data_5BWC
#
_model_server_result.job_id            hCcSujEzY3nY68EO4o_NIg 
_model_server_result.datetime_utc      '2024-11-28 15:59:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5bwc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":603}' 
#
_entry.id    5BWC 
#
_exptl.entry_id    5BWC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              342.435 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "1,7-HEPTYLENE-BIS-N,N'-SYN-2-PYRIDINIUMALDOXIME" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5BWC 
_cell.length_a            112.152 
_cell.length_b            112.152 
_cell.length_c            137.328 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5BWC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_645 y+1,x-1,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 168.228 -97.126481 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 67 A CYS 67 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf2 A SG CYS 254 A CYS 254 1_555 A SG CYS 265 A CYS 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf3 A SG CYS 402 A CYS 402 1_555 A SG CYS 521 A CYS 521 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
covale ? covale1 A ND2 ASN 416 A ASN 416 1_555 B C1 NAG . A NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
#
_chem_comp.formula           'C19 H26 N4 O2 2' 
_chem_comp.formula_weight    342.435 
_chem_comp.id                HBP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "1,7-HEPTYLENE-BIS-N,N'-SYN-2-PYRIDINIUMALDOXIME" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 N2 HBP sing 129 n n 
C1 C2 HBP sing 130 n n 
C1 H1A HBP sing 131 n n 
C1 H1B HBP sing 132 n n 
C5 C2 HBP sing 133 n n 
C5 C8 HBP sing 134 n n 
C5 H6 HBP sing 135 n n 
C5 H7 HBP sing 136 n n 
O10 N9 HBP sing 137 n n 
O10 H10A HBP sing 138 n n 
N9 C8A HBP doub 139 e n 
C8A C7 HBP sing 140 n n 
C8A H8 HBP sing 141 n n 
C7 C6 HBP doub 142 n y 
C7 N2 HBP sing 143 n y 
C6 C5A HBP sing 144 n y 
C6 H6A HBP sing 145 n n 
C4 C3 HBP sing 146 n y 
C4 C5A HBP doub 147 n y 
C4 H4A HBP sing 148 n n 
C3 N2 HBP doub 149 n y 
C3 H3A HBP sing 150 n n 
C2 H4 HBP sing 151 n n 
C2 H3 HBP sing 152 n n 
C5A H5 HBP sing 153 n n 
C8 C11 HBP sing 154 n n 
C8 H10 HBP sing 155 n n 
C8 H9 HBP sing 156 n n 
C11 C14 HBP sing 157 n n 
C11 H12 HBP sing 158 n n 
C11 H13 HBP sing 159 n n 
C14 C17 HBP sing 160 n n 
C14 H15 HBP sing 161 n n 
C14 H16 HBP sing 162 n n 
C17 N20 HBP sing 163 n n 
C17 H18 HBP sing 164 n n 
C17 H19 HBP sing 165 n n 
N20 C21 HBP sing 166 n y 
N20 C25 HBP doub 167 n y 
C21 C22 HBP doub 168 n y 
C21 H21 HBP sing 169 n n 
C22 C23 HBP sing 170 n y 
C22 H22 HBP sing 171 n n 
C23 C24 HBP doub 172 n y 
C23 H23 HBP sing 173 n n 
C24 C25 HBP sing 174 n y 
C24 H24 HBP sing 175 n n 
C25 C26 HBP sing 176 n n 
C26 N27 HBP doub 177 e n 
C26 H26 HBP sing 178 n n 
N27 O28 HBP sing 179 n n 
O28 H28 HBP sing 180 n n 
#
_atom_sites.entry_id                     5BWC 
_atom_sites.fract_transf_matrix[1][1]    0.008916 
_atom_sites.fract_transf_matrix[1][2]    0.005148 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010296 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007282 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NAG A 1 601 2536 NAG NAG . 
C 2 NAG A 1 602 2537 NAG NAG . 
D 3 HBP A 1 603 406 HBP HBP . 
E 4 HOH A 1 701 36 HOH HOH . 
E 4 HOH A 2 702 110 HOH HOH . 
E 4 HOH A 3 703 80 HOH HOH . 
E 4 HOH A 4 704 6 HOH HOH . 
E 4 HOH A 5 705 76 HOH HOH . 
E 4 HOH A 6 706 32 HOH HOH . 
E 4 HOH A 7 707 78 HOH HOH . 
E 4 HOH A 8 708 48 HOH HOH . 
E 4 HOH A 9 709 104 HOH HOH . 
E 4 HOH A 10 710 53 HOH HOH . 
E 4 HOH A 11 711 39 HOH HOH . 
E 4 HOH A 12 712 91 HOH HOH . 
E 4 HOH A 13 713 14 HOH HOH . 
E 4 HOH A 14 714 82 HOH HOH . 
E 4 HOH A 15 715 43 HOH HOH . 
E 4 HOH A 16 716 101 HOH HOH . 
E 4 HOH A 17 717 68 HOH HOH . 
E 4 HOH A 18 718 54 HOH HOH . 
E 4 HOH A 19 719 25 HOH HOH . 
E 4 HOH A 20 720 1 HOH HOH . 
E 4 HOH A 21 721 113 HOH HOH . 
E 4 HOH A 22 722 24 HOH HOH . 
E 4 HOH A 23 723 26 HOH HOH . 
E 4 HOH A 24 724 69 HOH HOH . 
E 4 HOH A 25 725 51 HOH HOH . 
E 4 HOH A 26 726 59 HOH HOH . 
E 4 HOH A 27 727 7 HOH HOH . 
E 4 HOH A 28 728 100 HOH HOH . 
E 4 HOH A 29 729 96 HOH HOH . 
E 4 HOH A 30 730 93 HOH HOH . 
E 4 HOH A 31 731 46 HOH HOH . 
E 4 HOH A 32 732 72 HOH HOH . 
E 4 HOH A 33 733 108 HOH HOH . 
E 4 HOH A 34 734 33 HOH HOH . 
E 4 HOH A 35 735 95 HOH HOH . 
E 4 HOH A 36 736 79 HOH HOH . 
E 4 HOH A 37 737 22 HOH HOH . 
E 4 HOH A 38 738 10 HOH HOH . 
E 4 HOH A 39 739 83 HOH HOH . 
E 4 HOH A 40 740 74 HOH HOH . 
E 4 HOH A 41 741 77 HOH HOH . 
E 4 HOH A 42 742 37 HOH HOH . 
E 4 HOH A 43 743 45 HOH HOH . 
E 4 HOH A 44 744 21 HOH HOH . 
E 4 HOH A 45 745 49 HOH HOH . 
E 4 HOH A 46 746 8 HOH HOH . 
E 4 HOH A 47 747 75 HOH HOH . 
E 4 HOH A 48 748 17 HOH HOH . 
E 4 HOH A 49 749 3 HOH HOH . 
E 4 HOH A 50 750 23 HOH HOH . 
E 4 HOH A 51 751 2 HOH HOH . 
E 4 HOH A 52 752 73 HOH HOH . 
E 4 HOH A 53 753 44 HOH HOH . 
E 4 HOH A 54 754 84 HOH HOH . 
E 4 HOH A 55 755 65 HOH HOH . 
E 4 HOH A 56 756 42 HOH HOH . 
E 4 HOH A 57 757 29 HOH HOH . 
E 4 HOH A 58 758 81 HOH HOH . 
E 4 HOH A 59 759 28 HOH HOH . 
E 4 HOH A 60 760 105 HOH HOH . 
E 4 HOH A 61 761 60 HOH HOH . 
E 4 HOH A 62 762 67 HOH HOH . 
E 4 HOH A 63 763 47 HOH HOH . 
E 4 HOH A 64 764 103 HOH HOH . 
E 4 HOH A 65 765 41 HOH HOH . 
E 4 HOH A 66 766 94 HOH HOH . 
E 4 HOH A 67 767 56 HOH HOH . 
E 4 HOH A 68 768 58 HOH HOH . 
E 4 HOH A 69 769 99 HOH HOH . 
E 4 HOH A 70 770 40 HOH HOH . 
E 4 HOH A 71 771 38 HOH HOH . 
E 4 HOH A 72 772 102 HOH HOH . 
E 4 HOH A 73 773 55 HOH HOH . 
E 4 HOH A 74 774 5 HOH HOH . 
E 4 HOH A 75 775 35 HOH HOH . 
E 4 HOH A 76 776 27 HOH HOH . 
E 4 HOH A 77 777 16 HOH HOH . 
E 4 HOH A 78 778 112 HOH HOH . 
E 4 HOH A 79 779 63 HOH HOH . 
E 4 HOH A 80 780 111 HOH HOH . 
E 4 HOH A 81 781 62 HOH HOH . 
E 4 HOH A 82 782 97 HOH HOH . 
E 4 HOH A 83 783 98 HOH HOH . 
E 4 HOH A 84 784 18 HOH HOH . 
E 4 HOH A 85 785 30 HOH HOH . 
E 4 HOH A 86 786 109 HOH HOH . 
E 4 HOH A 87 787 85 HOH HOH . 
E 4 HOH A 88 788 12 HOH HOH . 
E 4 HOH A 89 789 106 HOH HOH . 
E 4 HOH A 90 790 13 HOH HOH . 
E 4 HOH A 91 791 20 HOH HOH . 
E 4 HOH A 92 792 52 HOH HOH . 
E 4 HOH A 93 793 31 HOH HOH . 
E 4 HOH A 94 794 19 HOH HOH . 
E 4 HOH A 95 795 114 HOH HOH . 
E 4 HOH A 96 796 90 HOH HOH . 
E 4 HOH A 97 797 15 HOH HOH . 
E 4 HOH A 98 798 4 HOH HOH . 
E 4 HOH A 99 799 64 HOH HOH . 
E 4 HOH A 100 800 88 HOH HOH . 
E 4 HOH A 101 801 34 HOH HOH . 
E 4 HOH A 102 802 89 HOH HOH . 
E 4 HOH A 103 803 70 HOH HOH . 
E 4 HOH A 104 804 50 HOH HOH . 
E 4 HOH A 105 805 61 HOH HOH . 
E 4 HOH A 106 806 86 HOH HOH . 
E 4 HOH A 107 807 66 HOH HOH . 
E 4 HOH A 108 808 71 HOH HOH . 
E 4 HOH A 109 809 11 HOH HOH . 
E 4 HOH A 110 810 9 HOH HOH . 
E 4 HOH A 111 811 107 HOH HOH . 
E 4 HOH A 112 812 87 HOH HOH . 
E 4 HOH A 113 813 92 HOH HOH . 
E 4 HOH A 114 814 57 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 HBP . . . D 3 59.052 -33.126 -1.261 0.8 27.67 ? C1 HBP 603 A 1 
HETATM 2 C C5 HBP . . . D 3 58.193 -35.465 -0.802 0.8 26.2 ? C5 HBP 603 A 1 
HETATM 3 O O10 HBP . . . D 3 62.034 -33.566 -5.332 0.8 30.7 ? O10 HBP 603 A 1 
HETATM 4 N N9 HBP . . . D 3 61.103 -32.605 -4.951 0.8 31.14 ? N9 HBP 603 A 1 
HETATM 5 C C8A HBP . . . D 3 60.47 -32.765 -3.874 0.8 30.41 ? C8A HBP 603 A 1 
HETATM 6 C C7 HBP . . . D 3 59.479 -31.775 -3.386 0.8 29.36 ? C7 HBP 603 A 1 
HETATM 7 C C6 HBP . . . D 3 59.213 -30.639 -4.151 0.8 28.7 ? C6 HBP 603 A 1 
HETATM 8 C C4 HBP . . . D 3 57.663 -29.911 -2.485 0.8 29.3 ? C4 HBP 603 A 1 
HETATM 9 C C3 HBP . . . D 3 57.935 -31.045 -1.725 0.8 29.37 ? C3 HBP 603 A 1 
HETATM 10 N N2 HBP . . . D 3 58.817 -31.964 -2.141 0.8 28.86 ? N2 HBP 603 A 1 
HETATM 11 C C2 HBP . . . D 3 57.877 -34.081 -1.361 0.8 27.05 ? C2 HBP 603 A 1 
HETATM 12 C C5A HBP . . . D 3 58.298 -29.709 -3.701 0.8 28.9 ? C5A HBP 603 A 1 
HETATM 13 C C8 HBP . . . D 3 56.928 -36.307 -0.921 0.8 25.98 ? C8 HBP 603 A 1 
HETATM 14 C C11 HBP . . . D 3 56.555 -37.15 0.289 0.8 25.85 ? C11 HBP 603 A 1 
HETATM 15 C C14 HBP . . . D 3 56.511 -36.37 1.591 0.8 26.13 ? C14 HBP 603 A 1 
HETATM 16 C C17 HBP . . . D 3 55.177 -36.387 2.357 0.8 26.09 ? C17 HBP 603 A 1 
HETATM 17 N N20 HBP . . . D 3 55.285 -37.028 3.689 0.8 26.8 ? N20 HBP 603 A 1 
HETATM 18 C C21 HBP . . . D 3 54.329 -37.924 4.011 0.8 26.61 ? C21 HBP 603 A 1 
HETATM 19 C C22 HBP . . . D 3 54.341 -38.586 5.235 0.8 26.7 ? C22 HBP 603 A 1 
HETATM 20 C C23 HBP . . . D 3 55.338 -38.323 6.158 0.8 27.03 ? C23 HBP 603 A 1 
HETATM 21 C C24 HBP . . . D 3 56.313 -37.394 5.828 0.8 27.28 ? C24 HBP 603 A 1 
HETATM 22 C C25 HBP . . . D 3 56.271 -36.731 4.594 0.8 26.85 ? C25 HBP 603 A 1 
HETATM 23 C C26 HBP . . . D 3 57.391 -35.796 4.287 0.8 26.7 ? C26 HBP 603 A 1 
HETATM 24 N N27 HBP . . . D 3 58.443 -35.789 4.983 0.8 27.11 ? N27 HBP 603 A 1 
HETATM 25 O O28 HBP . . . D 3 59.476 -34.94 4.597 0.8 26.51 ? O28 HBP 603 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           294 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           25 
#