data_5BUR
#
_model_server_result.job_id            3oraGu99Rnr2pz2dGPTcaA 
_model_server_result.datetime_utc      '2024-11-26 01:37:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5bur 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":506}' 
#
_entry.id    5BUR 
#
_exptl.entry_id    5BUR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5BUR 
_cell.length_a            121.835 
_cell.length_b            121.835 
_cell.length_c            97.801 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5BUR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        78 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 H N N 
? 5 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 G MG MG . A MG 505 1_555 H O2G ATP . A ATP 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? 
metalc ? metalc2 G MG MG . A MG 505 1_555 H O2B ATP . A ATP 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? 
metalc ? metalc3 G MG MG . A MG 505 1_555 N O HOH . A HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.758 ? 
metalc ? metalc4 G MG MG . A MG 505 1_555 N O HOH . A HOH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.946 ? 
metalc ? metalc5 G MG MG . A MG 505 1_555 N O HOH . A HOH 611 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.876 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 70 n n 
PG O2G ATP sing 71 n n 
PG O3G ATP sing 72 n n 
PG O3B ATP sing 73 n n 
O2G HOG2 ATP sing 74 n n 
O3G HOG3 ATP sing 75 n n 
PB O1B ATP doub 76 n n 
PB O2B ATP sing 77 n n 
PB O3B ATP sing 78 n n 
PB O3A ATP sing 79 n n 
O2B HOB2 ATP sing 80 n n 
PA O1A ATP doub 81 n n 
PA O2A ATP sing 82 n n 
PA O3A ATP sing 83 n n 
PA O5' ATP sing 84 n n 
O2A HOA2 ATP sing 85 n n 
O5' C5' ATP sing 86 n n 
C5' C4' ATP sing 87 n n 
C5' "H5'1" ATP sing 88 n n 
C5' "H5'2" ATP sing 89 n n 
C4' O4' ATP sing 90 n n 
C4' C3' ATP sing 91 n n 
C4' H4' ATP sing 92 n n 
O4' C1' ATP sing 93 n n 
C3' O3' ATP sing 94 n n 
C3' C2' ATP sing 95 n n 
C3' H3' ATP sing 96 n n 
O3' HO3' ATP sing 97 n n 
C2' O2' ATP sing 98 n n 
C2' C1' ATP sing 99 n n 
C2' H2' ATP sing 100 n n 
O2' HO2' ATP sing 101 n n 
C1' N9 ATP sing 102 n n 
C1' H1' ATP sing 103 n n 
N9 C8 ATP sing 104 n y 
N9 C4 ATP sing 105 n y 
C8 N7 ATP doub 106 n y 
C8 H8 ATP sing 107 n n 
N7 C5 ATP sing 108 n y 
C5 C6 ATP sing 109 n y 
C5 C4 ATP doub 110 n y 
C6 N6 ATP sing 111 n n 
C6 N1 ATP doub 112 n y 
N6 HN61 ATP sing 113 n n 
N6 HN62 ATP sing 114 n n 
N1 C2 ATP sing 115 n y 
C2 N3 ATP doub 116 n y 
C2 H2 ATP sing 117 n n 
N3 C4 ATP sing 118 n y 
#
_atom_sites.entry_id                     5BUR 
_atom_sites.fract_transf_matrix[1][1]    0.008208 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008208 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010225 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 CL A 1 501 2 CL CL . 
D 2 CL A 1 502 4 CL CL . 
E 2 CL A 1 503 6 CL CL . 
F 3 GOL A 1 504 1 GOL GOL . 
G 4 MG A 1 505 499 MG MG . 
H 5 ATP A 1 506 500 ATP ATP . 
I 6 EDO A 1 507 501 EDO EDO . 
J 2 CL B 1 501 1 CL CL . 
K 2 CL B 1 502 3 CL CL . 
L 2 CL B 1 503 5 CL CL . 
M 5 ATP B 1 504 600 ATP ATP . 
N 7 HOH A 1 601 26 HOH HOH . 
N 7 HOH A 2 602 12 HOH HOH . 
N 7 HOH A 3 603 28 HOH HOH . 
N 7 HOH A 4 604 6 HOH HOH . 
N 7 HOH A 5 605 11 HOH HOH . 
N 7 HOH A 6 606 22 HOH HOH . 
N 7 HOH A 7 607 44 HOH HOH . 
N 7 HOH A 8 608 45 HOH HOH . 
N 7 HOH A 9 609 7 HOH HOH . 
N 7 HOH A 10 610 8 HOH HOH . 
N 7 HOH A 11 611 13 HOH HOH . 
N 7 HOH A 12 612 1 HOH HOH . 
N 7 HOH A 13 613 5 HOH HOH . 
N 7 HOH A 14 614 23 HOH HOH . 
N 7 HOH A 15 615 16 HOH HOH . 
N 7 HOH A 16 616 39 HOH HOH . 
N 7 HOH A 17 617 3 HOH HOH . 
N 7 HOH A 18 618 35 HOH HOH . 
N 7 HOH A 19 619 27 HOH HOH . 
N 7 HOH A 20 620 41 HOH HOH . 
N 7 HOH A 21 621 43 HOH HOH . 
N 7 HOH A 22 622 42 HOH HOH . 
N 7 HOH A 23 623 31 HOH HOH . 
N 7 HOH A 24 624 36 HOH HOH . 
N 7 HOH A 25 625 33 HOH HOH . 
N 7 HOH A 26 626 34 HOH HOH . 
N 7 HOH A 27 627 37 HOH HOH . 
N 7 HOH A 28 628 40 HOH HOH . 
N 7 HOH A 29 629 32 HOH HOH . 
O 7 HOH B 1 601 18 HOH HOH . 
O 7 HOH B 2 602 21 HOH HOH . 
O 7 HOH B 3 603 14 HOH HOH . 
O 7 HOH B 4 604 17 HOH HOH . 
O 7 HOH B 5 605 2 HOH HOH . 
O 7 HOH B 6 606 15 HOH HOH . 
O 7 HOH B 7 607 19 HOH HOH . 
O 7 HOH B 8 608 10 HOH HOH . 
O 7 HOH B 9 609 9 HOH HOH . 
O 7 HOH B 10 610 29 HOH HOH . 
O 7 HOH B 11 611 20 HOH HOH . 
O 7 HOH B 12 612 24 HOH HOH . 
O 7 HOH B 13 613 30 HOH HOH . 
O 7 HOH B 14 614 25 HOH HOH . 
O 7 HOH B 15 615 38 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . H 5 67.981 159.579 9.854 1 75.33 ? PG ATP 506 A 1 
HETATM 2 O O1G ATP . . . H 5 68.881 160.171 10.832 1 68.4 ? O1G ATP 506 A 1 
HETATM 3 O O2G ATP . . . H 5 68.107 158.089 9.781 1 59.66 -1 O2G ATP 506 A 1 
HETATM 4 O O3G ATP . . . H 5 68.076 160.299 8.571 1 67.59 -1 O3G ATP 506 A 1 
HETATM 5 P PB ATP . . . H 5 65.405 158.975 10.869 1 69.13 ? PB ATP 506 A 1 
HETATM 6 O O1B ATP . . . H 5 65.32 159.287 12.291 1 72.48 ? O1B ATP 506 A 1 
HETATM 7 O O2B ATP . . . H 5 65.703 157.598 10.436 1 58.96 -1 O2B ATP 506 A 1 
HETATM 8 O O3B ATP . . . H 5 66.507 159.964 10.328 1 73.56 ? O3B ATP 506 A 1 
HETATM 9 P PA ATP . . . H 5 62.904 158.131 10.083 1 71.18 ? PA ATP 506 A 1 
HETATM 10 O O1A ATP . . . H 5 63.479 157.189 9.129 1 55.97 ? O1A ATP 506 A 1 
HETATM 11 O O2A ATP . . . H 5 61.573 158.647 9.817 1 73.72 -1 O2A ATP 506 A 1 
HETATM 12 O O3A ATP . . . H 5 63.969 159.309 10.275 1 65.95 ? O3A ATP 506 A 1 
HETATM 13 O O5' ATP . . . H 5 62.785 157.452 11.501 1 62.71 ? O5' ATP 506 A 1 
HETATM 14 C C5' ATP . . . H 5 62.757 156.051 11.738 1 59.53 ? C5' ATP 506 A 1 
HETATM 15 C C4' ATP . . . H 5 63.395 155.699 13.085 1 60.78 ? C4' ATP 506 A 1 
HETATM 16 O O4' ATP . . . H 5 62.449 155.74 14.135 1 64.21 ? O4' ATP 506 A 1 
HETATM 17 C C3' ATP . . . H 5 63.888 154.291 13.18 1 63.73 ? C3' ATP 506 A 1 
HETATM 18 O O3' ATP . . . H 5 65.231 154.227 12.807 1 66.19 ? O3' ATP 506 A 1 
HETATM 19 C C2' ATP . . . H 5 63.839 153.984 14.634 1 55.37 ? C2' ATP 506 A 1 
HETATM 20 O O2' ATP . . . H 5 65.048 154.435 15.165 1 55.81 ? O2' ATP 506 A 1 
HETATM 21 C C1' ATP . . . H 5 62.748 154.83 15.177 1 54.98 ? C1' ATP 506 A 1 
HETATM 22 N N9 ATP . . . H 5 61.576 153.979 15.401 1 55.02 ? N9 ATP 506 A 1 
HETATM 23 C C8 ATP . . . H 5 60.612 153.8 14.52 1 58.81 ? C8 ATP 506 A 1 
HETATM 24 N N7 ATP . . . H 5 59.677 152.975 14.98 1 56.08 ? N7 ATP 506 A 1 
HETATM 25 C C5 ATP . . . H 5 60.036 152.603 16.186 1 51.72 ? C5 ATP 506 A 1 
HETATM 26 C C6 ATP . . . H 5 59.473 151.736 17.203 1 56.55 ? C6 ATP 506 A 1 
HETATM 27 N N6 ATP . . . H 5 58.312 151.088 17.026 1 53.66 ? N6 ATP 506 A 1 
HETATM 28 N N1 ATP . . . H 5 60.149 151.606 18.322 1 56.55 ? N1 ATP 506 A 1 
HETATM 29 C C2 ATP . . . H 5 61.29 152.231 18.524 1 46.33 ? C2 ATP 506 A 1 
HETATM 30 N N3 ATP . . . H 5 61.848 153.026 17.638 1 53.75 ? N3 ATP 506 A 1 
HETATM 31 C C4 ATP . . . H 5 61.283 153.259 16.462 1 53.2 ? C4 ATP 506 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           291 
_model_server_stats.encode_time_ms          20 
_model_server_stats.element_count           31 
#