data_5BU6 # _model_server_result.job_id gnIFOE9Nh_yZwplPiLrE0w _model_server_result.datetime_utc '2024-10-19 16:22:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5bu6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":408}' # _entry.id 5BU6 # _exptl.entry_id 5BU6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108 _cell.angle_gamma 90 _cell.entry_id 5BU6 _cell.length_a 47.947 _cell.length_b 77.785 _cell.length_c 76.861 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5BU6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,N 1 1 B,K,L,M,O 2 1 A,C,D,E,F,G,H,I,J,N 3 1 B,K,L,M,O 3 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 1_554 x,y,z-1 1 0 0 0 1 0 0 0 1 23.751355 0 -73.099155 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id J _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 84 A ASP 114 1_555 C NI NI . A NI 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc2 A NE2 HIS 154 A HIS 184 1_555 C NI NI . A NI 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? metalc ? metalc3 A NE2 HIS 159 A HIS 189 1_555 C NI NI . A NI 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? metalc ? metalc4 A NE2 HIS 210 A HIS 240 1_555 E NI NI . A NI 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? metalc ? metalc5 C NI NI . A NI 401 1_555 F S SCN . A SCN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? metalc ? metalc6 C NI NI . A NI 401 1_555 N O HOH . A HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? metalc ? metalc7 C NI NI . A NI 401 1_555 N O HOH . A HOH 522 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? metalc ? metalc8 E NI NI . A NI 403 1_555 G S SCN . A SCN 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc9 E NI NI . A NI 403 1_555 I S SCN . A SCN 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? metalc ? metalc10 E NI NI . A NI 403 1_556 B NE2 HIS 210 B HIS 240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? metalc ? metalc11 B OD1 ASP 84 B ASP 114 1_555 K NI NI . B NI 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc12 B NE2 HIS 154 B HIS 184 1_555 K NI NI . B NI 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? metalc ? metalc13 B NE2 HIS 159 B HIS 189 1_555 K NI NI . B NI 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? metalc ? metalc14 B ND1 HIS 209 B HIS 239 1_555 L NI NI . B NI 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.653 ? metalc ? metalc15 K NI NI . B NI 401 1_555 M S SCN . B SCN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? metalc ? metalc16 K NI NI . B NI 401 1_555 O O HOH . B HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc17 K NI NI . B NI 401 1_555 O O HOH . B HOH 532 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 5BU6 _atom_sites.fract_transf_matrix[1][1] 0.020856 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006778 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012856 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01368 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NI A 1 401 1 NI NI . D 2 NI A 1 402 2 NI NI . E 2 NI A 1 403 3 NI NI . F 3 SCN A 1 404 6 SCN SCN . G 3 SCN A 1 405 7 SCN SCN . H 3 SCN A 1 406 9 SCN SCN . I 3 SCN A 1 407 10 SCN SCN . J 4 EDO A 1 408 11 EDO EDO . K 2 NI B 1 401 4 NI NI . L 2 NI B 1 402 5 NI NI . M 3 SCN B 1 403 8 SCN SCN . N 5 HOH A 1 501 59 HOH HOH . N 5 HOH A 2 502 191 HOH HOH . N 5 HOH A 3 503 156 HOH HOH . N 5 HOH A 4 504 19 HOH HOH . N 5 HOH A 5 505 31 HOH HOH . N 5 HOH A 6 506 46 HOH HOH . N 5 HOH A 7 507 2 HOH HOH . N 5 HOH A 8 508 7 HOH HOH . N 5 HOH A 9 509 36 HOH HOH . N 5 HOH A 10 510 196 HOH HOH . N 5 HOH A 11 511 62 HOH HOH . N 5 HOH A 12 512 54 HOH HOH . N 5 HOH A 13 513 1 HOH HOH . N 5 HOH A 14 514 195 HOH HOH . N 5 HOH A 15 515 90 HOH HOH . N 5 HOH A 16 516 116 HOH HOH . N 5 HOH A 17 517 85 HOH HOH . N 5 HOH A 18 518 13 HOH HOH . N 5 HOH A 19 519 123 HOH HOH . N 5 HOH A 20 520 76 HOH HOH . N 5 HOH A 21 521 96 HOH HOH . N 5 HOH A 22 522 192 HOH HOH . N 5 HOH A 23 523 104 HOH HOH . N 5 HOH A 24 524 3 HOH HOH . N 5 HOH A 25 525 152 HOH HOH . N 5 HOH A 26 526 56 HOH HOH . N 5 HOH A 27 527 24 HOH HOH . N 5 HOH A 28 528 138 HOH HOH . N 5 HOH A 29 529 8 HOH HOH . N 5 HOH A 30 530 18 HOH HOH . N 5 HOH A 31 531 84 HOH HOH . N 5 HOH A 32 532 34 HOH HOH . N 5 HOH A 33 533 110 HOH HOH . N 5 HOH A 34 534 10 HOH HOH . N 5 HOH A 35 535 95 HOH HOH . N 5 HOH A 36 536 73 HOH HOH . N 5 HOH A 37 537 17 HOH HOH . N 5 HOH A 38 538 29 HOH HOH . N 5 HOH A 39 539 37 HOH HOH . N 5 HOH A 40 540 55 HOH HOH . N 5 HOH A 41 541 14 HOH HOH . N 5 HOH A 42 542 74 HOH HOH . N 5 HOH A 43 543 38 HOH HOH . N 5 HOH A 44 544 57 HOH HOH . N 5 HOH A 45 545 9 HOH HOH . N 5 HOH A 46 546 93 HOH HOH . N 5 HOH A 47 547 42 HOH HOH . N 5 HOH A 48 548 117 HOH HOH . N 5 HOH A 49 549 63 HOH HOH . N 5 HOH A 50 550 80 HOH HOH . N 5 HOH A 51 551 51 HOH HOH . N 5 HOH A 52 552 44 HOH HOH . N 5 HOH A 53 553 166 HOH HOH . N 5 HOH A 54 554 64 HOH HOH . N 5 HOH A 55 555 39 HOH HOH . N 5 HOH A 56 556 159 HOH HOH . N 5 HOH A 57 557 81 HOH HOH . N 5 HOH A 58 558 69 HOH HOH . N 5 HOH A 59 559 139 HOH HOH . N 5 HOH A 60 560 184 HOH HOH . N 5 HOH A 61 561 119 HOH HOH . N 5 HOH A 62 562 165 HOH HOH . N 5 HOH A 63 563 52 HOH HOH . N 5 HOH A 64 564 43 HOH HOH . N 5 HOH A 65 565 183 HOH HOH . N 5 HOH A 66 566 100 HOH HOH . N 5 HOH A 67 567 97 HOH HOH . N 5 HOH A 68 568 197 HOH HOH . N 5 HOH A 69 569 66 HOH HOH . N 5 HOH A 70 570 188 HOH HOH . N 5 HOH A 71 571 153 HOH HOH . N 5 HOH A 72 572 103 HOH HOH . N 5 HOH A 73 573 189 HOH HOH . O 5 HOH B 1 501 111 HOH HOH . O 5 HOH B 2 502 193 HOH HOH . O 5 HOH B 3 503 86 HOH HOH . O 5 HOH B 4 504 167 HOH HOH . O 5 HOH B 5 505 50 HOH HOH . O 5 HOH B 6 506 101 HOH HOH . O 5 HOH B 7 507 105 HOH HOH . O 5 HOH B 8 508 11 HOH HOH . O 5 HOH B 9 509 4 HOH HOH . O 5 HOH B 10 510 16 HOH HOH . O 5 HOH B 11 511 12 HOH HOH . O 5 HOH B 12 512 32 HOH HOH . O 5 HOH B 13 513 30 HOH HOH . O 5 HOH B 14 514 35 HOH HOH . O 5 HOH B 15 515 6 HOH HOH . O 5 HOH B 16 516 60 HOH HOH . O 5 HOH B 17 517 65 HOH HOH . O 5 HOH B 18 518 23 HOH HOH . O 5 HOH B 19 519 45 HOH HOH . O 5 HOH B 20 520 163 HOH HOH . O 5 HOH B 21 521 70 HOH HOH . O 5 HOH B 22 522 20 HOH HOH . O 5 HOH B 23 523 5 HOH HOH . O 5 HOH B 24 524 202 HOH HOH . O 5 HOH B 25 525 28 HOH HOH . O 5 HOH B 26 526 58 HOH HOH . O 5 HOH B 27 527 33 HOH HOH . O 5 HOH B 28 528 89 HOH HOH . O 5 HOH B 29 529 40 HOH HOH . O 5 HOH B 30 530 201 HOH HOH . O 5 HOH B 31 531 48 HOH HOH . O 5 HOH B 32 532 194 HOH HOH . O 5 HOH B 33 533 75 HOH HOH . O 5 HOH B 34 534 203 HOH HOH . O 5 HOH B 35 535 79 HOH HOH . O 5 HOH B 36 536 27 HOH HOH . O 5 HOH B 37 537 83 HOH HOH . O 5 HOH B 38 538 77 HOH HOH . O 5 HOH B 39 539 41 HOH HOH . O 5 HOH B 40 540 15 HOH HOH . O 5 HOH B 41 541 199 HOH HOH . O 5 HOH B 42 542 22 HOH HOH . O 5 HOH B 43 543 122 HOH HOH . O 5 HOH B 44 544 26 HOH HOH . O 5 HOH B 45 545 71 HOH HOH . O 5 HOH B 46 546 88 HOH HOH . O 5 HOH B 47 547 53 HOH HOH . O 5 HOH B 48 548 47 HOH HOH . O 5 HOH B 49 549 78 HOH HOH . O 5 HOH B 50 550 187 HOH HOH . O 5 HOH B 51 551 200 HOH HOH . O 5 HOH B 52 552 72 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . J 4 120.595 -25.825 143.205 1 49.41 ? C1 EDO 408 A 1 HETATM 2 O O1 EDO . . . J 4 120.999 -25.121 144.385 1 44.47 ? O1 EDO 408 A 1 HETATM 3 C C2 EDO . . . J 4 120.013 -27.186 143.595 1 50.51 ? C2 EDO 408 A 1 HETATM 4 O O2 EDO . . . J 4 118.693 -27.065 144.153 1 38.68 ? O2 EDO 408 A 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #