D 4 HOH A 135 1435 135 HOH HOH . D 4 HOH A 136 1436 118 HOH HOH . D 4 HOH A 137 1437 90 HOH HOH . D 4 HOH A 138 1438 98 HOH HOH . D 4 HOH A 139 1439 89 HOH HOH . D 4 HOH A 140 1440 48 HOH HOH . D 4 HOH A 141 1441 174 HOH HOH . D 4 HOH A 142 1442 181 HOH HOH . D 4 HOH A 143 1443 107 HOH HOH . D 4 HOH A 144 1444 69 HOH HOH . D 4 HOH A 145 1445 189 HOH HOH . D 4 HOH A 146 1446 83 HOH HOH . D 4 HOH A 147 1447 156 HOH HOH . D 4 HOH A 148 1448 187 HOH HOH . D 4 HOH A 149 1449 97 HOH HOH . D 4 HOH A 150 1450 108 HOH HOH . D 4 HOH A 151 1451 155 HOH HOH . D 4 HOH A 152 1452 103 HOH HOH . D 4 HOH A 153 1453 157 HOH HOH . D 4 HOH A 154 1454 185 HOH HOH . D 4 HOH A 155 1455 105 HOH HOH . D 4 HOH A 156 1456 132 HOH HOH . D 4 HOH A 157 1457 178 HOH HOH . D 4 HOH A 158 1458 177 HOH HOH . D 4 HOH A 159 1459 153 HOH HOH . D 4 HOH A 160 1460 142 HOH HOH . D 4 HOH A 161 1461 50 HOH HOH . D 4 HOH A 162 1462 76 HOH HOH . D 4 HOH A 163 1463 115 HOH HOH . D 4 HOH A 164 1464 176 HOH HOH . D 4 HOH A 165 1465 101 HOH HOH . D 4 HOH A 166 1466 82 HOH HOH . D 4 HOH A 167 1467 168 HOH HOH . D 4 HOH A 168 1468 121 HOH HOH . D 4 HOH A 169 1469 162 HOH HOH . D 4 HOH A 170 1470 124 HOH HOH . D 4 HOH A 171 1471 87 HOH HOH . D 4 HOH A 172 1472 53 HOH HOH . D 4 HOH A 173 1473 128 HOH HOH . D 4 HOH A 174 1474 166 HOH HOH . D 4 HOH A 175 1475 179 HOH HOH . D 4 HOH A 176 1476 43 HOH HOH . D 4 HOH A 177 1477 95 HOH HOH . D 4 HOH A 178 1478 112 HOH HOH . D 4 HOH A 179 1479 138 HOH HOH . D 4 HOH A 180 1480 114 HOH HOH . D 4 HOH A 181 1481 184 HOH HOH . D 4 HOH A 182 1482 182 HOH HOH . D 4 HOH A 183 1483 136 HOH HOH . D 4 HOH A 184 1484 78 HOH HOH . D 4 HOH A 185 1485 154 HOH HOH . D 4 HOH A 186 1486 146 HOH HOH . D 4 HOH A 187 1487 144 HOH HOH . D 4 HOH A 188 1488 188 HOH HOH . D 4 HOH A 189 1489 160 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 CL CL 2LO . . . B 2 22.93 1.658 9.429 1 8.65 ? CL 2LO 1201 A 1 HETATM 2 C C16 2LO . . . B 2 23.889 1.146 8.112 1 6.44 ? C16 2LO 1201 A 1 HETATM 3 C C15 2LO . . . B 2 25.278 1.324 8.119 1 6.23 ? C15 2LO 1201 A 1 HETATM 4 O O 2LO . . . B 2 25.802 1.961 9.227 1 6.36 ? O 2LO 1201 A 1 HETATM 5 C C18 2LO . . . B 2 27.22 2.185 9.265 1 6.5 ? C18 2LO 1201 A 1 HETATM 6 C C14 2LO . . . B 2 26.043 0.87 7.041 1 6.01 ? C14 2LO 1201 A 1 HETATM 7 C C13 2LO . . . B 2 25.412 0.268 5.955 1 5.81 ? C13 2LO 1201 A 1 HETATM 8 C C17 2LO . . . B 2 23.271 0.543 7.015 1 6.15 ? C17 2LO 1201 A 1 HETATM 9 C C12 2LO . . . B 2 24.029 0.085 5.927 1 5.76 ? C12 2LO 1201 A 1 HETATM 10 C C11 2LO . . . B 2 23.388 -0.506 4.795 1 5.61 ? C11 2LO 1201 A 1 HETATM 11 C C10 2LO . . . B 2 23.33 0.491 3.616 1 5.55 ? C10 2LO 1201 A 1 HETATM 12 C C9 2LO . . . B 2 22.671 1.811 3.985 1 5.43 ? C9 2LO 1201 A 1 HETATM 13 N N1 2LO . . . B 2 23.193 3.026 3.774 1 5.39 ? N1 2LO 1201 A 1 HETATM 14 C C19 2LO . . . B 2 24.49 3.387 3.098 1 5.63 ? C19 2LO 1201 A 1 HETATM 15 C C20 2LO . . . B 2 25.724 3.236 3.958 1 5.82 ? C20 2LO 1201 A 1 HETATM 16 N N2 2LO . . . B 2 26.952 3.448 3.098 1 6.09 ? N2 2LO 1201 A 1 HETATM 17 C C25 2LO . . . B 2 28.155 3.018 3.785 1 6.55 ? C25 2LO 1201 A 1 HETATM 18 C C24 2LO . . . B 2 29.347 3.074 2.839 1 7.01 ? C24 2LO 1201 A 1 HETATM 19 O O1 2LO . . . B 2 29.472 4.426 2.345 1 7.53 ? O1 2LO 1201 A 1 HETATM 20 C C23 2LO . . . B 2 28.292 4.834 1.653 1 6.93 ? C23 2LO 1201 A 1 HETATM 21 C C22 2LO . . . B 2 27.101 4.801 2.611 1 6.37 ? C22 2LO 1201 A 1 HETATM 22 C C21 2LO . . . B 2 25.637 4.186 5.163 1 5.84 ? C21 2LO 1201 A 1 HETATM 23 C C6 2LO . . . B 2 22.292 3.936 4.223 1 5.42 ? C6 2LO 1201 A 1 HETATM 24 C C5 2LO . . . B 2 22.275 5.294 4.244 1 5.62 ? C5 2LO 1201 A 1 HETATM 25 C C4 2LO . . . B 2 21.172 5.975 4.772 1 5.87 ? C4 2LO 1201 A 1 HETATM 26 N N 2LO . . . B 2 21.484 1.9 4.557 1 5.5 ? N 2LO 1201 A 1 HETATM 27 C C7 2LO . . . B 2 21.239 3.226 4.71 1 5.56 ? C7 2LO 1201 A 1 HETATM 28 C C8 2LO . . . B 2 20.161 3.858 5.231 1 5.88 ? C8 2LO 1201 A 1 HETATM 29 C C3 2LO . . . B 2 20.069 5.268 5.279 1 6.1 ? C3 2LO 1201 A 1 HETATM 30 C C2 2LO . . . B 2 18.934 5.896 5.79 1 7.24 ? C2 2LO 1201 A 1 HETATM 31 C C26 2LO . . . B 2 17.652 5.61 5.374 1 7.99 ? C26 2LO 1201 A 1 HETATM 32 C C27 2LO . . . B 2 17.255 4.604 4.305 1 8.49 ? C27 2LO 1201 A 1 HETATM 33 O O2 2LO . . . B 2 16.706 6.295 5.988 1 9.33 ? O2 2LO 1201 A 1 HETATM 34 N N3 2LO . . . B 2 17.586 7.21 6.958 1 9.62 ? N3 2LO 1201 A 1 HETATM 35 C C1 2LO . . . B 2 18.862 6.874 6.718 1 8.15 ? C1 2LO 1201 A 1 HETATM 36 C C 2LO . . . B 2 20.044 7.506 7.438 1 8.55 ? C 2LO 1201 A 1 # _model_server_stats.io_time_ms 42 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 521 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 36 #