data_5BVN # _model_server_result.job_id nO0RsWPjYJsS7g0uqU6C5g _model_server_result.datetime_utc '2024-10-10 11:27:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5bvn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1002}' # _entry.id 5BVN # _exptl.entry_id 5BVN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 417.436 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[5-({[(3-fluorophenyl)carbamoyl]amino}methyl)-2-methylphenyl]imidazo[1,2-a]pyridine-3-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5BVN _cell.length_a 61.04 _cell.length_b 78.497 _cell.length_c 74.499 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5BVN _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C23 H20 F N5 O2' _chem_comp.formula_weight 417.436 _chem_comp.id 4VD _chem_comp.mon_nstd_flag . _chem_comp.name N-[5-({[(3-fluorophenyl)carbamoyl]amino}methyl)-2-methylphenyl]imidazo[1,2-a]pyridine-3-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F16 C15 4VD sing 1 n n C15 C14 4VD doub 2 n y C15 C17 4VD sing 3 n y C14 C13 4VD sing 4 n y C17 C11 4VD doub 5 n y C13 C12 4VD doub 6 n y N25 C24 4VD sing 7 n y N25 C26 4VD doub 8 n y C11 C12 4VD sing 9 n y C11 N10 4VD sing 10 n n C24 C23 4VD doub 11 n y O9 C8 4VD doub 12 n n C26 C27 4VD sing 13 n y C26 N31 4VD sing 14 n y C27 C28 4VD doub 15 n y N10 C8 4VD sing 16 n n C8 N7 4VD sing 17 n n C23 N31 4VD sing 18 n y C23 C21 4VD sing 19 n n N31 C30 4VD sing 20 n y N20 C21 4VD sing 21 n n N20 C19 4VD sing 22 n n C28 C29 4VD sing 23 n y C21 O22 4VD doub 24 n n N7 C6 4VD sing 25 n n C19 C18 4VD doub 26 n y C19 C2 4VD sing 27 n y C18 C5 4VD sing 28 n y C30 C29 4VD doub 29 n y C6 C5 4VD sing 30 n n C5 C4 4VD doub 31 n y C2 C1 4VD sing 32 n n C2 C3 4VD doub 33 n y C4 C3 4VD sing 34 n y C1 H34 4VD sing 35 n n C1 H33 4VD sing 36 n n C1 H32 4VD sing 37 n n C3 H35 4VD sing 38 n n C6 H38 4VD sing 39 n n C6 H37 4VD sing 40 n n C12 H41 4VD sing 41 n n C13 H42 4VD sing 42 n n C14 H43 4VD sing 43 n n C24 H47 4VD sing 44 n n C27 H48 4VD sing 45 n n C28 H49 4VD sing 46 n n C4 H36 4VD sing 47 n n N7 H39 4VD sing 48 n n N10 H40 4VD sing 49 n n C17 H44 4VD sing 50 n n C18 H45 4VD sing 51 n n N20 H46 4VD sing 52 n n C29 H50 4VD sing 53 n n C30 H51 4VD sing 54 n n # _atom_sites.entry_id 5BVN _atom_sites.fract_transf_matrix[1][1] 0.016383 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012739 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013423 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IOD A 1 1001 1 IOD IOD . C 3 4VD A 1 1002 1 4VD L01 . D 4 HOH A 1 1101 84 HOH HOH . D 4 HOH A 2 1102 114 HOH HOH . D 4 HOH A 3 1103 7 HOH HOH . D 4 HOH A 4 1104 137 HOH HOH . D 4 HOH A 5 1105 139 HOH HOH . D 4 HOH A 6 1106 9 HOH HOH . D 4 HOH A 7 1107 49 HOH HOH . D 4 HOH A 8 1108 50 HOH HOH . D 4 HOH A 9 1109 65 HOH HOH . D 4 HOH A 10 1110 11 HOH HOH . D 4 HOH A 11 1111 22 HOH HOH . D 4 HOH A 12 1112 106 HOH HOH . D 4 HOH A 13 1113 89 HOH HOH . D 4 HOH A 14 1114 57 HOH HOH . D 4 HOH A 15 1115 151 HOH HOH . D 4 HOH A 16 1116 12 HOH HOH . D 4 HOH A 17 1117 71 HOH HOH . D 4 HOH A 18 1118 34 HOH HOH . D 4 HOH A 19 1119 97 HOH HOH . D 4 HOH A 20 1120 104 HOH HOH . D 4 HOH A 21 1121 96 HOH HOH . D 4 HOH A 22 1122 13 HOH HOH . D 4 HOH A 23 1123 120 HOH HOH . D 4 HOH A 24 1124 142 HOH HOH . D 4 HOH A 25 1125 105 HOH HOH . D 4 HOH A 26 1126 25 HOH HOH . D 4 HOH A 27 1127 133 HOH HOH . D 4 HOH A 28 1128 31 HOH HOH . D 4 HOH A 29 1129 8 HOH HOH . D 4 HOH A 30 1130 72 HOH HOH . D 4 HOH A 31 1131 92 HOH HOH . D 4 HOH A 32 1132 64 HOH HOH . D 4 HOH A 33 1133 108 HOH HOH . D 4 HOH A 34 1134 79 HOH HOH . D 4 HOH A 35 1135 42 HOH HOH . D 4 HOH A 36 1136 170 HOH HOH . D 4 HOH A 37 1137 131 HOH HOH . D 4 HOH A 38 1138 53 HOH HOH . D 4 HOH A 39 1139 82 HOH HOH . D 4 HOH A 40 1140 23 HOH HOH . D 4 HOH A 41 1141 24 HOH HOH . D 4 HOH A 42 1142 158 HOH HOH . D 4 HOH A 43 1143 73 HOH HOH . D 4 HOH A 44 1144 144 HOH HOH . D 4 HOH A 45 1145 41 HOH HOH . D 4 HOH A 46 1146 17 HOH HOH . D 4 HOH A 47 1147 28 HOH HOH . D 4 HOH A 48 1148 69 HOH HOH . D 4 HOH A 49 1149 154 HOH HOH . D 4 HOH A 50 1150 98 HOH HOH . D 4 HOH A 51 1151 2 HOH HOH . D 4 HOH A 52 1152 26 HOH HOH . D 4 HOH A 53 1153 29 HOH HOH . D 4 HOH A 54 1154 87 HOH HOH . D 4 HOH A 55 1155 160 HOH HOH . D 4 HOH A 56 1156 148 HOH HOH . D 4 HOH A 57 1157 85 HOH HOH . D 4 HOH A 58 1158 86 HOH HOH . D 4 HOH A 59 1159 138 HOH HOH . D 4 HOH A 60 1160 52 HOH HOH . D 4 HOH A 61 1161 150 HOH HOH . D 4 HOH A 62 1162 122 HOH HOH . D 4 HOH A 63 1163 121 HOH HOH . D 4 HOH A 64 1164 77 HOH HOH . D 4 HOH A 65 1165 74 HOH HOH . D 4 HOH A 66 1166 83 HOH HOH . D 4 HOH A 67 1167 10 HOH HOH . D 4 HOH A 68 1168 134 HOH HOH . D 4 HOH A 69 1169 171 HOH HOH . D 4 HOH A 70 1170 39 HOH HOH . D 4 HOH A 71 1171 55 HOH HOH . D 4 HOH A 72 1172 59 HOH HOH . D 4 HOH A 73 1173 149 HOH HOH . D 4 HOH A 74 1174 15 HOH HOH . D 4 HOH A 75 1175 45 HOH HOH . D 4 HOH A 76 1176 37 HOH HOH . D 4 HOH A 77 1177 109 HOH HOH . D 4 HOH A 78 1178 125 HOH HOH . D 4 HOH A 79 1179 129 HOH HOH . D 4 HOH A 80 1180 47 HOH HOH . D 4 HOH A 81 1181 91 HOH HOH . D 4 HOH A 82 1182 135 HOH HOH . D 4 HOH A 83 1183 44 HOH HOH . D 4 HOH A 84 1184 141 HOH HOH . D 4 HOH A 85 1185 30 HOH HOH . D 4 HOH A 86 1186 130 HOH HOH . D 4 HOH A 87 1187 88 HOH HOH . D 4 HOH A 88 1188 21 HOH HOH . D 4 HOH A 89 1189 117 HOH HOH . D 4 HOH A 90 1190 14 HOH HOH . D 4 HOH A 91 1191 27 HOH HOH . D 4 HOH A 92 1192 113 HOH HOH . D 4 HOH A 93 1193 32 HOH HOH . D 4 HOH A 94 1194 60 HOH HOH . D 4 HOH A 95 1195 63 HOH HOH . D 4 HOH A 96 1196 62 HOH HOH . D 4 HOH A 97 1197 51 HOH HOH . D 4 HOH A 98 1198 136 HOH HOH . D 4 HOH A 99 1199 38 HOH HOH . D 4 HOH A 100 1200 115 HOH HOH . D 4 HOH A 101 1201 56 HOH HOH . D 4 HOH A 102 1202 102 HOH HOH . D 4 HOH A 103 1203 33 HOH HOH . D 4 HOH A 104 1204 100 HOH HOH . D 4 HOH A 105 1205 99 HOH HOH . D 4 HOH A 106 1206 19 HOH HOH . D 4 HOH A 107 1207 159 HOH HOH . D 4 HOH A 108 1208 5 HOH HOH . D 4 HOH A 109 1209 36 HOH HOH . D 4 HOH A 110 1210 94 HOH HOH . D 4 HOH A 111 1211 164 HOH HOH . D 4 HOH A 112 1212 58 HOH HOH . D 4 HOH A 113 1213 147 HOH HOH . D 4 HOH A 114 1214 162 HOH HOH . D 4 HOH A 115 1215 40 HOH HOH . D 4 HOH A 116 1216 168 HOH HOH . D 4 HOH A 117 1217 43 HOH HOH . D 4 HOH A 118 1218 35 HOH HOH . D 4 HOH A 119 1219 54 HOH HOH . D 4 HOH A 120 1220 156 HOH HOH . D 4 HOH A 121 1221 157 HOH HOH . D 4 HOH A 122 1222 48 HOH HOH . D 4 HOH A 123 1223 78 HOH HOH . D 4 HOH A 124 1224 18 HOH HOH . D 4 HOH A 125 1225 16 HOH HOH . D 4 HOH A 126 1226 95 HOH HOH . D 4 HOH A 127 1227 6 HOH HOH . D 4 HOH A 128 1228 66 HOH HOH . D 4 HOH A 129 1229 112 HOH HOH . D 4 HOH A 130 1230 93 HOH HOH . D 4 HOH A 131 1231 143 HOH HOH . D 4 HOH A 132 1232 119 HOH HOH . D 4 HOH A 133 1233 90 HOH HOH . D 4 HOH A 134 1234 20 HOH HOH . D 4 HOH A 135 1235 76 HOH HOH . D 4 HOH A 136 1236 127 HOH HOH . D 4 HOH A 137 1237 46 HOH HOH . D 4 HOH A 138 1238 101 HOH HOH . D 4 HOH A 139 1239 4 HOH HOH . D 4 HOH A 140 1240 169 HOH HOH . D 4 HOH A 141 1241 167 HOH HOH . D 4 HOH A 142 1242 1 HOH HOH . D 4 HOH A 143 1243 110 HOH HOH . D 4 HOH A 144 1244 67 HOH HOH . D 4 HOH A 145 1245 126 HOH HOH . D 4 HOH A 146 1246 155 HOH HOH . D 4 HOH A 147 1247 161 HOH HOH . D 4 HOH A 148 1248 61 HOH HOH . D 4 HOH A 149 1249 146 HOH HOH . D 4 HOH A 150 1250 107 HOH HOH . D 4 HOH A 151 1251 3 HOH HOH . D 4 HOH A 152 1252 123 HOH HOH . D 4 HOH A 153 1253 152 HOH HOH . D 4 HOH A 154 1254 118 HOH HOH . D 4 HOH A 155 1255 166 HOH HOH . D 4 HOH A 156 1256 145 HOH HOH . D 4 HOH A 157 1257 165 HOH HOH . D 4 HOH A 158 1258 80 HOH HOH . D 4 HOH A 159 1259 124 HOH HOH . D 4 HOH A 160 1260 75 HOH HOH . D 4 HOH A 161 1261 132 HOH HOH . D 4 HOH A 162 1262 128 HOH HOH . D 4 HOH A 163 1263 103 HOH HOH . D 4 HOH A 164 1264 81 HOH HOH . D 4 HOH A 165 1265 68 HOH HOH . D 4 HOH A 166 1266 111 HOH HOH . D 4 HOH A 167 1267 116 HOH HOH . D 4 HOH A 168 1268 140 HOH HOH . D 4 HOH A 169 1269 163 HOH HOH . D 4 HOH A 170 1270 70 HOH HOH . D 4 HOH A 171 1271 153 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 4VD . . . C 3 22.722 41.192 38.299 1 26.48 ? C1 4VD 1002 A 1 HETATM 2 C C2 4VD . . . C 3 22.704 39.689 38.185 1 28.11 ? C2 4VD 1002 A 1 HETATM 3 C C3 4VD . . . C 3 23.793 38.959 38.657 1 26.24 ? C3 4VD 1002 A 1 HETATM 4 C C5 4VD . . . C 3 22.749 36.887 38.021 1 28.79 ? C5 4VD 1002 A 1 HETATM 5 C C6 4VD . . . C 3 22.756 35.379 37.941 1 25.55 ? C6 4VD 1002 A 1 HETATM 6 C C8 4VD . . . C 3 23.964 34.083 36.239 1 19.95 ? C8 4VD 1002 A 1 HETATM 7 O O9 4VD . . . C 3 22.987 34.01 35.502 1 20.58 ? O9 4VD 1002 A 1 HETATM 8 C C11 4VD . . . C 3 25.343 32.425 35.002 1 22.89 ? C11 4VD 1002 A 1 HETATM 9 C C12 4VD . . . C 3 26.294 31.438 35.232 1 25.79 ? C12 4VD 1002 A 1 HETATM 10 C C13 4VD . . . C 3 26.518 30.454 34.283 1 30.41 ? C13 4VD 1002 A 1 HETATM 11 C C14 4VD . . . C 3 25.78 30.44 33.114 1 32.1 ? C14 4VD 1002 A 1 HETATM 12 C C15 4VD . . . C 3 24.837 31.405 32.919 1 28.02 ? C15 4VD 1002 A 1 HETATM 13 C C19 4VD . . . C 3 21.629 39 37.62 1 28.44 ? C19 4VD 1002 A 1 HETATM 14 C C21 4VD . . . C 3 19.218 39.483 37.542 1 21.53 ? C21 4VD 1002 A 1 HETATM 15 C C23 4VD . . . C 3 18.143 40.133 36.764 1 14.81 ? C23 4VD 1002 A 1 HETATM 16 C C24 4VD . . . C 3 18.197 40.796 35.565 1 13.77 ? C24 4VD 1002 A 1 HETATM 17 C C26 4VD . . . C 3 16.106 40.796 36.129 1 18.04 ? C26 4VD 1002 A 1 HETATM 18 C C27 4VD . . . C 3 14.713 40.945 36.277 1 17.77 ? C27 4VD 1002 A 1 HETATM 19 C C28 4VD . . . C 3 14.062 40.381 37.364 1 15.3 ? C28 4VD 1002 A 1 HETATM 20 C C4 4VD . . . C 3 23.81 37.577 38.583 1 26.76 ? C4 4VD 1002 A 1 HETATM 21 N N7 4VD . . . C 3 23.97 34.836 37.357 1 25.39 ? N7 4VD 1002 A 1 HETATM 22 N N10 4VD . . . C 3 25.137 33.413 35.988 1 19.18 ? N10 4VD 1002 A 1 HETATM 23 F F16 4VD . . . C 3 24.115 31.391 31.764 1 28.01 ? F16 4VD 1002 A 1 HETATM 24 C C17 4VD . . . C 3 24.603 32.398 33.824 1 26.16 ? C17 4VD 1002 A 1 HETATM 25 C C18 4VD . . . C 3 21.665 37.613 37.545 1 31.19 ? C18 4VD 1002 A 1 HETATM 26 N N20 4VD . . . C 3 20.5 39.7 37.139 1 24.43 ? N20 4VD 1002 A 1 HETATM 27 O O22 4VD . . . C 3 18.956 38.774 38.514 1 27.5 ? O22 4VD 1002 A 1 HETATM 28 N N25 4VD . . . C 3 16.947 41.214 35.179 1 16.47 ? N25 4VD 1002 A 1 HETATM 29 C C29 4VD . . . C 3 14.782 39.711 38.336 1 11.91 ? C29 4VD 1002 A 1 HETATM 30 C C30 4VD . . . C 3 16.131 39.586 38.22 1 14.07 ? C30 4VD 1002 A 1 HETATM 31 N N31 4VD . . . C 3 16.796 40.122 37.137 1 15.97 ? N31 4VD 1002 A 1 HETATM 32 H H34 4VD . . . C 3 22.356 41.584 37.486 1 26.18 ? H34 4VD 1002 A 1 HETATM 33 H H33 4VD . . . C 3 23.64 41.499 38.422 1 26.6 ? H33 4VD 1002 A 1 HETATM 34 H H32 4VD . . . C 3 22.183 41.466 39.063 1 25.88 ? H32 4VD 1002 A 1 HETATM 35 H H35 4VD . . . C 3 24.524 39.412 39.039 1 27.1 ? H35 4VD 1002 A 1 HETATM 36 H H38 4VD . . . C 3 21.988 35.087 37.406 1 24.9 ? H38 4VD 1002 A 1 HETATM 37 H H37 4VD . . . C 3 22.649 35.014 38.844 1 25.64 ? H37 4VD 1002 A 1 HETATM 38 H H41 4VD . . . C 3 26.803 31.451 36.028 1 25.04 ? H41 4VD 1002 A 1 HETATM 39 H H42 4VD . . . C 3 27.168 29.79 34.437 1 30.86 ? H42 4VD 1002 A 1 HETATM 40 H H43 4VD . . . C 3 25.92 29.769 32.466 1 32.61 ? H43 4VD 1002 A 1 HETATM 41 H H47 4VD . . . C 3 18.976 40.972 35.068 1 13.45 ? H47 4VD 1002 A 1 HETATM 42 H H48 4VD . . . C 3 14.222 41.395 35.624 1 18.32 ? H48 4VD 1002 A 1 HETATM 43 H H49 4VD . . . C 3 13.128 40.484 37.458 1 15.26 ? H49 4VD 1002 A 1 HETATM 44 H H36 4VD . . . C 3 24.555 37.101 38.906 1 27.03 ? H36 4VD 1002 A 1 HETATM 45 H H39 4VD . . . C 3 24.742 35.086 37.699 1 25.2 ? H39 4VD 1002 A 1 HETATM 46 H H40 4VD . . . C 3 25.764 33.47 36.597 1 19.16 ? H40 4VD 1002 A 1 HETATM 47 H H44 4VD . . . C 3 23.95 33.046 33.652 1 25.99 ? H44 4VD 1002 A 1 HETATM 48 H H45 4VD . . . C 3 20.93 37.154 37.17 1 31.63 ? H45 4VD 1002 A 1 HETATM 49 H H46 4VD . . . C 3 20.645 40.289 36.516 1 24.26 ? H46 4VD 1002 A 1 HETATM 50 H H50 4VD . . . C 3 14.34 39.352 39.086 1 10 ? H50 4VD 1002 A 1 HETATM 51 H H51 4VD . . . C 3 16.617 39.124 38.876 1 14.73 ? H51 4VD 1002 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 51 #