data_5BVN
#
_model_server_result.job_id            WNdrUxur6DoTd_cikJka1Q 
_model_server_result.datetime_utc      '2024-10-10 11:27:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5bvn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":1001}' 
#
_entry.id    5BVN 
#
_exptl.entry_id    5BVN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              126.904 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'IODIDE ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5BVN 
_cell.length_a            61.04 
_cell.length_b            78.497 
_cell.length_c            74.499 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5BVN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'I -1' 
_chem_comp.formula_weight    126.904 
_chem_comp.id                IOD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'IODIDE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5BVN 
_atom_sites.fract_transf_matrix[1][1]    0.016383 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012739 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013423 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 IOD A 1 1001 1 IOD IOD . 
C 3 4VD A 1 1002 1 4VD L01 . 
D 4 HOH A 1 1101 84 HOH HOH . 
D 4 HOH A 2 1102 114 HOH HOH . 
D 4 HOH A 3 1103 7 HOH HOH . 
D 4 HOH A 4 1104 137 HOH HOH . 
D 4 HOH A 5 1105 139 HOH HOH . 
D 4 HOH A 6 1106 9 HOH HOH . 
D 4 HOH A 7 1107 49 HOH HOH . 
D 4 HOH A 8 1108 50 HOH HOH . 
D 4 HOH A 9 1109 65 HOH HOH . 
D 4 HOH A 10 1110 11 HOH HOH . 
D 4 HOH A 11 1111 22 HOH HOH . 
D 4 HOH A 12 1112 106 HOH HOH . 
D 4 HOH A 13 1113 89 HOH HOH . 
D 4 HOH A 14 1114 57 HOH HOH . 
D 4 HOH A 15 1115 151 HOH HOH . 
D 4 HOH A 16 1116 12 HOH HOH . 
D 4 HOH A 17 1117 71 HOH HOH . 
D 4 HOH A 18 1118 34 HOH HOH . 
D 4 HOH A 19 1119 97 HOH HOH . 
D 4 HOH A 20 1120 104 HOH HOH . 
D 4 HOH A 21 1121 96 HOH HOH . 
D 4 HOH A 22 1122 13 HOH HOH . 
D 4 HOH A 23 1123 120 HOH HOH . 
D 4 HOH A 24 1124 142 HOH HOH . 
D 4 HOH A 25 1125 105 HOH HOH . 
D 4 HOH A 26 1126 25 HOH HOH . 
D 4 HOH A 27 1127 133 HOH HOH . 
D 4 HOH A 28 1128 31 HOH HOH . 
D 4 HOH A 29 1129 8 HOH HOH . 
D 4 HOH A 30 1130 72 HOH HOH . 
D 4 HOH A 31 1131 92 HOH HOH . 
D 4 HOH A 32 1132 64 HOH HOH . 
D 4 HOH A 33 1133 108 HOH HOH . 
D 4 HOH A 34 1134 79 HOH HOH . 
D 4 HOH A 35 1135 42 HOH HOH . 
D 4 HOH A 36 1136 170 HOH HOH . 
D 4 HOH A 37 1137 131 HOH HOH . 
D 4 HOH A 38 1138 53 HOH HOH . 
D 4 HOH A 39 1139 82 HOH HOH . 
D 4 HOH A 40 1140 23 HOH HOH . 
D 4 HOH A 41 1141 24 HOH HOH . 
D 4 HOH A 42 1142 158 HOH HOH . 
D 4 HOH A 43 1143 73 HOH HOH . 
D 4 HOH A 44 1144 144 HOH HOH . 
D 4 HOH A 45 1145 41 HOH HOH . 
D 4 HOH A 46 1146 17 HOH HOH . 
D 4 HOH A 47 1147 28 HOH HOH . 
D 4 HOH A 48 1148 69 HOH HOH . 
D 4 HOH A 49 1149 154 HOH HOH . 
D 4 HOH A 50 1150 98 HOH HOH . 
D 4 HOH A 51 1151 2 HOH HOH . 
D 4 HOH A 52 1152 26 HOH HOH . 
D 4 HOH A 53 1153 29 HOH HOH . 
D 4 HOH A 54 1154 87 HOH HOH . 
D 4 HOH A 55 1155 160 HOH HOH . 
D 4 HOH A 56 1156 148 HOH HOH . 
D 4 HOH A 57 1157 85 HOH HOH . 
D 4 HOH A 58 1158 86 HOH HOH . 
D 4 HOH A 59 1159 138 HOH HOH . 
D 4 HOH A 60 1160 52 HOH HOH . 
D 4 HOH A 61 1161 150 HOH HOH . 
D 4 HOH A 62 1162 122 HOH HOH . 
D 4 HOH A 63 1163 121 HOH HOH . 
D 4 HOH A 64 1164 77 HOH HOH . 
D 4 HOH A 65 1165 74 HOH HOH . 
D 4 HOH A 66 1166 83 HOH HOH . 
D 4 HOH A 67 1167 10 HOH HOH . 
D 4 HOH A 68 1168 134 HOH HOH . 
D 4 HOH A 69 1169 171 HOH HOH . 
D 4 HOH A 70 1170 39 HOH HOH . 
D 4 HOH A 71 1171 55 HOH HOH . 
D 4 HOH A 72 1172 59 HOH HOH . 
D 4 HOH A 73 1173 149 HOH HOH . 
D 4 HOH A 74 1174 15 HOH HOH . 
D 4 HOH A 75 1175 45 HOH HOH . 
D 4 HOH A 76 1176 37 HOH HOH . 
D 4 HOH A 77 1177 109 HOH HOH . 
D 4 HOH A 78 1178 125 HOH HOH . 
D 4 HOH A 79 1179 129 HOH HOH . 
D 4 HOH A 80 1180 47 HOH HOH . 
D 4 HOH A 81 1181 91 HOH HOH . 
D 4 HOH A 82 1182 135 HOH HOH . 
D 4 HOH A 83 1183 44 HOH HOH . 
D 4 HOH A 84 1184 141 HOH HOH . 
D 4 HOH A 85 1185 30 HOH HOH . 
D 4 HOH A 86 1186 130 HOH HOH . 
D 4 HOH A 87 1187 88 HOH HOH . 
D 4 HOH A 88 1188 21 HOH HOH . 
D 4 HOH A 89 1189 117 HOH HOH . 
D 4 HOH A 90 1190 14 HOH HOH . 
D 4 HOH A 91 1191 27 HOH HOH . 
D 4 HOH A 92 1192 113 HOH HOH . 
D 4 HOH A 93 1193 32 HOH HOH . 
D 4 HOH A 94 1194 60 HOH HOH . 
D 4 HOH A 95 1195 63 HOH HOH . 
D 4 HOH A 96 1196 62 HOH HOH . 
D 4 HOH A 97 1197 51 HOH HOH . 
D 4 HOH A 98 1198 136 HOH HOH . 
D 4 HOH A 99 1199 38 HOH HOH . 
D 4 HOH A 100 1200 115 HOH HOH . 
D 4 HOH A 101 1201 56 HOH HOH . 
D 4 HOH A 102 1202 102 HOH HOH . 
D 4 HOH A 103 1203 33 HOH HOH . 
D 4 HOH A 104 1204 100 HOH HOH . 
D 4 HOH A 105 1205 99 HOH HOH . 
D 4 HOH A 106 1206 19 HOH HOH . 
D 4 HOH A 107 1207 159 HOH HOH . 
D 4 HOH A 108 1208 5 HOH HOH . 
D 4 HOH A 109 1209 36 HOH HOH . 
D 4 HOH A 110 1210 94 HOH HOH . 
D 4 HOH A 111 1211 164 HOH HOH . 
D 4 HOH A 112 1212 58 HOH HOH . 
D 4 HOH A 113 1213 147 HOH HOH . 
D 4 HOH A 114 1214 162 HOH HOH . 
D 4 HOH A 115 1215 40 HOH HOH . 
D 4 HOH A 116 1216 168 HOH HOH . 
D 4 HOH A 117 1217 43 HOH HOH . 
D 4 HOH A 118 1218 35 HOH HOH . 
D 4 HOH A 119 1219 54 HOH HOH . 
D 4 HOH A 120 1220 156 HOH HOH . 
D 4 HOH A 121 1221 157 HOH HOH . 
D 4 HOH A 122 1222 48 HOH HOH . 
D 4 HOH A 123 1223 78 HOH HOH . 
D 4 HOH A 124 1224 18 HOH HOH . 
D 4 HOH A 125 1225 16 HOH HOH . 
D 4 HOH A 126 1226 95 HOH HOH . 
D 4 HOH A 127 1227 6 HOH HOH . 
D 4 HOH A 128 1228 66 HOH HOH . 
D 4 HOH A 129 1229 112 HOH HOH . 
D 4 HOH A 130 1230 93 HOH HOH . 
D 4 HOH A 131 1231 143 HOH HOH . 
D 4 HOH A 132 1232 119 HOH HOH . 
D 4 HOH A 133 1233 90 HOH HOH . 
D 4 HOH A 134 1234 20 HOH HOH . 
D 4 HOH A 135 1235 76 HOH HOH . 
D 4 HOH A 136 1236 127 HOH HOH . 
D 4 HOH A 137 1237 46 HOH HOH . 
D 4 HOH A 138 1238 101 HOH HOH . 
D 4 HOH A 139 1239 4 HOH HOH . 
D 4 HOH A 140 1240 169 HOH HOH . 
D 4 HOH A 141 1241 167 HOH HOH . 
D 4 HOH A 142 1242 1 HOH HOH . 
D 4 HOH A 143 1243 110 HOH HOH . 
D 4 HOH A 144 1244 67 HOH HOH . 
D 4 HOH A 145 1245 126 HOH HOH . 
D 4 HOH A 146 1246 155 HOH HOH . 
D 4 HOH A 147 1247 161 HOH HOH . 
D 4 HOH A 148 1248 61 HOH HOH . 
D 4 HOH A 149 1249 146 HOH HOH . 
D 4 HOH A 150 1250 107 HOH HOH . 
D 4 HOH A 151 1251 3 HOH HOH . 
D 4 HOH A 152 1252 123 HOH HOH . 
D 4 HOH A 153 1253 152 HOH HOH . 
D 4 HOH A 154 1254 118 HOH HOH . 
D 4 HOH A 155 1255 166 HOH HOH . 
D 4 HOH A 156 1256 145 HOH HOH . 
D 4 HOH A 157 1257 165 HOH HOH . 
D 4 HOH A 158 1258 80 HOH HOH . 
D 4 HOH A 159 1259 124 HOH HOH . 
D 4 HOH A 160 1260 75 HOH HOH . 
D 4 HOH A 161 1261 132 HOH HOH . 
D 4 HOH A 162 1262 128 HOH HOH . 
D 4 HOH A 163 1263 103 HOH HOH . 
D 4 HOH A 164 1264 81 HOH HOH . 
D 4 HOH A 165 1265 68 HOH HOH . 
D 4 HOH A 166 1266 111 HOH HOH . 
D 4 HOH A 167 1267 116 HOH HOH . 
D 4 HOH A 168 1268 140 HOH HOH . 
D 4 HOH A 169 1269 163 HOH HOH . 
D 4 HOH A 170 1270 70 HOH HOH . 
D 4 HOH A 171 1271 153 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           I 
_atom_site.label_atom_id         I 
_atom_site.label_comp_id         IOD 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         B 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               4.045 
_atom_site.Cartn_y               12.147 
_atom_site.Cartn_z               35.853 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        89.47 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          I 
_atom_site.auth_comp_id          IOD 
_atom_site.auth_seq_id           1001 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           263 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           1 
#