data_5BWM # _model_server_result.job_id t10N4WGv6suEjF5yZ32pkQ _model_server_result.datetime_utc '2024-11-28 11:51:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5bwm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":303}' # _entry.id 5BWM # _exptl.entry_id 5BWM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5BWM _cell.length_a 50.479 _cell.length_b 50.479 _cell.length_c 136.671 _cell.Z_PDB 3 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5BWM _symmetry.cell_setting ? _symmetry.Int_Tables_number 145 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 F N N ? 6 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 19 A THR 19 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc2 A O THR 37 A THR 37 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc3 C O1B GDP . A GDP 201 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.562 ? metalc ? metalc4 C O3B GDP . A GDP 201 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc5 D MG MG . A MG 202 1_555 H O HOH . A HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? metalc ? metalc6 D MG MG . A MG 202 1_555 H O HOH . A HOH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 5BWM _atom_sites.fract_transf_matrix[1][1] 0.01981 _atom_sites.fract_transf_matrix[1][2] 0.011437 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022875 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007317 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GDP A 1 201 200 GDP GDP . D 4 MG A 1 202 1 MG MG . E 5 NAI B 1 301 1 NAI NAI . F 6 EDO B 1 302 1 EDO EDO . G 6 EDO B 1 303 3 EDO EDO . H 7 HOH A 1 301 343 HOH HOH . H 7 HOH A 2 302 443 HOH HOH . H 7 HOH A 3 303 511 HOH HOH . H 7 HOH A 4 304 456 HOH HOH . H 7 HOH A 5 305 406 HOH HOH . H 7 HOH A 6 306 239 HOH HOH . H 7 HOH A 7 307 382 HOH HOH . H 7 HOH A 8 308 347 HOH HOH . H 7 HOH A 9 309 134 HOH HOH . H 7 HOH A 10 310 428 HOH HOH . H 7 HOH A 11 311 358 HOH HOH . H 7 HOH A 12 312 348 HOH HOH . H 7 HOH A 13 313 158 HOH HOH . H 7 HOH A 14 314 384 HOH HOH . H 7 HOH A 15 315 344 HOH HOH . H 7 HOH A 16 316 513 HOH HOH . H 7 HOH A 17 317 345 HOH HOH . H 7 HOH A 18 318 354 HOH HOH . H 7 HOH A 19 319 424 HOH HOH . H 7 HOH A 20 320 342 HOH HOH . H 7 HOH A 21 321 515 HOH HOH . H 7 HOH A 22 322 362 HOH HOH . H 7 HOH A 23 323 504 HOH HOH . H 7 HOH A 24 324 371 HOH HOH . H 7 HOH A 25 325 223 HOH HOH . H 7 HOH A 26 326 372 HOH HOH . H 7 HOH A 27 327 131 HOH HOH . H 7 HOH A 28 328 505 HOH HOH . H 7 HOH A 29 329 373 HOH HOH . H 7 HOH A 30 330 356 HOH HOH . I 7 HOH B 1 401 489 HOH HOH . I 7 HOH B 2 402 512 HOH HOH . I 7 HOH B 3 403 508 HOH HOH . I 7 HOH B 4 404 357 HOH HOH . I 7 HOH B 5 405 351 HOH HOH . I 7 HOH B 6 406 487 HOH HOH . I 7 HOH B 7 407 516 HOH HOH . I 7 HOH B 8 408 402 HOH HOH . I 7 HOH B 9 409 100 HOH HOH . I 7 HOH B 10 410 419 HOH HOH . I 7 HOH B 11 411 492 HOH HOH . I 7 HOH B 12 412 473 HOH HOH . I 7 HOH B 13 413 393 HOH HOH . I 7 HOH B 14 414 509 HOH HOH . I 7 HOH B 15 415 506 HOH HOH . I 7 HOH B 16 416 436 HOH HOH . I 7 HOH B 17 417 319 HOH HOH . I 7 HOH B 18 418 510 HOH HOH . I 7 HOH B 19 419 411 HOH HOH . I 7 HOH B 20 420 427 HOH HOH . I 7 HOH B 21 421 162 HOH HOH . I 7 HOH B 22 422 503 HOH HOH . I 7 HOH B 23 423 507 HOH HOH . I 7 HOH B 24 424 378 HOH HOH . I 7 HOH B 25 425 185 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . G 6 -19.194 28.64 16.934 1 68.24 ? C1 EDO 303 B 1 HETATM 2 O O1 EDO . . . G 6 -20.384 28.158 17.445 1 77.78 ? O1 EDO 303 B 1 HETATM 3 C C2 EDO . . . G 6 -19.448 29.986 16.293 1 77.32 ? C2 EDO 303 B 1 HETATM 4 O O2 EDO . . . G 6 -18.975 31.141 16.999 1 73.45 ? O2 EDO 303 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 239 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 4 #