data_5BWN # _model_server_result.job_id ih6SapJRpk3Wn2eQ8AutnA _model_server_result.datetime_utc '2024-10-18 08:37:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5bwn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 5BWN # _exptl.entry_id 5BWN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5BWN _cell.length_a 44.102 _cell.length_b 54.691 _cell.length_c 117.257 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5BWN _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ARG 4 B ARG 4 1_555 A N MYK 5 B MYK 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A C MYK 5 B MYK 5 1_555 A N SER 6 B SER 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? metalc ? metalc1 B SG CYS 166 A CYS 256 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? metalc ? metalc2 B SG CYS 169 A CYS 259 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.497 ? metalc ? metalc3 B SG CYS 190 A CYS 280 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc4 B SG CYS 193 A CYS 283 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5BWN _atom_sites.fract_transf_matrix[1][1] 0.022675 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018285 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008528 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN A 1 401 1 ZN ZN . D 4 HOH B 1 101 57 HOH HOH . D 4 HOH B 2 102 31 HOH HOH . D 4 HOH B 3 103 69 HOH HOH . D 4 HOH B 4 104 82 HOH HOH . E 4 HOH A 1 501 35 HOH HOH . E 4 HOH A 2 502 83 HOH HOH . E 4 HOH A 3 503 79 HOH HOH . E 4 HOH A 4 504 47 HOH HOH . E 4 HOH A 5 505 51 HOH HOH . E 4 HOH A 6 506 96 HOH HOH . E 4 HOH A 7 507 7 HOH HOH . E 4 HOH A 8 508 94 HOH HOH . E 4 HOH A 9 509 100 HOH HOH . E 4 HOH A 10 510 97 HOH HOH . E 4 HOH A 11 511 15 HOH HOH . E 4 HOH A 12 512 86 HOH HOH . E 4 HOH A 13 513 80 HOH HOH . E 4 HOH A 14 514 91 HOH HOH . E 4 HOH A 15 515 39 HOH HOH . E 4 HOH A 16 516 105 HOH HOH . E 4 HOH A 17 517 52 HOH HOH . E 4 HOH A 18 518 59 HOH HOH . E 4 HOH A 19 519 50 HOH HOH . E 4 HOH A 20 520 18 HOH HOH . E 4 HOH A 21 521 102 HOH HOH . E 4 HOH A 22 522 84 HOH HOH . E 4 HOH A 23 523 61 HOH HOH . E 4 HOH A 24 524 12 HOH HOH . E 4 HOH A 25 525 99 HOH HOH . E 4 HOH A 26 526 4 HOH HOH . E 4 HOH A 27 527 10 HOH HOH . E 4 HOH A 28 528 42 HOH HOH . E 4 HOH A 29 529 55 HOH HOH . E 4 HOH A 30 530 19 HOH HOH . E 4 HOH A 31 531 28 HOH HOH . E 4 HOH A 32 532 1 HOH HOH . E 4 HOH A 33 533 71 HOH HOH . E 4 HOH A 34 534 70 HOH HOH . E 4 HOH A 35 535 54 HOH HOH . E 4 HOH A 36 536 53 HOH HOH . E 4 HOH A 37 537 107 HOH HOH . E 4 HOH A 38 538 32 HOH HOH . E 4 HOH A 39 539 16 HOH HOH . E 4 HOH A 40 540 25 HOH HOH . E 4 HOH A 41 541 30 HOH HOH . E 4 HOH A 42 542 106 HOH HOH . E 4 HOH A 43 543 75 HOH HOH . E 4 HOH A 44 544 24 HOH HOH . E 4 HOH A 45 545 62 HOH HOH . E 4 HOH A 46 546 60 HOH HOH . E 4 HOH A 47 547 11 HOH HOH . E 4 HOH A 48 548 58 HOH HOH . E 4 HOH A 49 549 23 HOH HOH . E 4 HOH A 50 550 65 HOH HOH . E 4 HOH A 51 551 49 HOH HOH . E 4 HOH A 52 552 81 HOH HOH . E 4 HOH A 53 553 64 HOH HOH . E 4 HOH A 54 554 48 HOH HOH . E 4 HOH A 55 555 44 HOH HOH . E 4 HOH A 56 556 56 HOH HOH . E 4 HOH A 57 557 2 HOH HOH . E 4 HOH A 58 558 34 HOH HOH . E 4 HOH A 59 559 78 HOH HOH . E 4 HOH A 60 560 88 HOH HOH . E 4 HOH A 61 561 26 HOH HOH . E 4 HOH A 62 562 63 HOH HOH . E 4 HOH A 63 563 77 HOH HOH . E 4 HOH A 64 564 3 HOH HOH . E 4 HOH A 65 565 40 HOH HOH . E 4 HOH A 66 566 21 HOH HOH . E 4 HOH A 67 567 93 HOH HOH . E 4 HOH A 68 568 85 HOH HOH . E 4 HOH A 69 569 14 HOH HOH . E 4 HOH A 70 570 37 HOH HOH . E 4 HOH A 71 571 38 HOH HOH . E 4 HOH A 72 572 41 HOH HOH . E 4 HOH A 73 573 45 HOH HOH . E 4 HOH A 74 574 29 HOH HOH . E 4 HOH A 75 575 17 HOH HOH . E 4 HOH A 76 576 67 HOH HOH . E 4 HOH A 77 577 36 HOH HOH . E 4 HOH A 78 578 90 HOH HOH . E 4 HOH A 79 579 6 HOH HOH . E 4 HOH A 80 580 13 HOH HOH . E 4 HOH A 81 581 66 HOH HOH . E 4 HOH A 82 582 8 HOH HOH . E 4 HOH A 83 583 22 HOH HOH . E 4 HOH A 84 584 43 HOH HOH . E 4 HOH A 85 585 111 HOH HOH . E 4 HOH A 86 586 5 HOH HOH . E 4 HOH A 87 587 68 HOH HOH . E 4 HOH A 88 588 76 HOH HOH . E 4 HOH A 89 589 33 HOH HOH . E 4 HOH A 90 590 101 HOH HOH . E 4 HOH A 91 591 74 HOH HOH . E 4 HOH A 92 592 98 HOH HOH . E 4 HOH A 93 593 104 HOH HOH . E 4 HOH A 94 594 27 HOH HOH . E 4 HOH A 95 595 109 HOH HOH . E 4 HOH A 96 596 46 HOH HOH . E 4 HOH A 97 597 110 HOH HOH . E 4 HOH A 98 598 9 HOH HOH . E 4 HOH A 99 599 103 HOH HOH . E 4 HOH A 100 600 92 HOH HOH . E 4 HOH A 101 601 89 HOH HOH . E 4 HOH A 102 602 95 HOH HOH . E 4 HOH A 103 603 73 HOH HOH . E 4 HOH A 104 604 108 HOH HOH . E 4 HOH A 105 605 87 HOH HOH . E 4 HOH A 106 606 72 HOH HOH . E 4 HOH A 107 607 20 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 22.72 _atom_site.Cartn_y 24.556 _atom_site.Cartn_z -4.136 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 29.07 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 401 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #