data_5BV5 # _model_server_result.job_id C9SfWOwybpIYoEToJyjw8Q _model_server_result.datetime_utc '2024-11-28 11:52:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5bv5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":501}' # _entry.id 5BV5 # _exptl.entry_id 5BV5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 144.173 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 4-PHENYL-1H-IMIDAZOLE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.18 _cell.angle_gamma 90 _cell.entry_id 5BV5 _cell.length_a 64.486 _cell.length_b 137.871 _cell.length_c 91.779 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5BV5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 PISA tetrameric 4 software_defined_assembly 5 PISA tetrameric 4 software_defined_assembly 6 PISA dimeric 2 software_defined_assembly 7 PISA dimeric 2 software_defined_assembly 8 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,N 1 1 B,G,H,I,O 2 1 C,J,K,P 3 1 D,L,M,Q 4 1 B,C,G,H,I,J,K,O,P 5 1 A,D,E,F,L,M,N,Q 5 2 B,G,H,I,O 6 1 D,L,M,Q 6 2 A,E,F,N 6 4 C,J,K,P 6 5 A,E,F,N 7 1 C,J,K,P 7 3 B,G,H,I,O 8 1 D,L,M,Q 8 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 1_454 x-1,y,z-1 1 0 0 0 1 0 0 0 1 -46.690793 0 -90.0373 3 'crystal symmetry operation' 1_656 x+1,y,z+1 1 0 0 0 1 0 0 0 1 46.690793 0 90.0373 4 'crystal symmetry operation' 2_444 -x-1,y-1/2,-z-1 -1 0 0 0 1 0 0 0 -1 -46.690793 -68.9355 -90.0373 5 'crystal symmetry operation' 2_343 -x-2,y-1/2,-z-2 -1 0 0 0 1 0 0 0 -1 -93.381587 -68.9355 -180.074601 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 I N N ? 4 K N N ? 4 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 317 A HIS 317 1_555 F FE HEM . A HEM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.862 ? metalc ? metalc2 F FE HEM . A HEM 602 1_555 N O HOH . A HOH 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? metalc ? metalc3 B NE2 HIS 317 B HIS 317 1_555 H FE HEM . B HEM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.873 ? metalc ? metalc4 H FE HEM . B HEM 602 1_555 I N3 PIM . B PIM 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.861 ? metalc ? metalc5 C NE2 HIS 317 D HIS 317 1_555 J FE HEM . D HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.863 ? metalc ? metalc6 J FE HEM . D HEM 500 1_555 K N3 PIM . D PIM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.867 ? metalc ? metalc7 D NE2 HIS 317 C HIS 317 1_555 L FE HEM . C HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.876 ? metalc ? metalc8 L FE HEM . C HEM 500 1_555 M N3 PIM . C PIM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.86 ? # _chem_comp.formula 'C9 H8 N2' _chem_comp.formula_weight 144.173 _chem_comp.id PIM _chem_comp.mon_nstd_flag . _chem_comp.name 4-PHENYL-1H-IMIDAZOLE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 PIM sing 329 n y N1 C5 PIM sing 330 n y N1 HN1 PIM sing 331 n n C2 N3 PIM doub 332 n y C2 H2 PIM sing 333 n n N3 C4 PIM sing 334 n y C4 C5 PIM doub 335 n y C4 H4 PIM sing 336 n n C5 C6 PIM sing 337 n y C6 C7 PIM doub 338 n y C6 C11 PIM sing 339 n y C7 C8 PIM sing 340 n y C7 H7 PIM sing 341 n n C8 C9 PIM doub 342 n y C8 H8 PIM sing 343 n n C9 C10 PIM sing 344 n y C9 H9 PIM sing 345 n n C10 C11 PIM doub 346 n y C10 H10 PIM sing 347 n n C11 H11 PIM sing 348 n n # _atom_sites.entry_id 5BV5 _atom_sites.fract_transf_matrix[1][1] 0.015507 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003064 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007253 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011106 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 PO4 A 1 601 2 PO4 PO4 . F 3 HEM A 1 602 500 HEM HEM . G 2 PO4 B 1 601 1 PO4 PO4 . H 3 HEM B 1 602 500 HEM HEM . I 4 PIM B 1 603 501 PIM PIM . J 3 HEM D 1 500 500 HEM HEM . K 4 PIM D 1 501 501 PIM PIM . L 3 HEM C 1 500 500 HEM HEM . M 4 PIM C 1 501 501 PIM PIM . N 5 HOH A 1 701 9 HOH HOH . N 5 HOH A 2 702 1 HOH HOH . O 5 HOH B 1 701 4 HOH HOH . O 5 HOH B 2 702 11 HOH HOH . O 5 HOH B 3 703 5 HOH HOH . P 5 HOH D 1 601 10 HOH HOH . P 5 HOH D 2 602 7 HOH HOH . P 5 HOH D 3 603 2 HOH HOH . Q 5 HOH C 1 601 3 HOH HOH . Q 5 HOH C 2 602 8 HOH HOH . Q 5 HOH C 3 603 6 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 PIM . . . M 4 -9.697 -55.626 3.886 1 51.54 ? N1 PIM 501 C 1 HETATM 2 C C2 PIM . . . M 4 -10.114 -56.899 4.086 1 51.26 ? C2 PIM 501 C 1 HETATM 3 N N3 PIM . . . M 4 -9.388 -57.738 3.307 1 51.58 ? N3 PIM 501 C 1 HETATM 4 C C4 PIM . . . M 4 -8.501 -56.994 2.609 1 51.29 ? C4 PIM 501 C 1 HETATM 5 C C5 PIM . . . M 4 -8.712 -55.686 2.984 1 51.23 ? C5 PIM 501 C 1 HETATM 6 C C6 PIM . . . M 4 -8.05 -54.416 2.56 1 52.12 ? C6 PIM 501 C 1 HETATM 7 C C7 PIM . . . M 4 -7.652 -54.281 1.23 1 51.75 ? C7 PIM 501 C 1 HETATM 8 C C8 PIM . . . M 4 -7.022 -53.117 0.799 1 51.39 ? C8 PIM 501 C 1 HETATM 9 C C9 PIM . . . M 4 -6.784 -52.085 1.703 1 51.93 ? C9 PIM 501 C 1 HETATM 10 C C10 PIM . . . M 4 -7.175 -52.217 3.034 1 51.6 ? C10 PIM 501 C 1 HETATM 11 C C11 PIM . . . M 4 -7.804 -53.384 3.465 1 51.93 ? C11 PIM 501 C 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 11 #