data_5BUR # _model_server_result.job_id MwF6xqN4iQX0ygSVCwkSgw _model_server_result.datetime_utc '2024-10-14 08:23:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5bur # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":504}' # _entry.id 5BUR # _exptl.entry_id 5BUR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5BUR _cell.length_a 121.835 _cell.length_b 121.835 _cell.length_c 97.801 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5BUR _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 H N N ? 5 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 G MG MG . A MG 505 1_555 H O2G ATP . A ATP 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc2 G MG MG . A MG 505 1_555 H O2B ATP . A ATP 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? metalc ? metalc3 G MG MG . A MG 505 1_555 N O HOH . A HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.758 ? metalc ? metalc4 G MG MG . A MG 505 1_555 N O HOH . A HOH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.946 ? metalc ? metalc5 G MG MG . A MG 505 1_555 N O HOH . A HOH 611 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.876 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 5BUR _atom_sites.fract_transf_matrix[1][1] 0.008208 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008208 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010225 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CL A 1 501 2 CL CL . D 2 CL A 1 502 4 CL CL . E 2 CL A 1 503 6 CL CL . F 3 GOL A 1 504 1 GOL GOL . G 4 MG A 1 505 499 MG MG . H 5 ATP A 1 506 500 ATP ATP . I 6 EDO A 1 507 501 EDO EDO . J 2 CL B 1 501 1 CL CL . K 2 CL B 1 502 3 CL CL . L 2 CL B 1 503 5 CL CL . M 5 ATP B 1 504 600 ATP ATP . N 7 HOH A 1 601 26 HOH HOH . N 7 HOH A 2 602 12 HOH HOH . N 7 HOH A 3 603 28 HOH HOH . N 7 HOH A 4 604 6 HOH HOH . N 7 HOH A 5 605 11 HOH HOH . N 7 HOH A 6 606 22 HOH HOH . N 7 HOH A 7 607 44 HOH HOH . N 7 HOH A 8 608 45 HOH HOH . N 7 HOH A 9 609 7 HOH HOH . N 7 HOH A 10 610 8 HOH HOH . N 7 HOH A 11 611 13 HOH HOH . N 7 HOH A 12 612 1 HOH HOH . N 7 HOH A 13 613 5 HOH HOH . N 7 HOH A 14 614 23 HOH HOH . N 7 HOH A 15 615 16 HOH HOH . N 7 HOH A 16 616 39 HOH HOH . N 7 HOH A 17 617 3 HOH HOH . N 7 HOH A 18 618 35 HOH HOH . N 7 HOH A 19 619 27 HOH HOH . N 7 HOH A 20 620 41 HOH HOH . N 7 HOH A 21 621 43 HOH HOH . N 7 HOH A 22 622 42 HOH HOH . N 7 HOH A 23 623 31 HOH HOH . N 7 HOH A 24 624 36 HOH HOH . N 7 HOH A 25 625 33 HOH HOH . N 7 HOH A 26 626 34 HOH HOH . N 7 HOH A 27 627 37 HOH HOH . N 7 HOH A 28 628 40 HOH HOH . N 7 HOH A 29 629 32 HOH HOH . O 7 HOH B 1 601 18 HOH HOH . O 7 HOH B 2 602 21 HOH HOH . O 7 HOH B 3 603 14 HOH HOH . O 7 HOH B 4 604 17 HOH HOH . O 7 HOH B 5 605 2 HOH HOH . O 7 HOH B 6 606 15 HOH HOH . O 7 HOH B 7 607 19 HOH HOH . O 7 HOH B 8 608 10 HOH HOH . O 7 HOH B 9 609 9 HOH HOH . O 7 HOH B 10 610 29 HOH HOH . O 7 HOH B 11 611 20 HOH HOH . O 7 HOH B 12 612 24 HOH HOH . O 7 HOH B 13 613 30 HOH HOH . O 7 HOH B 14 614 25 HOH HOH . O 7 HOH B 15 615 38 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . M 5 46.097 123.105 -24.122 1 122.14 ? PG ATP 504 B 1 HETATM 2 O O1G ATP . . . M 5 45.855 122.404 -25.413 1 118.77 ? O1G ATP 504 B 1 HETATM 3 O O2G ATP . . . M 5 46.296 124.578 -24.287 1 117.63 -1 O2G ATP 504 B 1 HETATM 4 O O3G ATP . . . M 5 47.128 122.441 -23.254 1 104.85 -1 O3G ATP 504 B 1 HETATM 5 P PB ATP . . . M 5 43.773 123.993 -22.66 1 122.06 ? PB ATP 504 B 1 HETATM 6 O O1B ATP . . . M 5 44.399 125.348 -22.772 1 115.58 ? O1B ATP 504 B 1 HETATM 7 O O2B ATP . . . M 5 42.369 123.786 -23.101 1 109.86 -1 O2B ATP 504 B 1 HETATM 8 O O3B ATP . . . M 5 44.699 122.889 -23.364 1 115.44 ? O3B ATP 504 B 1 HETATM 9 P PA ATP . . . M 5 43.839 124.519 -19.891 1 113.37 ? PA ATP 504 B 1 HETATM 10 O O1A ATP . . . M 5 44.763 125.622 -20.264 1 95.71 ? O1A ATP 504 B 1 HETATM 11 O O2A ATP . . . M 5 44.116 123.691 -18.684 1 96.78 -1 O2A ATP 504 B 1 HETATM 12 O O3A ATP . . . M 5 43.743 123.52 -21.135 1 117.62 ? O3A ATP 504 B 1 HETATM 13 O O5' ATP . . . M 5 42.361 125.1 -19.759 1 105.44 ? O5' ATP 504 B 1 HETATM 14 C C5' ATP . . . M 5 42.108 126.491 -19.892 1 99.45 ? C5' ATP 504 B 1 HETATM 15 C C4' ATP . . . M 5 41.506 126.791 -21.255 1 104.18 ? C4' ATP 504 B 1 HETATM 16 O O4' ATP . . . M 5 40.138 126.451 -21.223 1 109.51 ? O4' ATP 504 B 1 HETATM 17 C C3' ATP . . . M 5 41.574 128.247 -21.642 1 98.09 ? C3' ATP 504 B 1 HETATM 18 O O3' ATP . . . M 5 42.376 128.395 -22.799 1 90.79 ? O3' ATP 504 B 1 HETATM 19 C C2' ATP . . . M 5 40.192 128.64 -22.039 1 100.73 ? C2' ATP 504 B 1 HETATM 20 O O2' ATP . . . M 5 40.215 128.733 -23.458 1 97.72 ? O2' ATP 504 B 1 HETATM 21 C C1' ATP . . . M 5 39.291 127.52 -21.589 1 103.18 ? C1' ATP 504 B 1 HETATM 22 N N9 ATP . . . M 5 38.542 127.895 -20.373 1 106.16 ? N9 ATP 504 B 1 HETATM 23 C C8 ATP . . . M 5 38.934 127.641 -19.119 1 108.88 ? C8 ATP 504 B 1 HETATM 24 N N7 ATP . . . M 5 38.043 128.106 -18.218 1 111.17 ? N7 ATP 504 B 1 HETATM 25 C C5 ATP . . . M 5 37.05 128.672 -18.901 1 111.38 ? C5 ATP 504 B 1 HETATM 26 C C6 ATP . . . M 5 35.796 129.35 -18.554 1 112.44 ? C6 ATP 504 B 1 HETATM 27 N N6 ATP . . . M 5 35.43 129.507 -17.269 1 112.57 ? N6 ATP 504 B 1 HETATM 28 N N1 ATP . . . M 5 35.027 129.802 -19.551 1 113.88 ? N1 ATP 504 B 1 HETATM 29 C C2 ATP . . . M 5 35.384 129.636 -20.825 1 102.22 ? C2 ATP 504 B 1 HETATM 30 N N3 ATP . . . M 5 36.512 129.028 -21.209 1 107.63 ? N3 ATP 504 B 1 HETATM 31 C C4 ATP . . . M 5 37.377 128.527 -20.313 1 110.75 ? C4 ATP 504 B 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 55 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 31 #