data_5BUR # _model_server_result.job_id bcZwXYf1q5UaN01w8bkhNQ _model_server_result.datetime_utc '2024-11-29 13:50:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5bur # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":507}' # _entry.id 5BUR # _exptl.entry_id 5BUR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5BUR _cell.length_a 121.835 _cell.length_b 121.835 _cell.length_c 97.801 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5BUR _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 G MG MG . A MG 505 1_555 H O2G ATP . A ATP 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc2 G MG MG . A MG 505 1_555 H O2B ATP . A ATP 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? metalc ? metalc3 G MG MG . A MG 505 1_555 N O HOH . A HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.758 ? metalc ? metalc4 G MG MG . A MG 505 1_555 N O HOH . A HOH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.946 ? metalc ? metalc5 G MG MG . A MG 505 1_555 N O HOH . A HOH 611 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.876 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 132 n n C1 C2 EDO sing 133 n n C1 H11 EDO sing 134 n n C1 H12 EDO sing 135 n n O1 HO1 EDO sing 136 n n C2 O2 EDO sing 137 n n C2 H21 EDO sing 138 n n C2 H22 EDO sing 139 n n O2 HO2 EDO sing 140 n n # _atom_sites.entry_id 5BUR _atom_sites.fract_transf_matrix[1][1] 0.008208 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008208 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010225 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CL A 1 501 2 CL CL . D 2 CL A 1 502 4 CL CL . E 2 CL A 1 503 6 CL CL . F 3 GOL A 1 504 1 GOL GOL . G 4 MG A 1 505 499 MG MG . H 5 ATP A 1 506 500 ATP ATP . I 6 EDO A 1 507 501 EDO EDO . J 2 CL B 1 501 1 CL CL . K 2 CL B 1 502 3 CL CL . L 2 CL B 1 503 5 CL CL . M 5 ATP B 1 504 600 ATP ATP . N 7 HOH A 1 601 26 HOH HOH . N 7 HOH A 2 602 12 HOH HOH . N 7 HOH A 3 603 28 HOH HOH . N 7 HOH A 4 604 6 HOH HOH . N 7 HOH A 5 605 11 HOH HOH . N 7 HOH A 6 606 22 HOH HOH . N 7 HOH A 7 607 44 HOH HOH . N 7 HOH A 8 608 45 HOH HOH . N 7 HOH A 9 609 7 HOH HOH . N 7 HOH A 10 610 8 HOH HOH . N 7 HOH A 11 611 13 HOH HOH . N 7 HOH A 12 612 1 HOH HOH . N 7 HOH A 13 613 5 HOH HOH . N 7 HOH A 14 614 23 HOH HOH . N 7 HOH A 15 615 16 HOH HOH . N 7 HOH A 16 616 39 HOH HOH . N 7 HOH A 17 617 3 HOH HOH . N 7 HOH A 18 618 35 HOH HOH . N 7 HOH A 19 619 27 HOH HOH . N 7 HOH A 20 620 41 HOH HOH . N 7 HOH A 21 621 43 HOH HOH . N 7 HOH A 22 622 42 HOH HOH . N 7 HOH A 23 623 31 HOH HOH . N 7 HOH A 24 624 36 HOH HOH . N 7 HOH A 25 625 33 HOH HOH . N 7 HOH A 26 626 34 HOH HOH . N 7 HOH A 27 627 37 HOH HOH . N 7 HOH A 28 628 40 HOH HOH . N 7 HOH A 29 629 32 HOH HOH . O 7 HOH B 1 601 18 HOH HOH . O 7 HOH B 2 602 21 HOH HOH . O 7 HOH B 3 603 14 HOH HOH . O 7 HOH B 4 604 17 HOH HOH . O 7 HOH B 5 605 2 HOH HOH . O 7 HOH B 6 606 15 HOH HOH . O 7 HOH B 7 607 19 HOH HOH . O 7 HOH B 8 608 10 HOH HOH . O 7 HOH B 9 609 9 HOH HOH . O 7 HOH B 10 610 29 HOH HOH . O 7 HOH B 11 611 20 HOH HOH . O 7 HOH B 12 612 24 HOH HOH . O 7 HOH B 13 613 30 HOH HOH . O 7 HOH B 14 614 25 HOH HOH . O 7 HOH B 15 615 38 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . I 6 57.151 155.805 9.8 1 70.39 ? C1 EDO 507 A 1 HETATM 2 O O1 EDO . . . I 6 56.933 154.489 9.327 1 58.2 ? O1 EDO 507 A 1 HETATM 3 C C2 EDO . . . I 6 58.333 155.823 10.759 1 79.85 ? C2 EDO 507 A 1 HETATM 4 O O2 EDO . . . I 6 57.922 156.153 12.078 1 70.41 ? O2 EDO 507 A 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 341 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #