data_5BVK # _model_server_result.job_id xV65vLDE-fV0TV_7Ckk3uA _model_server_result.datetime_utc '2024-11-24 03:52:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5bvk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1001}' # _entry.id 5BVK # _exptl.entry_id 5BVK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 126.904 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'IODIDE ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5BVK _cell.length_a 62.026 _cell.length_b 71.505 _cell.length_c 76.682 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5BVK _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N # _chem_comp.formula 'I -1' _chem_comp.formula_weight 126.904 _chem_comp.id IOD _chem_comp.mon_nstd_flag . _chem_comp.name 'IODIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5BVK _atom_sites.fract_transf_matrix[1][1] 0.016122 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013985 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013041 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IOD A 1 1001 1 IOD IOD . C 2 IOD A 1 1002 2 IOD IOD . D 2 IOD A 1 1003 3 IOD IOD . E 2 IOD A 1 1004 5 IOD IOD . F 2 IOD A 1 1005 6 IOD IOD . G 2 IOD A 1 1006 156 IOD IOD . H 3 4VC A 1 1007 1 4VC L01 . I 4 HOH A 1 1101 165 HOH HOH . I 4 HOH A 2 1102 81 HOH HOH . I 4 HOH A 3 1103 16 HOH HOH . I 4 HOH A 4 1104 58 HOH HOH . I 4 HOH A 5 1105 20 HOH HOH . I 4 HOH A 6 1106 38 HOH HOH . I 4 HOH A 7 1107 57 HOH HOH . I 4 HOH A 8 1108 141 HOH HOH . I 4 HOH A 9 1109 74 HOH HOH . I 4 HOH A 10 1110 5 HOH HOH . I 4 HOH A 11 1111 49 HOH HOH . I 4 HOH A 12 1112 13 HOH HOH . I 4 HOH A 13 1113 4 HOH HOH . I 4 HOH A 14 1114 9 HOH HOH . I 4 HOH A 15 1115 7 HOH HOH . I 4 HOH A 16 1116 52 HOH HOH . I 4 HOH A 17 1117 36 HOH HOH . I 4 HOH A 18 1118 152 HOH HOH . I 4 HOH A 19 1119 25 HOH HOH . I 4 HOH A 20 1120 132 HOH HOH . I 4 HOH A 21 1121 155 HOH HOH . I 4 HOH A 22 1122 161 HOH HOH . I 4 HOH A 23 1123 40 HOH HOH . I 4 HOH A 24 1124 59 HOH HOH . I 4 HOH A 25 1125 164 HOH HOH . I 4 HOH A 26 1126 43 HOH HOH . I 4 HOH A 27 1127 46 HOH HOH . I 4 HOH A 28 1128 23 HOH HOH . I 4 HOH A 29 1129 76 HOH HOH . I 4 HOH A 30 1130 61 HOH HOH . I 4 HOH A 31 1131 91 HOH HOH . I 4 HOH A 32 1132 54 HOH HOH . I 4 HOH A 33 1133 128 HOH HOH . I 4 HOH A 34 1134 127 HOH HOH . I 4 HOH A 35 1135 83 HOH HOH . I 4 HOH A 36 1136 126 HOH HOH . I 4 HOH A 37 1137 22 HOH HOH . I 4 HOH A 38 1138 160 HOH HOH . I 4 HOH A 39 1139 89 HOH HOH . I 4 HOH A 40 1140 10 HOH HOH . I 4 HOH A 41 1141 39 HOH HOH . I 4 HOH A 42 1142 90 HOH HOH . I 4 HOH A 43 1143 8 HOH HOH . I 4 HOH A 44 1144 64 HOH HOH . I 4 HOH A 45 1145 157 HOH HOH . I 4 HOH A 46 1146 15 HOH HOH . I 4 HOH A 47 1147 12 HOH HOH . I 4 HOH A 48 1148 37 HOH HOH . I 4 HOH A 49 1149 162 HOH HOH . I 4 HOH A 50 1150 131 HOH HOH . I 4 HOH A 51 1151 119 HOH HOH . I 4 HOH A 52 1152 55 HOH HOH . I 4 HOH A 53 1153 33 HOH HOH . I 4 HOH A 54 1154 92 HOH HOH . I 4 HOH A 55 1155 21 HOH HOH . I 4 HOH A 56 1156 129 HOH HOH . I 4 HOH A 57 1157 113 HOH HOH . I 4 HOH A 58 1158 27 HOH HOH . I 4 HOH A 59 1159 108 HOH HOH . I 4 HOH A 60 1160 32 HOH HOH . I 4 HOH A 61 1161 149 HOH HOH . I 4 HOH A 62 1162 63 HOH HOH . I 4 HOH A 63 1163 145 HOH HOH . I 4 HOH A 64 1164 45 HOH HOH . I 4 HOH A 65 1165 79 HOH HOH . I 4 HOH A 66 1166 115 HOH HOH . I 4 HOH A 67 1167 158 HOH HOH . I 4 HOH A 68 1168 77 HOH HOH . I 4 HOH A 69 1169 116 HOH HOH . I 4 HOH A 70 1170 53 HOH HOH . I 4 HOH A 71 1171 44 HOH HOH . I 4 HOH A 72 1172 2 HOH HOH . I 4 HOH A 73 1173 1 HOH HOH . I 4 HOH A 74 1174 75 HOH HOH . I 4 HOH A 75 1175 6 HOH HOH . I 4 HOH A 76 1176 95 HOH HOH . I 4 HOH A 77 1177 67 HOH HOH . I 4 HOH A 78 1178 117 HOH HOH . I 4 HOH A 79 1179 34 HOH HOH . I 4 HOH A 80 1180 48 HOH HOH . I 4 HOH A 81 1181 17 HOH HOH . I 4 HOH A 82 1182 114 HOH HOH . I 4 HOH A 83 1183 3 HOH HOH . I 4 HOH A 84 1184 106 HOH HOH . I 4 HOH A 85 1185 18 HOH HOH . I 4 HOH A 86 1186 134 HOH HOH . I 4 HOH A 87 1187 19 HOH HOH . I 4 HOH A 88 1188 66 HOH HOH . I 4 HOH A 89 1189 47 HOH HOH . I 4 HOH A 90 1190 86 HOH HOH . I 4 HOH A 91 1191 159 HOH HOH . I 4 HOH A 92 1192 35 HOH HOH . I 4 HOH A 93 1193 133 HOH HOH . I 4 HOH A 94 1194 56 HOH HOH . I 4 HOH A 95 1195 88 HOH HOH . I 4 HOH A 96 1196 123 HOH HOH . I 4 HOH A 97 1197 71 HOH HOH . I 4 HOH A 98 1198 125 HOH HOH . I 4 HOH A 99 1199 62 HOH HOH . I 4 HOH A 100 1200 28 HOH HOH . I 4 HOH A 101 1201 151 HOH HOH . I 4 HOH A 102 1202 98 HOH HOH . I 4 HOH A 103 1203 154 HOH HOH . I 4 HOH A 104 1204 143 HOH HOH . I 4 HOH A 105 1205 144 HOH HOH . I 4 HOH A 106 1206 163 HOH HOH . I 4 HOH A 107 1207 121 HOH HOH . I 4 HOH A 108 1208 130 HOH HOH . I 4 HOH A 109 1209 105 HOH HOH . I 4 HOH A 110 1210 135 HOH HOH . I 4 HOH A 111 1211 137 HOH HOH . I 4 HOH A 112 1212 97 HOH HOH . I 4 HOH A 113 1213 26 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol I _atom_site.label_atom_id I _atom_site.label_comp_id IOD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 4.851 _atom_site.Cartn_y 9.95 _atom_site.Cartn_z 37.009 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 31.86 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id I _atom_site.auth_comp_id IOD _atom_site.auth_seq_id 1001 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 217 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #