data_5BXJ # _model_server_result.job_id H4N5I33hJ3jHFI36x-pCbw _model_server_result.datetime_utc '2024-11-05 01:02:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5bxj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5BXJ # _exptl.entry_id 5BXJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 139.109 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description P-NITROPHENOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5BXJ _cell.length_a 42.127 _cell.length_b 53.72 _cell.length_c 56.048 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5BXJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H5 N O3' _chem_comp.formula_weight 139.109 _chem_comp.id NPO _chem_comp.mon_nstd_flag . _chem_comp.name P-NITROPHENOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NPO doub 237 n y C1 C6 NPO sing 238 n y C1 N1 NPO sing 239 n n C2 C3 NPO sing 240 n y C2 H2 NPO sing 241 n n C3 C4 NPO doub 242 n y C3 H3 NPO sing 243 n n C4 C5 NPO sing 244 n y C4 OH NPO sing 245 n n C5 C6 NPO doub 246 n y C5 H5 NPO sing 247 n n C6 H6 NPO sing 248 n n OH HO NPO sing 249 n n N1 O2 NPO sing 250 n n N1 O3 NPO doub 251 n n # _atom_sites.entry_id 5BXJ _atom_sites.fract_transf_matrix[1][1] 0.023738 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018615 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017842 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NPO A 1 201 1 NPO PNP . C 3 HOH A 1 301 73 HOH HOH . C 3 HOH A 2 302 44 HOH HOH . C 3 HOH A 3 303 11 HOH HOH . C 3 HOH A 4 304 108 HOH HOH . C 3 HOH A 5 305 54 HOH HOH . C 3 HOH A 6 306 37 HOH HOH . C 3 HOH A 7 307 19 HOH HOH . C 3 HOH A 8 308 29 HOH HOH . C 3 HOH A 9 309 84 HOH HOH . C 3 HOH A 10 310 95 HOH HOH . C 3 HOH A 11 311 70 HOH HOH . C 3 HOH A 12 312 3 HOH HOH . C 3 HOH A 13 313 125 HOH HOH . C 3 HOH A 14 314 52 HOH HOH . C 3 HOH A 15 315 79 HOH HOH . C 3 HOH A 16 316 129 HOH HOH . C 3 HOH A 17 317 47 HOH HOH . C 3 HOH A 18 318 4 HOH HOH . C 3 HOH A 19 319 34 HOH HOH . C 3 HOH A 20 320 62 HOH HOH . C 3 HOH A 21 321 41 HOH HOH . C 3 HOH A 22 322 31 HOH HOH . C 3 HOH A 23 323 20 HOH HOH . C 3 HOH A 24 324 25 HOH HOH . C 3 HOH A 25 325 123 HOH HOH . C 3 HOH A 26 326 35 HOH HOH . C 3 HOH A 27 327 61 HOH HOH . C 3 HOH A 28 328 71 HOH HOH . C 3 HOH A 29 329 50 HOH HOH . C 3 HOH A 30 330 43 HOH HOH . C 3 HOH A 31 331 13 HOH HOH . C 3 HOH A 32 332 135 HOH HOH . C 3 HOH A 33 333 33 HOH HOH . C 3 HOH A 34 334 15 HOH HOH . C 3 HOH A 35 335 121 HOH HOH . C 3 HOH A 36 336 128 HOH HOH . C 3 HOH A 37 337 110 HOH HOH . C 3 HOH A 38 338 39 HOH HOH . C 3 HOH A 39 339 65 HOH HOH . C 3 HOH A 40 340 83 HOH HOH . C 3 HOH A 41 341 66 HOH HOH . C 3 HOH A 42 342 59 HOH HOH . C 3 HOH A 43 343 5 HOH HOH . C 3 HOH A 44 344 12 HOH HOH . C 3 HOH A 45 345 23 HOH HOH . C 3 HOH A 46 346 48 HOH HOH . C 3 HOH A 47 347 78 HOH HOH . C 3 HOH A 48 348 22 HOH HOH . C 3 HOH A 49 349 21 HOH HOH . C 3 HOH A 50 350 92 HOH HOH . C 3 HOH A 51 351 69 HOH HOH . C 3 HOH A 52 352 89 HOH HOH . C 3 HOH A 53 353 63 HOH HOH . C 3 HOH A 54 354 72 HOH HOH . C 3 HOH A 55 355 58 HOH HOH . C 3 HOH A 56 356 55 HOH HOH . C 3 HOH A 57 357 74 HOH HOH . C 3 HOH A 58 358 76 HOH HOH . C 3 HOH A 59 359 130 HOH HOH . C 3 HOH A 60 360 137 HOH HOH . C 3 HOH A 61 361 6 HOH HOH . C 3 HOH A 62 362 118 HOH HOH . C 3 HOH A 63 363 8 HOH HOH . C 3 HOH A 64 364 14 HOH HOH . C 3 HOH A 65 365 80 HOH HOH . C 3 HOH A 66 366 10 HOH HOH . C 3 HOH A 67 367 120 HOH HOH . C 3 HOH A 68 368 132 HOH HOH . C 3 HOH A 69 369 2 HOH HOH . C 3 HOH A 70 370 97 HOH HOH . C 3 HOH A 71 371 122 HOH HOH . C 3 HOH A 72 372 27 HOH HOH . C 3 HOH A 73 373 32 HOH HOH . C 3 HOH A 74 374 49 HOH HOH . C 3 HOH A 75 375 56 HOH HOH . C 3 HOH A 76 376 46 HOH HOH . C 3 HOH A 77 377 67 HOH HOH . C 3 HOH A 78 378 98 HOH HOH . C 3 HOH A 79 379 99 HOH HOH . C 3 HOH A 80 380 45 HOH HOH . C 3 HOH A 81 381 1 HOH HOH . C 3 HOH A 82 382 116 HOH HOH . C 3 HOH A 83 383 94 HOH HOH . C 3 HOH A 84 384 109 HOH HOH . C 3 HOH A 85 385 53 HOH HOH . C 3 HOH A 86 386 93 HOH HOH . C 3 HOH A 87 387 16 HOH HOH . C 3 HOH A 88 388 36 HOH HOH . C 3 HOH A 89 389 107 HOH HOH . C 3 HOH A 90 390 104 HOH HOH . C 3 HOH A 91 391 101 HOH HOH . C 3 HOH A 92 392 38 HOH HOH . C 3 HOH A 93 393 17 HOH HOH . C 3 HOH A 94 394 100 HOH HOH . C 3 HOH A 95 395 60 HOH HOH . C 3 HOH A 96 396 42 HOH HOH . C 3 HOH A 97 397 102 HOH HOH . C 3 HOH A 98 398 68 HOH HOH . C 3 HOH A 99 399 82 HOH HOH . C 3 HOH A 100 400 26 HOH HOH . C 3 HOH A 101 401 81 HOH HOH . C 3 HOH A 102 402 28 HOH HOH . C 3 HOH A 103 403 7 HOH HOH . C 3 HOH A 104 404 91 HOH HOH . C 3 HOH A 105 405 127 HOH HOH . C 3 HOH A 106 406 114 HOH HOH . C 3 HOH A 107 407 111 HOH HOH . C 3 HOH A 108 408 115 HOH HOH . C 3 HOH A 109 409 134 HOH HOH . C 3 HOH A 110 410 64 HOH HOH . C 3 HOH A 111 411 105 HOH HOH . C 3 HOH A 112 412 51 HOH HOH . C 3 HOH A 113 413 106 HOH HOH . C 3 HOH A 114 414 119 HOH HOH . C 3 HOH A 115 415 96 HOH HOH . C 3 HOH A 116 416 117 HOH HOH . C 3 HOH A 117 417 126 HOH HOH . C 3 HOH A 118 418 131 HOH HOH . C 3 HOH A 119 419 103 HOH HOH . C 3 HOH A 120 420 87 HOH HOH . C 3 HOH A 121 421 86 HOH HOH . C 3 HOH A 122 422 75 HOH HOH . C 3 HOH A 123 423 57 HOH HOH . C 3 HOH A 124 424 40 HOH HOH . C 3 HOH A 125 425 18 HOH HOH . C 3 HOH A 126 426 133 HOH HOH . C 3 HOH A 127 427 77 HOH HOH . C 3 HOH A 128 428 88 HOH HOH . C 3 HOH A 129 429 113 HOH HOH . C 3 HOH A 130 430 136 HOH HOH . C 3 HOH A 131 431 85 HOH HOH . C 3 HOH A 132 432 90 HOH HOH . C 3 HOH A 133 433 112 HOH HOH . C 3 HOH A 134 434 138 HOH HOH . C 3 HOH A 135 435 24 HOH HOH . C 3 HOH A 136 436 30 HOH HOH . C 3 HOH A 137 437 124 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NPO . . . B 2 -9.274 -11.933 -17.049 1 33.66 ? C1 NPO 201 A 1 HETATM 2 C C2 NPO . . . B 2 -9.131 -12.279 -18.384 1 52.96 ? C2 NPO 201 A 1 HETATM 3 C C3 NPO . . . B 2 -8.404 -11.489 -19.262 1 54.69 ? C3 NPO 201 A 1 HETATM 4 C C4 NPO . . . B 2 -7.8 -10.33 -18.809 1 76.86 ? C4 NPO 201 A 1 HETATM 5 C C5 NPO . . . B 2 -7.939 -9.972 -17.479 1 53.74 ? C5 NPO 201 A 1 HETATM 6 C C6 NPO . . . B 2 -8.663 -10.77 -16.6 1 29.95 ? C6 NPO 201 A 1 HETATM 7 O OH NPO . . . B 2 -7.059 -9.525 -19.694 1 62.49 ? OH NPO 201 A 1 HETATM 8 N N1 NPO . . . B 2 -10.04 -12.761 -16.17 1 55.25 ? N1 NPO 201 A 1 HETATM 9 O O2 NPO . . . B 2 -9.47 -13.385 -15.288 1 59.16 ? O2 NPO 201 A 1 HETATM 10 O O3 NPO . . . B 2 -11.411 -12.873 -16.299 1 23.59 ? O3 NPO 201 A 1 HETATM 11 H H2 NPO . . . B 2 -9.555 -13.093 -18.715 1 63.55 ? H2 NPO 201 A 1 HETATM 12 H H3 NPO . . . B 2 -8.316 -11.752 -20.197 1 65.63 ? H3 NPO 201 A 1 HETATM 13 H H5 NPO . . . B 2 -7.513 -9.158 -17.151 1 64.49 ? H5 NPO 201 A 1 HETATM 14 H H6 NPO . . . B 2 -8.755 -10.503 -15.666 1 35.93 ? H6 NPO 201 A 1 # _model_server_stats.io_time_ms 96 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 223 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 14 #