data_5BT5 # _model_server_result.job_id JO0VHgFzo4TjyDcVGIMuNw _model_server_result.datetime_utc '2024-11-24 20:43:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5bt5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":505}' # _entry.id 5BT5 # _exptl.entry_id 5BT5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 509.04 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[2-(3-chloro-4-methoxyphenyl)ethyl]-5-(3,5-dimethyl-1,2-oxazol-4-yl)-1-[(2S)-2-(morpholin-4-yl)propyl]-1H-benzimidazole _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5BT5 _cell.length_a 52.761 _cell.length_b 71.806 _cell.length_c 31.996 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5BT5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C28 H33 Cl N4 O3' _chem_comp.formula_weight 509.04 _chem_comp.id 2LO _chem_comp.mon_nstd_flag . _chem_comp.name 2-[2-(3-chloro-4-methoxyphenyl)ethyl]-5-(3,5-dimethyl-1,2-oxazol-4-yl)-1-[(2S)-2-(morpholin-4-yl)propyl]-1H-benzimidazole _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C27 C26 2LO sing 1 n n O2 C26 2LO sing 2 n y O2 N3 2LO sing 3 n y C26 C2 2LO doub 4 n y C11 C10 2LO sing 5 n n C11 C12 2LO sing 6 n n N C7 2LO sing 7 n y N C9 2LO doub 8 n y C8 C7 2LO doub 9 n y C8 C3 2LO sing 10 n y C10 C9 2LO sing 11 n n N3 C1 2LO doub 12 n y C2 C3 2LO sing 13 n n C2 C1 2LO sing 14 n y C7 C6 2LO sing 15 n y C9 N1 2LO sing 16 n y C12 C17 2LO doub 17 n y C12 C13 2LO sing 18 n y C17 C16 2LO sing 19 n y C3 C4 2LO doub 20 n y C1 C 2LO sing 21 n n C6 N1 2LO sing 22 n y C6 C5 2LO doub 23 n y N1 C19 2LO sing 24 n n C13 C14 2LO doub 25 n y C16 CL 2LO sing 26 n n C16 C15 2LO doub 27 n y C4 C5 2LO sing 28 n y C14 C15 2LO sing 29 n y C19 C20 2LO sing 30 n n C15 O 2LO sing 31 n n C20 C21 2LO sing 32 n n C20 N2 2LO sing 33 n n O C18 2LO sing 34 n n N2 C22 2LO sing 35 n n N2 C25 2LO sing 36 n n C22 C23 2LO sing 37 n n C25 C24 2LO sing 38 n n C23 O1 2LO sing 39 n n C24 O1 2LO sing 40 n n C18 H1 2LO sing 41 n n C18 H2 2LO sing 42 n n C18 H3 2LO sing 43 n n C14 H4 2LO sing 44 n n C13 H5 2LO sing 45 n n C17 H6 2LO sing 46 n n C11 H7 2LO sing 47 n n C11 H8 2LO sing 48 n n C10 H9 2LO sing 49 n n C10 H10 2LO sing 50 n n C19 H11 2LO sing 51 n n C19 H12 2LO sing 52 n n C20 H13 2LO sing 53 n n C25 H15 2LO sing 54 n n C25 H16 2LO sing 55 n n C24 H17 2LO sing 56 n n C24 H18 2LO sing 57 n n C23 H19 2LO sing 58 n n C23 H20 2LO sing 59 n n C22 H21 2LO sing 60 n n C22 H22 2LO sing 61 n n C21 H23 2LO sing 62 n n C21 H24 2LO sing 63 n n C21 H25 2LO sing 64 n n C5 H26 2LO sing 65 n n C4 H27 2LO sing 66 n n C8 H28 2LO sing 67 n n C27 H29 2LO sing 68 n n C27 H30 2LO sing 69 n n C27 H31 2LO sing 70 n n C H32 2LO sing 71 n n C H33 2LO sing 72 n n C H34 2LO sing 73 n n # _atom_sites.entry_id 5BT5 _atom_sites.fract_transf_matrix[1][1] 0.018953 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013926 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.031254 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 501 1 EDO EDO . C 2 EDO A 1 502 2 EDO EDO . D 2 EDO A 1 503 3 EDO EDO . E 2 EDO A 1 504 4 EDO EDO . F 3 2LO A 1 505 1 2LO DRG . G 4 HOH A 1 601 117 HOH HOH . G 4 HOH A 2 602 121 HOH HOH . G 4 HOH A 3 603 14 HOH HOH . G 4 HOH A 4 604 1 HOH HOH . G 4 HOH A 5 605 75 HOH HOH . G 4 HOH A 6 606 6 HOH HOH . G 4 HOH A 7 607 8 HOH HOH . G 4 HOH A 8 608 29 HOH HOH . G 4 HOH A 9 609 38 HOH HOH . G 4 HOH A 10 610 126 HOH HOH . G 4 HOH A 11 611 99 HOH HOH . G 4 HOH A 12 612 17 HOH HOH . G 4 HOH A 13 613 32 HOH HOH . G 4 HOH A 14 614 37 HOH HOH . G 4 HOH A 15 615 67 HOH HOH . G 4 HOH A 16 616 7 HOH HOH . G 4 HOH A 17 617 23 HOH HOH . G 4 HOH A 18 618 5 HOH HOH . G 4 HOH A 19 619 97 HOH HOH . G 4 HOH A 20 620 58 HOH HOH . G 4 HOH A 21 621 9 HOH HOH . G 4 HOH A 22 622 24 HOH HOH . G 4 HOH A 23 623 76 HOH HOH . G 4 HOH A 24 624 43 HOH HOH . G 4 HOH A 25 625 49 HOH HOH . G 4 HOH A 26 626 60 HOH HOH . G 4 HOH A 27 627 26 HOH HOH . G 4 HOH A 28 628 77 HOH HOH . G 4 HOH A 29 629 3 HOH HOH . G 4 HOH A 30 630 12 HOH HOH . G 4 HOH A 31 631 31 HOH HOH . G 4 HOH A 32 632 34 HOH HOH . G 4 HOH A 33 633 90 HOH HOH . G 4 HOH A 34 634 51 HOH HOH . G 4 HOH A 35 635 10 HOH HOH . G 4 HOH A 36 636 50 HOH HOH . G 4 HOH A 37 637 41 HOH HOH . G 4 HOH A 38 638 28 HOH HOH . G 4 HOH A 39 639 4 HOH HOH . G 4 HOH A 40 640 13 HOH HOH . G 4 HOH A 41 641 88 HOH HOH . G 4 HOH A 42 642 74 HOH HOH . G 4 HOH A 43 643 71 HOH HOH . G 4 HOH A 44 644 73 HOH HOH . G 4 HOH A 45 645 25 HOH HOH . G 4 HOH A 46 646 42 HOH HOH . G 4 HOH A 47 647 96 HOH HOH . G 4 HOH A 48 648 87 HOH HOH . G 4 HOH A 49 649 103 HOH HOH . G 4 HOH A 50 650 63 HOH HOH . G 4 HOH A 51 651 93 HOH HOH . G 4 HOH A 52 652 21 HOH HOH . G 4 HOH A 53 653 16 HOH HOH . G 4 HOH A 54 654 94 HOH HOH . G 4 HOH A 55 655 101 HOH HOH . G 4 HOH A 56 656 80 HOH HOH . G 4 HOH A 57 657 55 HOH HOH . G 4 HOH A 58 658 111 HOH HOH . G 4 HOH A 59 659 83 HOH HOH . G 4 HOH A 60 660 64 HOH HOH . G 4 HOH A 61 661 22 HOH HOH . G 4 HOH A 62 662 11 HOH HOH . G 4 HOH A 63 663 48 HOH HOH . G 4 HOH A 64 664 81 HOH HOH . G 4 HOH A 65 665 39 HOH HOH . G 4 HOH A 66 666 85 HOH HOH . G 4 HOH A 67 667 110 HOH HOH . G 4 HOH A 68 668 53 HOH HOH . G 4 HOH A 69 669 95 HOH HOH . G 4 HOH A 70 670 46 HOH HOH . G 4 HOH A 71 671 114 HOH HOH . G 4 HOH A 72 672 107 HOH HOH . G 4 HOH A 73 673 15 HOH HOH . G 4 HOH A 74 674 89 HOH HOH . G 4 HOH A 75 675 109 HOH HOH . G 4 HOH A 76 676 36 HOH HOH . G 4 HOH A 77 677 115 HOH HOH . G 4 HOH A 78 678 40 HOH HOH . G 4 HOH A 79 679 20 HOH HOH . G 4 HOH A 80 680 35 HOH HOH . G 4 HOH A 81 681 30 HOH HOH . G 4 HOH A 82 682 78 HOH HOH . G 4 HOH A 83 683 2 HOH HOH . G 4 HOH A 84 684 66 HOH HOH . G 4 HOH A 85 685 52 HOH HOH . G 4 HOH A 86 686 79 HOH HOH . G 4 HOH A 87 687 44 HOH HOH . G 4 HOH A 88 688 108 HOH HOH . G 4 HOH A 89 689 18 HOH HOH . G 4 HOH A 90 690 72 HOH HOH . G 4 HOH A 91 691 104 HOH HOH . G 4 HOH A 92 692 106 HOH HOH . G 4 HOH A 93 693 70 HOH HOH . G 4 HOH A 94 694 61 HOH HOH . G 4 HOH A 95 695 92 HOH HOH . G 4 HOH A 96 696 98 HOH HOH . G 4 HOH A 97 697 57 HOH HOH . G 4 HOH A 98 698 120 HOH HOH . G 4 HOH A 99 699 118 HOH HOH . G 4 HOH A 100 700 123 HOH HOH . G 4 HOH A 101 701 19 HOH HOH . G 4 HOH A 102 702 47 HOH HOH . G 4 HOH A 103 703 33 HOH HOH . G 4 HOH A 104 704 68 HOH HOH . G 4 HOH A 105 705 113 HOH HOH . G 4 HOH A 106 706 102 HOH HOH . G 4 HOH A 107 707 119 HOH HOH . G 4 HOH A 108 708 27 HOH HOH . G 4 HOH A 109 709 69 HOH HOH . G 4 HOH A 110 710 116 HOH HOH . G 4 HOH A 111 711 56 HOH HOH . G 4 HOH A 112 712 91 HOH HOH . G 4 HOH A 113 713 86 HOH HOH . G 4 HOH A 114 714 54 HOH HOH . G 4 HOH A 115 715 59 HOH HOH . G 4 HOH A 116 716 65 HOH HOH . G 4 HOH A 117 717 127 HOH HOH . G 4 HOH A 118 718 125 HOH HOH . G 4 HOH A 119 719 62 HOH HOH . G 4 HOH A 120 720 82 HOH HOH . G 4 HOH A 121 721 84 HOH HOH . G 4 HOH A 122 722 100 HOH HOH . G 4 HOH A 123 723 105 HOH HOH . G 4 HOH A 124 724 112 HOH HOH . G 4 HOH A 125 725 124 HOH HOH . G 4 HOH A 126 726 45 HOH HOH . G 4 HOH A 127 727 122 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 CL CL 2LO . . . F 3 -25.042 2.598 -4.533 1 65.12 ? CL 2LO 505 A 1 HETATM 2 C C16 2LO . . . F 3 -24.746 1.888 -6.15 1 59.19 ? C16 2LO 505 A 1 HETATM 3 C C15 2LO . . . F 3 -25.262 2.466 -7.321 1 58.44 ? C15 2LO 505 A 1 HETATM 4 O O 2LO . . . F 3 -25.987 3.631 -7.208 1 58.55 ? O 2LO 505 A 1 HETATM 5 C C18 2LO . . . F 3 -27.321 3.567 -6.68 1 57.96 ? C18 2LO 505 A 1 HETATM 6 C C14 2LO . . . F 3 -24.998 1.871 -8.563 1 55.58 ? C14 2LO 505 A 1 HETATM 7 C C13 2LO . . . F 3 -24.237 0.693 -8.653 1 53.04 ? C13 2LO 505 A 1 HETATM 8 C C17 2LO . . . F 3 -23.989 0.712 -6.255 1 55.58 ? C17 2LO 505 A 1 HETATM 9 C C12 2LO . . . F 3 -23.719 0.092 -7.488 1 50.2 ? C12 2LO 505 A 1 HETATM 10 C C11 2LO . . . F 3 -22.924 -1.092 -7.417 1 43.92 ? C11 2LO 505 A 1 HETATM 11 C C10 2LO . . . F 3 -22.52 -1.799 -8.74 1 38.64 ? C10 2LO 505 A 1 HETATM 12 C C9 2LO . . . F 3 -21.223 -2.666 -8.578 1 34.26 ? C9 2LO 505 A 1 HETATM 13 N N1 2LO . . . F 3 -20.759 -3.589 -9.437 1 31.94 ? N1 2LO 505 A 1 HETATM 14 C C19 2LO . . . F 3 -21.338 -4.083 -10.764 1 34.41 ? C19 2LO 505 A 1 HETATM 15 C C20 2LO . . . F 3 -20.675 -3.33 -11.923 1 36.07 ? C20 2LO 505 A 1 HETATM 16 N N2 2LO . . . F 3 -19.218 -3.662 -12.206 1 37.83 ? N2 2LO 505 A 1 HETATM 17 C C25 2LO . . . F 3 -18.533 -2.712 -13.069 1 37.37 ? C25 2LO 505 A 1 HETATM 18 C C24 2LO . . . F 3 -17.071 -3.038 -13.24 1 36.8 ? C24 2LO 505 A 1 HETATM 19 O O1 2LO . . . F 3 -17.049 -4.356 -13.788 1 38.25 ? O1 2LO 505 A 1 HETATM 20 C C23 2LO . . . F 3 -17.764 -5.348 -13 1 37.92 ? C23 2LO 505 A 1 HETATM 21 C C22 2LO . . . F 3 -19.198 -4.97 -12.821 1 38.18 ? C22 2LO 505 A 1 HETATM 22 C C21 2LO . . . F 3 -21.632 -3.412 -13.145 1 36.24 ? C21 2LO 505 A 1 HETATM 23 C C6 2LO . . . F 3 -19.635 -4.076 -8.885 1 29.33 ? C6 2LO 505 A 1 HETATM 24 C C5 2LO . . . F 3 -18.793 -5.018 -9.307 1 28.13 ? C5 2LO 505 A 1 HETATM 25 C C4 2LO . . . F 3 -17.663 -5.369 -8.585 1 27.12 ? C4 2LO 505 A 1 HETATM 26 N N 2LO . . . F 3 -20.384 -2.587 -7.541 1 31.58 ? N 2LO 505 A 1 HETATM 27 C C7 2LO . . . F 3 -19.396 -3.463 -7.717 1 28.95 ? C7 2LO 505 A 1 HETATM 28 C C8 2LO . . . F 3 -18.318 -3.775 -6.952 1 27.79 ? C8 2LO 505 A 1 HETATM 29 C C3 2LO . . . F 3 -17.395 -4.762 -7.36 1 26.11 ? C3 2LO 505 A 1 HETATM 30 C C2 2LO . . . F 3 -16.268 -5.144 -6.688 1 24.44 ? C2 2LO 505 A 1 HETATM 31 C C26 2LO . . . F 3 -15.959 -6.42 -6.377 1 24.63 ? C26 2LO 505 A 1 HETATM 32 C C27 2LO . . . F 3 -16.804 -7.665 -6.657 1 24.97 ? C27 2LO 505 A 1 HETATM 33 O O2 2LO . . . F 3 -14.758 -6.51 -5.756 1 24.32 ? O2 2LO 505 A 1 HETATM 34 N N3 2LO . . . F 3 -14.3 -5.02 -5.675 1 23.44 ? N3 2LO 505 A 1 HETATM 35 C C1 2LO . . . F 3 -15.276 -4.332 -6.265 1 23.6 ? C1 2LO 505 A 1 HETATM 36 C C 2LO . . . F 3 -15.193 -2.819 -6.418 1 23 ? C 2LO 505 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 378 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 36 #