data_5BV6 # _model_server_result.job_id m_L85SGM7b2izwjpA-lYeg _model_server_result.datetime_utc '2024-11-08 19:44:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5bv6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":504}' # _entry.id 5BV6 # _exptl.entry_id 5BV6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5BV6 _cell.length_a 40.344 _cell.length_b 50.479 _cell.length_c 69.167 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5BV6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 98 A ASP 364 1_555 C CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? metalc ? metalc2 C CA CA . A CA 502 1_555 G O HOH . A HOH 610 3_654 ? ? ? ? ? ? ? ? ? ? ? ? 2.534 ? metalc ? metalc3 C CA CA . A CA 502 1_555 G O HOH . A HOH 617 3_654 ? ? ? ? ? ? ? ? ? ? ? ? 2.557 ? metalc ? metalc4 C CA CA . A CA 502 1_555 G O HOH . A HOH 635 3_654 ? ? ? ? ? ? ? ? ? ? ? ? 2.529 ? metalc ? metalc5 C CA CA . A CA 502 1_555 G O HOH . A HOH 691 3_654 ? ? ? ? ? ? ? ? ? ? ? ? 2.538 ? metalc ? metalc6 C CA CA . A CA 502 1_555 G O HOH . A HOH 695 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.54 ? metalc ? metalc7 C CA CA . A CA 502 1_555 G O HOH . A HOH 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.509 ? metalc ? metalc8 E CA CA . A CA 504 1_555 G O HOH . A HOH 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.034 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5BV6 _atom_sites.fract_transf_matrix[1][1] 0.024787 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01981 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014458 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 35G A 1 501 419 35G PCG . C 3 CA A 1 502 420 CA CA . D 4 ACT A 1 503 421 ACT ACT . E 3 CA A 1 504 422 CA CA . F 5 NA A 1 505 423 NA NA . G 6 HOH A 1 601 515 HOH HOH . G 6 HOH A 2 602 479 HOH HOH . G 6 HOH A 3 603 427 HOH HOH . G 6 HOH A 4 604 528 HOH HOH . G 6 HOH A 5 605 513 HOH HOH . G 6 HOH A 6 606 458 HOH HOH . G 6 HOH A 7 607 518 HOH HOH . G 6 HOH A 8 608 470 HOH HOH . G 6 HOH A 9 609 465 HOH HOH . G 6 HOH A 10 610 430 HOH HOH . G 6 HOH A 11 611 519 HOH HOH . G 6 HOH A 12 612 496 HOH HOH . G 6 HOH A 13 613 511 HOH HOH . G 6 HOH A 14 614 480 HOH HOH . G 6 HOH A 15 615 482 HOH HOH . G 6 HOH A 16 616 450 HOH HOH . G 6 HOH A 17 617 426 HOH HOH . G 6 HOH A 18 618 453 HOH HOH . G 6 HOH A 19 619 521 HOH HOH . G 6 HOH A 20 620 448 HOH HOH . G 6 HOH A 21 621 425 HOH HOH . G 6 HOH A 22 622 451 HOH HOH . G 6 HOH A 23 623 447 HOH HOH . G 6 HOH A 24 624 506 HOH HOH . G 6 HOH A 25 625 504 HOH HOH . G 6 HOH A 26 626 436 HOH HOH . G 6 HOH A 27 627 494 HOH HOH . G 6 HOH A 28 628 452 HOH HOH . G 6 HOH A 29 629 435 HOH HOH . G 6 HOH A 30 630 505 HOH HOH . G 6 HOH A 31 631 472 HOH HOH . G 6 HOH A 32 632 501 HOH HOH . G 6 HOH A 33 633 461 HOH HOH . G 6 HOH A 34 634 503 HOH HOH . G 6 HOH A 35 635 428 HOH HOH . G 6 HOH A 36 636 424 HOH HOH . G 6 HOH A 37 637 433 HOH HOH . G 6 HOH A 38 638 460 HOH HOH . G 6 HOH A 39 639 456 HOH HOH . G 6 HOH A 40 640 463 HOH HOH . G 6 HOH A 41 641 524 HOH HOH . G 6 HOH A 42 642 498 HOH HOH . G 6 HOH A 43 643 429 HOH HOH . G 6 HOH A 44 644 446 HOH HOH . G 6 HOH A 45 645 431 HOH HOH . G 6 HOH A 46 646 455 HOH HOH . G 6 HOH A 47 647 475 HOH HOH . G 6 HOH A 48 648 437 HOH HOH . G 6 HOH A 49 649 454 HOH HOH . G 6 HOH A 50 650 464 HOH HOH . G 6 HOH A 51 651 468 HOH HOH . G 6 HOH A 52 652 473 HOH HOH . G 6 HOH A 53 653 488 HOH HOH . G 6 HOH A 54 654 467 HOH HOH . G 6 HOH A 55 655 512 HOH HOH . G 6 HOH A 56 656 484 HOH HOH . G 6 HOH A 57 657 432 HOH HOH . G 6 HOH A 58 658 441 HOH HOH . G 6 HOH A 59 659 502 HOH HOH . G 6 HOH A 60 660 516 HOH HOH . G 6 HOH A 61 661 485 HOH HOH . G 6 HOH A 62 662 478 HOH HOH . G 6 HOH A 63 663 439 HOH HOH . G 6 HOH A 64 664 493 HOH HOH . G 6 HOH A 65 665 520 HOH HOH . G 6 HOH A 66 666 444 HOH HOH . G 6 HOH A 67 667 526 HOH HOH . G 6 HOH A 68 668 490 HOH HOH . G 6 HOH A 69 669 499 HOH HOH . G 6 HOH A 70 670 442 HOH HOH . G 6 HOH A 71 671 500 HOH HOH . G 6 HOH A 72 672 474 HOH HOH . G 6 HOH A 73 673 507 HOH HOH . G 6 HOH A 74 674 438 HOH HOH . G 6 HOH A 75 675 469 HOH HOH . G 6 HOH A 76 676 517 HOH HOH . G 6 HOH A 77 677 466 HOH HOH . G 6 HOH A 78 678 443 HOH HOH . G 6 HOH A 79 679 476 HOH HOH . G 6 HOH A 80 680 457 HOH HOH . G 6 HOH A 81 681 509 HOH HOH . G 6 HOH A 82 682 514 HOH HOH . G 6 HOH A 83 683 525 HOH HOH . G 6 HOH A 84 684 445 HOH HOH . G 6 HOH A 85 685 489 HOH HOH . G 6 HOH A 86 686 481 HOH HOH . G 6 HOH A 87 687 522 HOH HOH . G 6 HOH A 88 688 527 HOH HOH . G 6 HOH A 89 689 459 HOH HOH . G 6 HOH A 90 690 449 HOH HOH . G 6 HOH A 91 691 434 HOH HOH . G 6 HOH A 92 692 486 HOH HOH . G 6 HOH A 93 693 491 HOH HOH . G 6 HOH A 94 694 483 HOH HOH . G 6 HOH A 95 695 440 HOH HOH . G 6 HOH A 96 696 495 HOH HOH . G 6 HOH A 97 697 523 HOH HOH . G 6 HOH A 98 698 487 HOH HOH . G 6 HOH A 99 699 510 HOH HOH . G 6 HOH A 100 700 477 HOH HOH . G 6 HOH A 101 701 497 HOH HOH . G 6 HOH A 102 702 508 HOH HOH . G 6 HOH A 103 703 492 HOH HOH . G 6 HOH A 104 704 462 HOH HOH . G 6 HOH A 105 705 471 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x 6.452 _atom_site.Cartn_y -15.492 _atom_site.Cartn_z -14.096 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 64.6 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 504 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 1 #