data_5BUS # _model_server_result.job_id -YLcGEqT6aXCPOMifKGgLw _model_server_result.datetime_utc '2024-12-25 18:30:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5bus # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":503}' # _entry.id 5BUS # _exptl.entry_id 5BUS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5BUS _cell.length_a 121.811 _cell.length_b 121.811 _cell.length_c 98.013 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5BUS _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 H N N # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P AMP doub 13 n n P O2P AMP sing 14 n n P O3P AMP sing 15 n n P O5' AMP sing 16 n n O2P HOP2 AMP sing 17 n n O3P HOP3 AMP sing 18 n n O5' C5' AMP sing 19 n n C5' C4' AMP sing 20 n n C5' "H5'1" AMP sing 21 n n C5' "H5'2" AMP sing 22 n n C4' O4' AMP sing 23 n n C4' C3' AMP sing 24 n n C4' H4' AMP sing 25 n n O4' C1' AMP sing 26 n n C3' O3' AMP sing 27 n n C3' C2' AMP sing 28 n n C3' H3' AMP sing 29 n n O3' HO3' AMP sing 30 n n C2' O2' AMP sing 31 n n C2' C1' AMP sing 32 n n C2' H2' AMP sing 33 n n O2' HO2' AMP sing 34 n n C1' N9 AMP sing 35 n n C1' H1' AMP sing 36 n n N9 C8 AMP sing 37 n y N9 C4 AMP sing 38 n y C8 N7 AMP doub 39 n y C8 H8 AMP sing 40 n n N7 C5 AMP sing 41 n y C5 C6 AMP sing 42 n y C5 C4 AMP doub 43 n y C6 N6 AMP sing 44 n n C6 N1 AMP doub 45 n y N6 HN61 AMP sing 46 n n N6 HN62 AMP sing 47 n n N1 C2 AMP sing 48 n y C2 N3 AMP doub 49 n y C2 H2 AMP sing 50 n n N3 C4 AMP sing 51 n y # _atom_sites.entry_id 5BUS _atom_sites.fract_transf_matrix[1][1] 0.008209 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008209 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010203 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CL A 1 501 4 CL CL . D 2 CL A 1 502 5 CL CL . E 3 AMP A 1 503 500 AMP AMP . F 2 CL B 1 501 2 CL CL . G 2 CL B 1 502 3 CL CL . H 3 AMP B 1 503 501 AMP AMP . I 4 HOH A 1 601 55 HOH HOH . I 4 HOH A 2 602 43 HOH HOH . I 4 HOH A 3 603 1 HOH HOH . I 4 HOH A 4 604 47 HOH HOH . I 4 HOH A 5 605 8 HOH HOH . I 4 HOH A 6 606 49 HOH HOH . I 4 HOH A 7 607 25 HOH HOH . I 4 HOH A 8 608 10 HOH HOH . I 4 HOH A 9 609 31 HOH HOH . I 4 HOH A 10 610 19 HOH HOH . I 4 HOH A 11 611 9 HOH HOH . I 4 HOH A 12 612 21 HOH HOH . I 4 HOH A 13 613 32 HOH HOH . I 4 HOH A 14 614 40 HOH HOH . I 4 HOH A 15 615 15 HOH HOH . I 4 HOH A 16 616 3 HOH HOH . I 4 HOH A 17 617 39 HOH HOH . I 4 HOH A 18 618 44 HOH HOH . I 4 HOH A 19 619 36 HOH HOH . I 4 HOH A 20 620 33 HOH HOH . I 4 HOH A 21 621 48 HOH HOH . I 4 HOH A 22 622 61 HOH HOH . I 4 HOH A 23 623 5 HOH HOH . I 4 HOH A 24 624 28 HOH HOH . I 4 HOH A 25 625 27 HOH HOH . I 4 HOH A 26 626 51 HOH HOH . I 4 HOH A 27 627 24 HOH HOH . I 4 HOH A 28 628 16 HOH HOH . I 4 HOH A 29 629 23 HOH HOH . I 4 HOH A 30 630 11 HOH HOH . I 4 HOH A 31 631 4 HOH HOH . I 4 HOH A 32 632 50 HOH HOH . I 4 HOH A 33 633 22 HOH HOH . I 4 HOH A 34 634 53 HOH HOH . I 4 HOH A 35 635 37 HOH HOH . I 4 HOH A 36 636 58 HOH HOH . I 4 HOH A 37 637 62 HOH HOH . I 4 HOH A 38 638 35 HOH HOH . I 4 HOH A 39 639 45 HOH HOH . I 4 HOH A 40 640 12 HOH HOH . I 4 HOH A 41 641 52 HOH HOH . I 4 HOH A 42 642 29 HOH HOH . I 4 HOH A 43 643 38 HOH HOH . I 4 HOH A 44 644 60 HOH HOH . J 4 HOH B 1 601 2 HOH HOH . J 4 HOH B 2 602 54 HOH HOH . J 4 HOH B 3 603 41 HOH HOH . J 4 HOH B 4 604 56 HOH HOH . J 4 HOH B 5 605 42 HOH HOH . J 4 HOH B 6 606 59 HOH HOH . J 4 HOH B 7 607 6 HOH HOH . J 4 HOH B 8 608 14 HOH HOH . J 4 HOH B 9 609 30 HOH HOH . J 4 HOH B 10 610 20 HOH HOH . J 4 HOH B 11 611 57 HOH HOH . J 4 HOH B 12 612 46 HOH HOH . J 4 HOH B 13 613 17 HOH HOH . J 4 HOH B 14 614 34 HOH HOH . J 4 HOH B 15 615 26 HOH HOH . J 4 HOH B 16 616 13 HOH HOH . J 4 HOH B 17 617 7 HOH HOH . J 4 HOH B 18 618 18 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P AMP . . . H 3 124.295 -42.601 -20.57 1 109.74 ? P AMP 503 B 1 HETATM 2 O O1P AMP . . . H 3 124.539 -43.897 -21.246 1 102.19 ? O1P AMP 503 B 1 HETATM 3 O O2P AMP . . . H 3 122.87 -42.204 -20.467 1 115.72 -1 O2P AMP 503 B 1 HETATM 4 O O3P AMP . . . H 3 125.022 -42.416 -19.294 1 113.7 -1 O3P AMP 503 B 1 HETATM 5 O O5' AMP . . . H 3 124.968 -41.544 -21.547 1 87.03 ? O5' AMP 503 B 1 HETATM 6 C C5' AMP . . . H 3 126.129 -41.939 -22.244 1 90.6 ? C5' AMP 503 B 1 HETATM 7 C C4' AMP . . . H 3 126.467 -40.942 -23.329 1 92.25 ? C4' AMP 503 B 1 HETATM 8 O O4' AMP . . . H 3 126.291 -39.628 -22.848 1 94.86 ? O4' AMP 503 B 1 HETATM 9 C C3' AMP . . . H 3 127.919 -40.972 -23.724 1 89.88 ? C3' AMP 503 B 1 HETATM 10 O O3' AMP . . . H 3 128.18 -41.846 -24.798 1 83.62 ? O3' AMP 503 B 1 HETATM 11 C C2' AMP . . . H 3 128.163 -39.6 -24.253 1 94.6 ? C2' AMP 503 B 1 HETATM 12 O O2' AMP . . . H 3 128.066 -39.653 -25.671 1 98.69 ? O2' AMP 503 B 1 HETATM 13 C C1' AMP . . . H 3 127.09 -38.757 -23.626 1 97.04 ? C1' AMP 503 B 1 HETATM 14 N N9 AMP . . . H 3 127.816 -37.882 -22.711 1 105.37 ? N9 AMP 503 B 1 HETATM 15 C C8 AMP . . . H 3 127.884 -38.005 -21.385 1 105.99 ? C8 AMP 503 B 1 HETATM 16 N N7 AMP . . . H 3 128.657 -37.041 -20.839 1 102.54 ? N7 AMP 503 B 1 HETATM 17 C C5 AMP . . . H 3 129.099 -36.288 -21.842 1 110.45 ? C5 AMP 503 B 1 HETATM 18 C C6 AMP . . . H 3 129.953 -35.102 -21.976 1 116.48 ? C6 AMP 503 B 1 HETATM 19 N N6 AMP . . . H 3 130.501 -34.527 -20.887 1 112.78 ? N6 AMP 503 B 1 HETATM 20 N N1 AMP . . . H 3 130.169 -34.62 -23.212 1 118.01 ? N1 AMP 503 B 1 HETATM 21 C C2 AMP . . . H 3 129.624 -35.195 -24.288 1 109.7 ? C2 AMP 503 B 1 HETATM 22 N N3 AMP . . . H 3 128.839 -36.27 -24.239 1 106.4 ? N3 AMP 503 B 1 HETATM 23 C C4 AMP . . . H 3 128.548 -36.849 -23.069 1 109.35 ? C4 AMP 503 B 1 # _model_server_stats.io_time_ms 42 _model_server_stats.parse_time_ms 37 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 23 #