data_5BWB # _model_server_result.job_id rOIEtqlJLvShQUqXiKsmyw _model_server_result.datetime_utc '2024-11-29 03:59:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5bwb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 5BWB # _exptl.entry_id 5BWB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5BWB _cell.length_a 112.303 _cell.length_b 112.303 _cell.length_c 137.114 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5BWB _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x,-x+y,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 45.704667 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 67 A CYS 67 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf2 A SG CYS 254 A CYS 254 1_555 A SG CYS 265 A CYS 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 A SG CYS 402 A CYS 402 1_555 A SG CYS 521 A CYS 521 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? covale ? covale1 A ND2 ASN 59 A ASN 59 1_555 C C1 NAG . A NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.528 ? covale ? covale2 A ND2 ASN 416 A ASN 416 1_555 B C1 NAG . A NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 312 n n C1 O1 NAG sing 313 n n C1 O5 NAG sing 314 n n C1 H1 NAG sing 315 n n C2 C3 NAG sing 316 n n C2 N2 NAG sing 317 n n C2 H2 NAG sing 318 n n C3 C4 NAG sing 319 n n C3 O3 NAG sing 320 n n C3 H3 NAG sing 321 n n C4 C5 NAG sing 322 n n C4 O4 NAG sing 323 n n C4 H4 NAG sing 324 n n C5 C6 NAG sing 325 n n C5 O5 NAG sing 326 n n C5 H5 NAG sing 327 n n C6 O6 NAG sing 328 n n C6 H61 NAG sing 329 n n C6 H62 NAG sing 330 n n C7 C8 NAG sing 331 n n C7 N2 NAG sing 332 n n C7 O7 NAG doub 333 n n C8 H81 NAG sing 334 n n C8 H82 NAG sing 335 n n C8 H83 NAG sing 336 n n N2 HN2 NAG sing 337 n n O1 HO1 NAG sing 338 n n O3 HO3 NAG sing 339 n n O4 HO4 NAG sing 340 n n O6 HO6 NAG sing 341 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 5BWB _atom_sites.fract_transf_matrix[1][1] 0.008904 _atom_sites.fract_transf_matrix[1][2] 0.005141 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010282 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007293 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 601 2536 NAG NAG . C 2 NAG A 1 602 2537 NAG NAG . D 3 MES A 1 603 8010 MES MES . E 4 4VV A 1 604 9999 4VV 2B7 . F 5 HOH A 1 701 10 HOH HOH . F 5 HOH A 2 702 166 HOH HOH . F 5 HOH A 3 703 127 HOH HOH . F 5 HOH A 4 704 31 HOH HOH . F 5 HOH A 5 705 99 HOH HOH . F 5 HOH A 6 706 130 HOH HOH . F 5 HOH A 7 707 23 HOH HOH . F 5 HOH A 8 708 150 HOH HOH . F 5 HOH A 9 709 93 HOH HOH . F 5 HOH A 10 710 192 HOH HOH . F 5 HOH A 11 711 20 HOH HOH . F 5 HOH A 12 712 42 HOH HOH . F 5 HOH A 13 713 102 HOH HOH . F 5 HOH A 14 714 188 HOH HOH . F 5 HOH A 15 715 140 HOH HOH . F 5 HOH A 16 716 30 HOH HOH . F 5 HOH A 17 717 1 HOH HOH . F 5 HOH A 18 718 81 HOH HOH . F 5 HOH A 19 719 113 HOH HOH . F 5 HOH A 20 720 177 HOH HOH . F 5 HOH A 21 721 176 HOH HOH . F 5 HOH A 22 722 138 HOH HOH . F 5 HOH A 23 723 136 HOH HOH . F 5 HOH A 24 724 83 HOH HOH . F 5 HOH A 25 725 44 HOH HOH . F 5 HOH A 26 726 9 HOH HOH . F 5 HOH A 27 727 79 HOH HOH . F 5 HOH A 28 728 45 HOH HOH . F 5 HOH A 29 729 90 HOH HOH . F 5 HOH A 30 730 185 HOH HOH . F 5 HOH A 31 731 8 HOH HOH . F 5 HOH A 32 732 15 HOH HOH . F 5 HOH A 33 733 3 HOH HOH . F 5 HOH A 34 734 60 HOH HOH . F 5 HOH A 35 735 13 HOH HOH . F 5 HOH A 36 736 6 HOH HOH . F 5 HOH A 37 737 71 HOH HOH . F 5 HOH A 38 738 167 HOH HOH . F 5 HOH A 39 739 52 HOH HOH . F 5 HOH A 40 740 189 HOH HOH . F 5 HOH A 41 741 95 HOH HOH . F 5 HOH A 42 742 159 HOH HOH . F 5 HOH A 43 743 141 HOH HOH . F 5 HOH A 44 744 85 HOH HOH . F 5 HOH A 45 745 194 HOH HOH . F 5 HOH A 46 746 121 HOH HOH . F 5 HOH A 47 747 171 HOH HOH . F 5 HOH A 48 748 74 HOH HOH . F 5 HOH A 49 749 164 HOH HOH . F 5 HOH A 50 750 38 HOH HOH . F 5 HOH A 51 751 135 HOH HOH . F 5 HOH A 52 752 61 HOH HOH . F 5 HOH A 53 753 134 HOH HOH . F 5 HOH A 54 754 151 HOH HOH . F 5 HOH A 55 755 53 HOH HOH . F 5 HOH A 56 756 107 HOH HOH . F 5 HOH A 57 757 149 HOH HOH . F 5 HOH A 58 758 122 HOH HOH . F 5 HOH A 59 759 51 HOH HOH . F 5 HOH A 60 760 69 HOH HOH . F 5 HOH A 61 761 70 HOH HOH . F 5 HOH A 62 762 88 HOH HOH . F 5 HOH A 63 763 18 HOH HOH . F 5 HOH A 64 764 91 HOH HOH . F 5 HOH A 65 765 111 HOH HOH . F 5 HOH A 66 766 117 HOH HOH . F 5 HOH A 67 767 108 HOH HOH . F 5 HOH A 68 768 158 HOH HOH . F 5 HOH A 69 769 105 HOH HOH . F 5 HOH A 70 770 19 HOH HOH . F 5 HOH A 71 771 25 HOH HOH . F 5 HOH A 72 772 128 HOH HOH . F 5 HOH A 73 773 186 HOH HOH . F 5 HOH A 74 774 106 HOH HOH . F 5 HOH A 75 775 2 HOH HOH . F 5 HOH A 76 776 84 HOH HOH . F 5 HOH A 77 777 75 HOH HOH . F 5 HOH A 78 778 5 HOH HOH . F 5 HOH A 79 779 155 HOH HOH . F 5 HOH A 80 780 123 HOH HOH . F 5 HOH A 81 781 120 HOH HOH . F 5 HOH A 82 782 66 HOH HOH . F 5 HOH A 83 783 47 HOH HOH . F 5 HOH A 84 784 112 HOH HOH . F 5 HOH A 85 785 41 HOH HOH . F 5 HOH A 86 786 184 HOH HOH . F 5 HOH A 87 787 32 HOH HOH . F 5 HOH A 88 788 27 HOH HOH . F 5 HOH A 89 789 68 HOH HOH . F 5 HOH A 90 790 50 HOH HOH . F 5 HOH A 91 791 29 HOH HOH . F 5 HOH A 92 792 73 HOH HOH . F 5 HOH A 93 793 17 HOH HOH . F 5 HOH A 94 794 21 HOH HOH . F 5 HOH A 95 795 7 HOH HOH . F 5 HOH A 96 796 55 HOH HOH . F 5 HOH A 97 797 24 HOH HOH . F 5 HOH A 98 798 109 HOH HOH . F 5 HOH A 99 799 67 HOH HOH . F 5 HOH A 100 800 94 HOH HOH . F 5 HOH A 101 801 22 HOH HOH . F 5 HOH A 102 802 89 HOH HOH . F 5 HOH A 103 803 165 HOH HOH . F 5 HOH A 104 804 100 HOH HOH . F 5 HOH A 105 805 11 HOH HOH . F 5 HOH A 106 806 187 HOH HOH . F 5 HOH A 107 807 96 HOH HOH . F 5 HOH A 108 808 80 HOH HOH . F 5 HOH A 109 809 198 HOH HOH . F 5 HOH A 110 810 181 HOH HOH . F 5 HOH A 111 811 65 HOH HOH . F 5 HOH A 112 812 201 HOH HOH . F 5 HOH A 113 813 35 HOH HOH . F 5 HOH A 114 814 147 HOH HOH . F 5 HOH A 115 815 110 HOH HOH . F 5 HOH A 116 816 132 HOH HOH . F 5 HOH A 117 817 49 HOH HOH . F 5 HOH A 118 818 174 HOH HOH . F 5 HOH A 119 819 57 HOH HOH . F 5 HOH A 120 820 26 HOH HOH . F 5 HOH A 121 821 170 HOH HOH . F 5 HOH A 122 822 28 HOH HOH . F 5 HOH A 123 823 72 HOH HOH . F 5 HOH A 124 824 76 HOH HOH . F 5 HOH A 125 825 14 HOH HOH . F 5 HOH A 126 826 163 HOH HOH . F 5 HOH A 127 827 12 HOH HOH . F 5 HOH A 128 828 97 HOH HOH . F 5 HOH A 129 829 43 HOH HOH . F 5 HOH A 130 830 40 HOH HOH . F 5 HOH A 131 831 114 HOH HOH . F 5 HOH A 132 832 148 HOH HOH . F 5 HOH A 133 833 168 HOH HOH . F 5 HOH A 134 834 205 HOH HOH . F 5 HOH A 135 835 206 HOH HOH . F 5 HOH A 136 836 156 HOH HOH . F 5 HOH A 137 837 78 HOH HOH . F 5 HOH A 138 838 193 HOH HOH . F 5 HOH A 139 839 190 HOH HOH . F 5 HOH A 140 840 195 HOH HOH . F 5 HOH A 141 841 33 HOH HOH . F 5 HOH A 142 842 37 HOH HOH . F 5 HOH A 143 843 124 HOH HOH . F 5 HOH A 144 844 137 HOH HOH . F 5 HOH A 145 845 180 HOH HOH . F 5 HOH A 146 846 143 HOH HOH . F 5 HOH A 147 847 153 HOH HOH . F 5 HOH A 148 848 133 HOH HOH . F 5 HOH A 149 849 64 HOH HOH . F 5 HOH A 150 850 77 HOH HOH . F 5 HOH A 151 851 116 HOH HOH . F 5 HOH A 152 852 125 HOH HOH . F 5 HOH A 153 853 145 HOH HOH . F 5 HOH A 154 854 118 HOH HOH . F 5 HOH A 155 855 183 HOH HOH . F 5 HOH A 156 856 202 HOH HOH . F 5 HOH A 157 857 36 HOH HOH . F 5 HOH A 158 858 59 HOH HOH . F 5 HOH A 159 859 199 HOH HOH . F 5 HOH A 160 860 197 HOH HOH . F 5 HOH A 161 861 104 HOH HOH . F 5 HOH A 162 862 178 HOH HOH . F 5 HOH A 163 863 152 HOH HOH . F 5 HOH A 164 864 139 HOH HOH . F 5 HOH A 165 865 162 HOH HOH . F 5 HOH A 166 866 179 HOH HOH . F 5 HOH A 167 867 172 HOH HOH . F 5 HOH A 168 868 204 HOH HOH . F 5 HOH A 169 869 154 HOH HOH . F 5 HOH A 170 870 62 HOH HOH . F 5 HOH A 171 871 87 HOH HOH . F 5 HOH A 172 872 173 HOH HOH . F 5 HOH A 173 873 82 HOH HOH . F 5 HOH A 174 874 46 HOH HOH . F 5 HOH A 175 875 157 HOH HOH . F 5 HOH A 176 876 129 HOH HOH . F 5 HOH A 177 877 160 HOH HOH . F 5 HOH A 178 878 48 HOH HOH . F 5 HOH A 179 879 98 HOH HOH . F 5 HOH A 180 880 39 HOH HOH . F 5 HOH A 181 881 142 HOH HOH . F 5 HOH A 182 882 115 HOH HOH . F 5 HOH A 183 883 92 HOH HOH . F 5 HOH A 184 884 144 HOH HOH . F 5 HOH A 185 885 103 HOH HOH . F 5 HOH A 186 886 101 HOH HOH . F 5 HOH A 187 887 169 HOH HOH . F 5 HOH A 188 888 146 HOH HOH . F 5 HOH A 189 889 126 HOH HOH . F 5 HOH A 190 890 56 HOH HOH . F 5 HOH A 191 891 54 HOH HOH . F 5 HOH A 192 892 175 HOH HOH . F 5 HOH A 193 893 16 HOH HOH . F 5 HOH A 194 894 86 HOH HOH . F 5 HOH A 195 895 203 HOH HOH . F 5 HOH A 196 896 207 HOH HOH . F 5 HOH A 197 897 34 HOH HOH . F 5 HOH A 198 898 58 HOH HOH . F 5 HOH A 199 899 196 HOH HOH . F 5 HOH A 200 900 208 HOH HOH . F 5 HOH A 201 901 63 HOH HOH . F 5 HOH A 202 902 200 HOH HOH . F 5 HOH A 203 903 4 HOH HOH . F 5 HOH A 204 904 131 HOH HOH . F 5 HOH A 205 905 182 HOH HOH . F 5 HOH A 206 906 191 HOH HOH . F 5 HOH A 207 907 161 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . C 2 -74.397 12.996 41.545 1 53.98 ? C1 NAG 602 A 1 HETATM 2 C C2 NAG . . . C 2 -75.24 11.68 41.774 1 58.89 ? C2 NAG 602 A 1 HETATM 3 C C3 NAG . . . C 2 -74.985 10.44 40.898 1 60.06 ? C3 NAG 602 A 1 HETATM 4 C C4 NAG . . . C 2 -75.097 10.804 39.443 1 60.06 ? C4 NAG 602 A 1 HETATM 5 C C5 NAG . . . C 2 -74.098 11.951 39.208 1 57.37 ? C5 NAG 602 A 1 HETATM 6 C C6 NAG . . . C 2 -74.124 12.39 37.724 1 56.36 ? C6 NAG 602 A 1 HETATM 7 C C7 NAG . . . C 2 -76.069 11.515 44.067 1 56.73 ? C7 NAG 602 A 1 HETATM 8 C C8 NAG . . . C 2 -77.104 12.59 43.796 1 55.34 ? C8 NAG 602 A 1 HETATM 9 N N2 NAG . . . C 2 -75.19 11.164 43.124 1 57.73 ? N2 NAG 602 A 1 HETATM 10 O O3 NAG . . . C 2 -75.946 9.423 41.129 1 62.04 ? O3 NAG 602 A 1 HETATM 11 O O4 NAG . . . C 2 -74.846 9.606 38.704 1 60.95 ? O4 NAG 602 A 1 HETATM 12 O O5 NAG . . . C 2 -74.365 13.088 40.075 1 56.8 ? O5 NAG 602 A 1 HETATM 13 O O6 NAG . . . C 2 -74.925 13.535 37.448 1 54.55 ? O6 NAG 602 A 1 HETATM 14 O O7 NAG . . . C 2 -76.003 10.984 45.203 1 54.95 ? O7 NAG 602 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #