data_5BXG
#
_model_server_result.job_id            5tpSvk7JH2QSlgY0whImIA 
_model_server_result.datetime_utc      '2025-02-05 07:55:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5bxg 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":203}' 
#
_entry.id    5BXG 
#
_exptl.entry_id    5BXG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5BXG 
_cell.length_a            69.108 
_cell.length_b            69.108 
_cell.length_c            87.802 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5BXG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        169 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C LYS 33 A LYS 57 1_555 A N MSE 34 A MSE 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? 
covale ? covale2 A C MSE 34 A MSE 58 1_555 A N GLU 35 A GLU 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale3 A C LYS 160 A LYS 184 1_555 A N MSE 161 A MSE 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale4 A C MSE 161 A MSE 185 1_555 A N LYS 162 A LYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     5BXG 
_atom_sites.fract_transf_matrix[1][1]    0.01447 
_atom_sites.fract_transf_matrix[1][2]    0.008354 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016709 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011389 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 EDO A 1 201 201 EDO EDO . 
C 2 EDO A 1 202 202 EDO EDO . 
D 2 EDO A 1 203 203 EDO EDO . 
E 3 HOH A 1 301 239 HOH HOH . 
E 3 HOH A 2 302 243 HOH HOH . 
E 3 HOH A 3 303 207 HOH HOH . 
E 3 HOH A 4 304 258 HOH HOH . 
E 3 HOH A 5 305 360 HOH HOH . 
E 3 HOH A 6 306 261 HOH HOH . 
E 3 HOH A 7 307 250 HOH HOH . 
E 3 HOH A 8 308 278 HOH HOH . 
E 3 HOH A 9 309 231 HOH HOH . 
E 3 HOH A 10 310 283 HOH HOH . 
E 3 HOH A 11 311 286 HOH HOH . 
E 3 HOH A 12 312 260 HOH HOH . 
E 3 HOH A 13 313 205 HOH HOH . 
E 3 HOH A 14 314 232 HOH HOH . 
E 3 HOH A 15 315 229 HOH HOH . 
E 3 HOH A 16 316 235 HOH HOH . 
E 3 HOH A 17 317 230 HOH HOH . 
E 3 HOH A 18 318 265 HOH HOH . 
E 3 HOH A 19 319 247 HOH HOH . 
E 3 HOH A 20 320 292 HOH HOH . 
E 3 HOH A 21 321 252 HOH HOH . 
E 3 HOH A 22 322 233 HOH HOH . 
E 3 HOH A 23 323 215 HOH HOH . 
E 3 HOH A 24 324 204 HOH HOH . 
E 3 HOH A 25 325 206 HOH HOH . 
E 3 HOH A 26 326 244 HOH HOH . 
E 3 HOH A 27 327 228 HOH HOH . 
E 3 HOH A 28 328 434 HOH HOH . 
E 3 HOH A 29 329 306 HOH HOH . 
E 3 HOH A 30 330 304 HOH HOH . 
E 3 HOH A 31 331 223 HOH HOH . 
E 3 HOH A 32 332 256 HOH HOH . 
E 3 HOH A 33 333 253 HOH HOH . 
E 3 HOH A 34 334 289 HOH HOH . 
E 3 HOH A 35 335 236 HOH HOH . 
E 3 HOH A 36 336 271 HOH HOH . 
E 3 HOH A 37 337 281 HOH HOH . 
E 3 HOH A 38 338 324 HOH HOH . 
E 3 HOH A 39 339 259 HOH HOH . 
E 3 HOH A 40 340 262 HOH HOH . 
E 3 HOH A 41 341 351 HOH HOH . 
E 3 HOH A 42 342 277 HOH HOH . 
E 3 HOH A 43 343 242 HOH HOH . 
E 3 HOH A 44 344 414 HOH HOH . 
E 3 HOH A 45 345 403 HOH HOH . 
E 3 HOH A 46 346 224 HOH HOH . 
E 3 HOH A 47 347 356 HOH HOH . 
E 3 HOH A 48 348 301 HOH HOH . 
E 3 HOH A 49 349 251 HOH HOH . 
E 3 HOH A 50 350 318 HOH HOH . 
E 3 HOH A 51 351 325 HOH HOH . 
E 3 HOH A 52 352 272 HOH HOH . 
E 3 HOH A 53 353 315 HOH HOH . 
E 3 HOH A 54 354 293 HOH HOH . 
E 3 HOH A 55 355 310 HOH HOH . 
E 3 HOH A 56 356 341 HOH HOH . 
E 3 HOH A 57 357 327 HOH HOH . 
E 3 HOH A 58 358 217 HOH HOH . 
E 3 HOH A 59 359 361 HOH HOH . 
E 3 HOH A 60 360 432 HOH HOH . 
E 3 HOH A 61 361 322 HOH HOH . 
E 3 HOH A 62 362 214 HOH HOH . 
E 3 HOH A 63 363 381 HOH HOH . 
E 3 HOH A 64 364 326 HOH HOH . 
E 3 HOH A 65 365 270 HOH HOH . 
E 3 HOH A 66 366 285 HOH HOH . 
E 3 HOH A 67 367 443 HOH HOH . 
E 3 HOH A 68 368 255 HOH HOH . 
E 3 HOH A 69 369 299 HOH HOH . 
E 3 HOH A 70 370 346 HOH HOH . 
E 3 HOH A 71 371 343 HOH HOH . 
E 3 HOH A 72 372 445 HOH HOH . 
E 3 HOH A 73 373 314 HOH HOH . 
E 3 HOH A 74 374 234 HOH HOH . 
E 3 HOH A 75 375 441 HOH HOH . 
E 3 HOH A 76 376 383 HOH HOH . 
E 3 HOH A 77 377 240 HOH HOH . 
E 3 HOH A 78 378 316 HOH HOH . 
E 3 HOH A 79 379 384 HOH HOH . 
E 3 HOH A 80 380 312 HOH HOH . 
E 3 HOH A 81 381 222 HOH HOH . 
E 3 HOH A 82 382 333 HOH HOH . 
E 3 HOH A 83 383 397 HOH HOH . 
E 3 HOH A 84 384 348 HOH HOH . 
E 3 HOH A 85 385 331 HOH HOH . 
E 3 HOH A 86 386 245 HOH HOH . 
E 3 HOH A 87 387 254 HOH HOH . 
E 3 HOH A 88 388 282 HOH HOH . 
E 3 HOH A 89 389 249 HOH HOH . 
E 3 HOH A 90 390 216 HOH HOH . 
E 3 HOH A 91 391 275 HOH HOH . 
E 3 HOH A 92 392 284 HOH HOH . 
E 3 HOH A 93 393 367 HOH HOH . 
E 3 HOH A 94 394 246 HOH HOH . 
E 3 HOH A 95 395 238 HOH HOH . 
E 3 HOH A 96 396 376 HOH HOH . 
E 3 HOH A 97 397 338 HOH HOH . 
E 3 HOH A 98 398 213 HOH HOH . 
E 3 HOH A 99 399 317 HOH HOH . 
E 3 HOH A 100 400 444 HOH HOH . 
E 3 HOH A 101 401 309 HOH HOH . 
E 3 HOH A 102 402 307 HOH HOH . 
E 3 HOH A 103 403 212 HOH HOH . 
E 3 HOH A 104 404 393 HOH HOH . 
E 3 HOH A 105 405 342 HOH HOH . 
E 3 HOH A 106 406 248 HOH HOH . 
E 3 HOH A 107 407 446 HOH HOH . 
E 3 HOH A 108 408 305 HOH HOH . 
E 3 HOH A 109 409 279 HOH HOH . 
E 3 HOH A 110 410 430 HOH HOH . 
E 3 HOH A 111 411 380 HOH HOH . 
E 3 HOH A 112 412 319 HOH HOH . 
E 3 HOH A 113 413 388 HOH HOH . 
E 3 HOH A 114 414 288 HOH HOH . 
E 3 HOH A 115 415 221 HOH HOH . 
E 3 HOH A 116 416 266 HOH HOH . 
E 3 HOH A 117 417 297 HOH HOH . 
E 3 HOH A 118 418 226 HOH HOH . 
E 3 HOH A 119 419 354 HOH HOH . 
E 3 HOH A 120 420 287 HOH HOH . 
E 3 HOH A 121 421 335 HOH HOH . 
E 3 HOH A 122 422 257 HOH HOH . 
E 3 HOH A 123 423 225 HOH HOH . 
E 3 HOH A 124 424 220 HOH HOH . 
E 3 HOH A 125 425 269 HOH HOH . 
E 3 HOH A 126 426 398 HOH HOH . 
E 3 HOH A 127 427 390 HOH HOH . 
E 3 HOH A 128 428 294 HOH HOH . 
E 3 HOH A 129 429 365 HOH HOH . 
E 3 HOH A 130 430 379 HOH HOH . 
E 3 HOH A 131 431 264 HOH HOH . 
E 3 HOH A 132 432 263 HOH HOH . 
E 3 HOH A 133 433 386 HOH HOH . 
E 3 HOH A 134 434 345 HOH HOH . 
E 3 HOH A 135 435 227 HOH HOH . 
E 3 HOH A 136 436 308 HOH HOH . 
E 3 HOH A 137 437 363 HOH HOH . 
E 3 HOH A 138 438 237 HOH HOH . 
E 3 HOH A 139 439 241 HOH HOH . 
E 3 HOH A 140 440 421 HOH HOH . 
E 3 HOH A 141 441 268 HOH HOH . 
E 3 HOH A 142 442 321 HOH HOH . 
E 3 HOH A 143 443 407 HOH HOH . 
E 3 HOH A 144 444 406 HOH HOH . 
E 3 HOH A 145 445 311 HOH HOH . 
E 3 HOH A 146 446 401 HOH HOH . 
E 3 HOH A 147 447 368 HOH HOH . 
E 3 HOH A 148 448 442 HOH HOH . 
E 3 HOH A 149 449 364 HOH HOH . 
E 3 HOH A 150 450 339 HOH HOH . 
E 3 HOH A 151 451 408 HOH HOH . 
E 3 HOH A 152 452 273 HOH HOH . 
E 3 HOH A 153 453 371 HOH HOH . 
E 3 HOH A 154 454 420 HOH HOH . 
E 3 HOH A 155 455 274 HOH HOH . 
E 3 HOH A 156 456 418 HOH HOH . 
E 3 HOH A 157 457 357 HOH HOH . 
E 3 HOH A 158 458 437 HOH HOH . 
E 3 HOH A 159 459 382 HOH HOH . 
E 3 HOH A 160 460 313 HOH HOH . 
E 3 HOH A 161 461 412 HOH HOH . 
E 3 HOH A 162 462 337 HOH HOH . 
E 3 HOH A 163 463 295 HOH HOH . 
E 3 HOH A 164 464 332 HOH HOH . 
E 3 HOH A 165 465 218 HOH HOH . 
E 3 HOH A 166 466 340 HOH HOH . 
E 3 HOH A 167 467 344 HOH HOH . 
E 3 HOH A 168 468 210 HOH HOH . 
E 3 HOH A 169 469 276 HOH HOH . 
E 3 HOH A 170 470 323 HOH HOH . 
E 3 HOH A 171 471 347 HOH HOH . 
E 3 HOH A 172 472 425 HOH HOH . 
E 3 HOH A 173 473 329 HOH HOH . 
E 3 HOH A 174 474 369 HOH HOH . 
E 3 HOH A 175 475 399 HOH HOH . 
E 3 HOH A 176 476 358 HOH HOH . 
E 3 HOH A 177 477 436 HOH HOH . 
E 3 HOH A 178 478 409 HOH HOH . 
E 3 HOH A 179 479 211 HOH HOH . 
E 3 HOH A 180 480 411 HOH HOH . 
E 3 HOH A 181 481 427 HOH HOH . 
E 3 HOH A 182 482 438 HOH HOH . 
E 3 HOH A 183 483 291 HOH HOH . 
E 3 HOH A 184 484 440 HOH HOH . 
E 3 HOH A 185 485 374 HOH HOH . 
E 3 HOH A 186 486 435 HOH HOH . 
E 3 HOH A 187 487 366 HOH HOH . 
E 3 HOH A 188 488 280 HOH HOH . 
E 3 HOH A 189 489 385 HOH HOH . 
E 3 HOH A 190 490 320 HOH HOH . 
E 3 HOH A 191 491 429 HOH HOH . 
E 3 HOH A 192 492 431 HOH HOH . 
E 3 HOH A 193 493 208 HOH HOH . 
E 3 HOH A 194 494 410 HOH HOH . 
E 3 HOH A 195 495 389 HOH HOH . 
E 3 HOH A 196 496 328 HOH HOH . 
E 3 HOH A 197 497 375 HOH HOH . 
E 3 HOH A 198 498 413 HOH HOH . 
E 3 HOH A 199 499 267 HOH HOH . 
E 3 HOH A 200 500 352 HOH HOH . 
E 3 HOH A 201 501 424 HOH HOH . 
E 3 HOH A 202 502 428 HOH HOH . 
E 3 HOH A 203 503 400 HOH HOH . 
E 3 HOH A 204 504 334 HOH HOH . 
E 3 HOH A 205 505 391 HOH HOH . 
E 3 HOH A 206 506 419 HOH HOH . 
E 3 HOH A 207 507 296 HOH HOH . 
E 3 HOH A 208 508 423 HOH HOH . 
E 3 HOH A 209 509 378 HOH HOH . 
E 3 HOH A 210 510 336 HOH HOH . 
E 3 HOH A 211 511 353 HOH HOH . 
E 3 HOH A 212 512 396 HOH HOH . 
E 3 HOH A 213 513 303 HOH HOH . 
E 3 HOH A 214 514 290 HOH HOH . 
E 3 HOH A 215 515 433 HOH HOH . 
E 3 HOH A 216 516 422 HOH HOH . 
E 3 HOH A 217 517 355 HOH HOH . 
E 3 HOH A 218 518 394 HOH HOH . 
E 3 HOH A 219 519 302 HOH HOH . 
E 3 HOH A 220 520 362 HOH HOH . 
E 3 HOH A 221 521 415 HOH HOH . 
E 3 HOH A 222 522 350 HOH HOH . 
E 3 HOH A 223 523 372 HOH HOH . 
E 3 HOH A 224 524 209 HOH HOH . 
E 3 HOH A 225 525 392 HOH HOH . 
E 3 HOH A 226 526 377 HOH HOH . 
E 3 HOH A 227 527 300 HOH HOH . 
E 3 HOH A 228 528 370 HOH HOH . 
E 3 HOH A 229 529 395 HOH HOH . 
E 3 HOH A 230 530 402 HOH HOH . 
E 3 HOH A 231 531 330 HOH HOH . 
E 3 HOH A 232 532 219 HOH HOH . 
E 3 HOH A 233 533 359 HOH HOH . 
E 3 HOH A 234 534 387 HOH HOH . 
E 3 HOH A 235 535 298 HOH HOH . 
E 3 HOH A 236 536 405 HOH HOH . 
E 3 HOH A 237 537 404 HOH HOH . 
E 3 HOH A 238 538 373 HOH HOH . 
E 3 HOH A 239 539 417 HOH HOH . 
E 3 HOH A 240 540 426 HOH HOH . 
E 3 HOH A 241 541 349 HOH HOH . 
E 3 HOH A 242 542 416 HOH HOH . 
E 3 HOH A 243 543 439 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . D 2 26.961 25.626 -6.629 1 80.87 ? C1 EDO 203 A 1 
HETATM 2 O O1 EDO . . . D 2 26.149 24.747 -7.384 1 80.6 ? O1 EDO 203 A 1 
HETATM 3 C C2 EDO . . . D 2 28.453 25.257 -6.826 1 82.15 ? C2 EDO 203 A 1 
HETATM 4 O O2 EDO . . . D 2 28.868 25.576 -8.149 1 82.55 ? O2 EDO 203 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           250 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#