data_5BXV # _model_server_result.job_id MJwaaokq0xQvcDuBeh4-eQ _model_server_result.datetime_utc '2024-11-25 09:14:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5bxv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":301}' # _entry.id 5BXV # _exptl.entry_id 5BXV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 538.215 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "7-METHYL-GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 112.43 _cell.angle_gamma 90 _cell.entry_id 5BXV _cell.length_a 67.607 _cell.length_b 67.83 _cell.length_c 79.084 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5BXV _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,G,H 1 1 C,D,F,I,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # _chem_comp.formula 'C11 H19 N5 O14 P3 1' _chem_comp.formula_weight 538.215 _chem_comp.id MGP _chem_comp.mon_nstd_flag . _chem_comp.name "7-METHYL-GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A MGP sing 237 n n PA O2A MGP doub 238 n n PA O3A MGP sing 239 n n PA O5' MGP sing 240 n n O3A PB MGP sing 241 n n O5' C5' MGP sing 242 n n PB O1B MGP sing 243 n n PB O2B MGP doub 244 n n PB O3B MGP sing 245 n n O3B PC MGP sing 246 n n PC O1C MGP sing 247 n n PC O2C MGP doub 248 n n PC O3C MGP sing 249 n n C5' C4' MGP sing 250 n n C5' H5' MGP sing 251 n n C5' "H5'A" MGP sing 252 n n C4' O4' MGP sing 253 n n C4' C3' MGP sing 254 n n C4' H4' MGP sing 255 n n O4' C1' MGP sing 256 n n C3' O3' MGP sing 257 n n C3' C2' MGP sing 258 n n C3' H3' MGP sing 259 n n O3' HO3' MGP sing 260 n n C2' O2' MGP sing 261 n n C2' C1' MGP sing 262 n n C2' H2' MGP sing 263 n n O2' HO2' MGP sing 264 n n C1' N9 MGP sing 265 n n C1' H1' MGP sing 266 n n N9 C8 MGP sing 267 n y N9 C4 MGP sing 268 n y C8 N7 MGP doub 269 n y C8 H8 MGP sing 270 n n N7 CM7 MGP sing 271 n n N7 C5 MGP sing 272 n y CM7 HM7 MGP sing 273 n n CM7 HM7A MGP sing 274 n n CM7 HM7B MGP sing 275 n n C5 C6 MGP sing 276 n n C5 C4 MGP doub 277 n y C6 O6 MGP doub 278 n n C6 N1 MGP sing 279 n n N1 C2 MGP sing 280 n n N1 HN1 MGP sing 281 n n C2 N2 MGP sing 282 n n C2 N3 MGP doub 283 n n N2 HN2 MGP sing 284 n n N2 HN2A MGP sing 285 n n N3 C4 MGP sing 286 n n O1A H16 MGP sing 287 n n O1B H17 MGP sing 288 n n O1C H18 MGP sing 289 n n O3C H19 MGP sing 290 n n # _atom_sites.entry_id 5BXV _atom_sites.fract_transf_matrix[1][1] 0.014791 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006105 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014743 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013679 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 MGP A 1 301 220 MGP MGT . F 3 MGP C 1 301 220 MGP MGT . G 4 HOH A 1 401 112 HOH HOH . G 4 HOH A 2 402 187 HOH HOH . G 4 HOH A 3 403 150 HOH HOH . G 4 HOH A 4 404 210 HOH HOH . G 4 HOH A 5 405 122 HOH HOH . G 4 HOH A 6 406 56 HOH HOH . G 4 HOH A 7 407 47 HOH HOH . G 4 HOH A 8 408 103 HOH HOH . G 4 HOH A 9 409 45 HOH HOH . G 4 HOH A 10 410 130 HOH HOH . G 4 HOH A 11 411 118 HOH HOH . G 4 HOH A 12 412 132 HOH HOH . G 4 HOH A 13 413 157 HOH HOH . G 4 HOH A 14 414 16 HOH HOH . G 4 HOH A 15 415 116 HOH HOH . G 4 HOH A 16 416 200 HOH HOH . G 4 HOH A 17 417 117 HOH HOH . G 4 HOH A 18 418 4 HOH HOH . G 4 HOH A 19 419 33 HOH HOH . G 4 HOH A 20 420 17 HOH HOH . G 4 HOH A 21 421 26 HOH HOH . G 4 HOH A 22 422 74 HOH HOH . G 4 HOH A 23 423 59 HOH HOH . G 4 HOH A 24 424 48 HOH HOH . G 4 HOH A 25 425 15 HOH HOH . G 4 HOH A 26 426 1 HOH HOH . G 4 HOH A 27 427 141 HOH HOH . G 4 HOH A 28 428 174 HOH HOH . G 4 HOH A 29 429 110 HOH HOH . G 4 HOH A 30 430 175 HOH HOH . G 4 HOH A 31 431 18 HOH HOH . G 4 HOH A 32 432 2 HOH HOH . G 4 HOH A 33 433 42 HOH HOH . G 4 HOH A 34 434 9 HOH HOH . G 4 HOH A 35 435 28 HOH HOH . G 4 HOH A 36 436 3 HOH HOH . G 4 HOH A 37 437 165 HOH HOH . G 4 HOH A 38 438 107 HOH HOH . G 4 HOH A 39 439 35 HOH HOH . G 4 HOH A 40 440 75 HOH HOH . G 4 HOH A 41 441 21 HOH HOH . G 4 HOH A 42 442 162 HOH HOH . G 4 HOH A 43 443 72 HOH HOH . G 4 HOH A 44 444 108 HOH HOH . G 4 HOH A 45 445 176 HOH HOH . G 4 HOH A 46 446 114 HOH HOH . G 4 HOH A 47 447 105 HOH HOH . G 4 HOH A 48 448 62 HOH HOH . G 4 HOH A 49 449 166 HOH HOH . G 4 HOH A 50 450 151 HOH HOH . G 4 HOH A 51 451 36 HOH HOH . G 4 HOH A 52 452 85 HOH HOH . G 4 HOH A 53 453 135 HOH HOH . G 4 HOH A 54 454 43 HOH HOH . G 4 HOH A 55 455 137 HOH HOH . G 4 HOH A 56 456 129 HOH HOH . G 4 HOH A 57 457 50 HOH HOH . G 4 HOH A 58 458 163 HOH HOH . G 4 HOH A 59 459 46 HOH HOH . G 4 HOH A 60 460 13 HOH HOH . G 4 HOH A 61 461 138 HOH HOH . G 4 HOH A 62 462 158 HOH HOH . G 4 HOH A 63 463 44 HOH HOH . G 4 HOH A 64 464 81 HOH HOH . G 4 HOH A 65 465 125 HOH HOH . G 4 HOH A 66 466 131 HOH HOH . G 4 HOH A 67 467 178 HOH HOH . G 4 HOH A 68 468 63 HOH HOH . G 4 HOH A 69 469 90 HOH HOH . G 4 HOH A 70 470 153 HOH HOH . G 4 HOH A 71 471 211 HOH HOH . G 4 HOH A 72 472 160 HOH HOH . G 4 HOH A 73 473 180 HOH HOH . G 4 HOH A 74 474 29 HOH HOH . G 4 HOH A 75 475 25 HOH HOH . G 4 HOH A 76 476 195 HOH HOH . G 4 HOH A 77 477 54 HOH HOH . G 4 HOH A 78 478 212 HOH HOH . G 4 HOH A 79 479 167 HOH HOH . G 4 HOH A 80 480 207 HOH HOH . G 4 HOH A 81 481 82 HOH HOH . G 4 HOH A 82 482 30 HOH HOH . G 4 HOH A 83 483 203 HOH HOH . G 4 HOH A 84 484 37 HOH HOH . G 4 HOH A 85 485 185 HOH HOH . G 4 HOH A 86 486 86 HOH HOH . G 4 HOH A 87 487 39 HOH HOH . G 4 HOH A 88 488 89 HOH HOH . G 4 HOH A 89 489 190 HOH HOH . G 4 HOH A 90 490 87 HOH HOH . G 4 HOH A 91 491 123 HOH HOH . G 4 HOH A 92 492 66 HOH HOH . G 4 HOH A 93 493 208 HOH HOH . G 4 HOH A 94 494 121 HOH HOH . G 4 HOH A 95 495 206 HOH HOH . G 4 HOH A 96 496 181 HOH HOH . G 4 HOH A 97 497 101 HOH HOH . G 4 HOH A 98 498 205 HOH HOH . G 4 HOH A 99 499 127 HOH HOH . H 4 HOH B 1 101 209 HOH HOH . H 4 HOH B 2 102 106 HOH HOH . H 4 HOH B 3 103 217 HOH HOH . H 4 HOH B 4 104 10 HOH HOH . H 4 HOH B 5 105 76 HOH HOH . H 4 HOH B 6 106 55 HOH HOH . H 4 HOH B 7 107 184 HOH HOH . H 4 HOH B 8 108 97 HOH HOH . H 4 HOH B 9 109 69 HOH HOH . H 4 HOH B 10 110 61 HOH HOH . H 4 HOH B 11 111 201 HOH HOH . H 4 HOH B 12 112 98 HOH HOH . H 4 HOH B 13 113 119 HOH HOH . H 4 HOH B 14 114 169 HOH HOH . H 4 HOH B 15 115 199 HOH HOH . I 4 HOH C 1 401 155 HOH HOH . I 4 HOH C 2 402 198 HOH HOH . I 4 HOH C 3 403 115 HOH HOH . I 4 HOH C 4 404 111 HOH HOH . I 4 HOH C 5 405 92 HOH HOH . I 4 HOH C 6 406 67 HOH HOH . I 4 HOH C 7 407 120 HOH HOH . I 4 HOH C 8 408 19 HOH HOH . I 4 HOH C 9 409 134 HOH HOH . I 4 HOH C 10 410 124 HOH HOH . I 4 HOH C 11 411 139 HOH HOH . I 4 HOH C 12 412 12 HOH HOH . I 4 HOH C 13 413 6 HOH HOH . I 4 HOH C 14 414 109 HOH HOH . I 4 HOH C 15 415 84 HOH HOH . I 4 HOH C 16 416 5 HOH HOH . I 4 HOH C 17 417 64 HOH HOH . I 4 HOH C 18 418 57 HOH HOH . I 4 HOH C 19 419 40 HOH HOH . I 4 HOH C 20 420 164 HOH HOH . I 4 HOH C 21 421 20 HOH HOH . I 4 HOH C 22 422 11 HOH HOH . I 4 HOH C 23 423 31 HOH HOH . I 4 HOH C 24 424 147 HOH HOH . I 4 HOH C 25 425 14 HOH HOH . I 4 HOH C 26 426 71 HOH HOH . I 4 HOH C 27 427 102 HOH HOH . I 4 HOH C 28 428 142 HOH HOH . I 4 HOH C 29 429 104 HOH HOH . I 4 HOH C 30 430 183 HOH HOH . I 4 HOH C 31 431 186 HOH HOH . I 4 HOH C 32 432 24 HOH HOH . I 4 HOH C 33 433 113 HOH HOH . I 4 HOH C 34 434 136 HOH HOH . I 4 HOH C 35 435 27 HOH HOH . I 4 HOH C 36 436 32 HOH HOH . I 4 HOH C 37 437 23 HOH HOH . I 4 HOH C 38 438 140 HOH HOH . I 4 HOH C 39 439 65 HOH HOH . I 4 HOH C 40 440 7 HOH HOH . I 4 HOH C 41 441 159 HOH HOH . I 4 HOH C 42 442 73 HOH HOH . I 4 HOH C 43 443 58 HOH HOH . I 4 HOH C 44 444 91 HOH HOH . I 4 HOH C 45 445 8 HOH HOH . I 4 HOH C 46 446 51 HOH HOH . I 4 HOH C 47 447 177 HOH HOH . I 4 HOH C 48 448 49 HOH HOH . I 4 HOH C 49 449 154 HOH HOH . I 4 HOH C 50 450 83 HOH HOH . I 4 HOH C 51 451 34 HOH HOH . I 4 HOH C 52 452 173 HOH HOH . I 4 HOH C 53 453 60 HOH HOH . I 4 HOH C 54 454 96 HOH HOH . I 4 HOH C 55 455 22 HOH HOH . I 4 HOH C 56 456 78 HOH HOH . I 4 HOH C 57 457 38 HOH HOH . I 4 HOH C 58 458 52 HOH HOH . I 4 HOH C 59 459 179 HOH HOH . I 4 HOH C 60 460 126 HOH HOH . I 4 HOH C 61 461 197 HOH HOH . I 4 HOH C 62 462 53 HOH HOH . I 4 HOH C 63 463 149 HOH HOH . I 4 HOH C 64 464 214 HOH HOH . I 4 HOH C 65 465 93 HOH HOH . I 4 HOH C 66 466 128 HOH HOH . I 4 HOH C 67 467 218 HOH HOH . I 4 HOH C 68 468 156 HOH HOH . I 4 HOH C 69 469 144 HOH HOH . I 4 HOH C 70 470 168 HOH HOH . I 4 HOH C 71 471 70 HOH HOH . I 4 HOH C 72 472 188 HOH HOH . I 4 HOH C 73 473 215 HOH HOH . I 4 HOH C 74 474 148 HOH HOH . I 4 HOH C 75 475 95 HOH HOH . I 4 HOH C 76 476 94 HOH HOH . I 4 HOH C 77 477 194 HOH HOH . I 4 HOH C 78 478 133 HOH HOH . I 4 HOH C 79 479 172 HOH HOH . I 4 HOH C 80 480 193 HOH HOH . I 4 HOH C 81 481 79 HOH HOH . I 4 HOH C 82 482 216 HOH HOH . I 4 HOH C 83 483 171 HOH HOH . I 4 HOH C 84 484 189 HOH HOH . I 4 HOH C 85 485 152 HOH HOH . I 4 HOH C 86 486 192 HOH HOH . J 4 HOH D 1 101 143 HOH HOH . J 4 HOH D 2 102 182 HOH HOH . J 4 HOH D 3 103 99 HOH HOH . J 4 HOH D 4 104 161 HOH HOH . J 4 HOH D 5 105 41 HOH HOH . J 4 HOH D 6 106 77 HOH HOH . J 4 HOH D 7 107 145 HOH HOH . J 4 HOH D 8 108 191 HOH HOH . J 4 HOH D 9 109 202 HOH HOH . J 4 HOH D 10 110 80 HOH HOH . J 4 HOH D 11 111 88 HOH HOH . J 4 HOH D 12 112 146 HOH HOH . J 4 HOH D 13 113 196 HOH HOH . J 4 HOH D 14 114 68 HOH HOH . J 4 HOH D 15 115 204 HOH HOH . J 4 HOH D 16 116 100 HOH HOH . J 4 HOH D 17 117 213 HOH HOH . J 4 HOH D 18 118 170 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA MGP . . . E 3 -6.57 -12.397 -17.897 1 46.91 ? PA MGP 301 A 1 HETATM 2 O O1A MGP . . . E 3 -7.269 -11.422 -16.954 1 44.12 ? O1A MGP 301 A 1 HETATM 3 O O2A MGP . . . E 3 -7.587 -13.412 -18.344 1 49.02 ? O2A MGP 301 A 1 HETATM 4 O O3A MGP . . . E 3 -5.287 -13.044 -17.248 1 67.91 ? O3A MGP 301 A 1 HETATM 5 O O5' MGP . . . E 3 -6.084 -11.6 -19.166 1 46.15 ? O5' MGP 301 A 1 HETATM 6 P PB MGP . . . E 3 -4.614 -14.389 -17.733 1 51.59 ? PB MGP 301 A 1 HETATM 7 O O1B MGP . . . E 3 -5.483 -15.142 -18.739 1 49.85 ? O1B MGP 301 A 1 HETATM 8 O O2B MGP . . . E 3 -4.451 -15.246 -16.505 1 49.6 ? O2B MGP 301 A 1 HETATM 9 O O3B MGP . . . E 3 -3.216 -14.12 -18.405 1 84.03 ? O3B MGP 301 A 1 HETATM 10 P PC MGP . . . E 3 -2.281 -12.947 -17.966 1 129.37 ? PC MGP 301 A 1 HETATM 11 O O1C MGP . . . E 3 -2.518 -11.751 -18.859 1 126.33 ? O1C MGP 301 A 1 HETATM 12 O O2C MGP . . . E 3 -0.853 -13.402 -18.095 1 123.94 ? O2C MGP 301 A 1 HETATM 13 O O3C MGP . . . E 3 -2.555 -12.573 -16.519 1 140.51 ? O3C MGP 301 A 1 HETATM 14 C C5' MGP . . . E 3 -5.81 -12.185 -20.396 1 42.34 ? C5' MGP 301 A 1 HETATM 15 C C4' MGP . . . E 3 -6.116 -11.312 -21.598 1 48.82 ? C4' MGP 301 A 1 HETATM 16 O O4' MGP . . . E 3 -7.49 -11.174 -21.861 1 53.15 ? O4' MGP 301 A 1 HETATM 17 C C3' MGP . . . E 3 -5.64 -9.87 -21.423 1 49.1 ? C3' MGP 301 A 1 HETATM 18 O O3' MGP . . . E 3 -4.295 -9.698 -21.618 1 45.57 ? O3' MGP 301 A 1 HETATM 19 C C2' MGP . . . E 3 -6.44 -9.145 -22.381 1 51.6 ? C2' MGP 301 A 1 HETATM 20 O O2' MGP . . . E 3 -6.044 -9.397 -23.669 1 40.41 ? O2' MGP 301 A 1 HETATM 21 C C1' MGP . . . E 3 -7.768 -9.765 -22.104 1 47.83 ? C1' MGP 301 A 1 HETATM 22 N N9 MGP . . . E 3 -8.46 -9.034 -21.046 1 48.66 ? N9 MGP 301 A 1 HETATM 23 C C8 MGP . . . E 3 -8.601 -9.43 -19.617 1 54.27 ? C8 MGP 301 A 1 HETATM 24 N N7 MGP . . . E 3 -9.361 -8.284 -19.034 1 51.25 ? N7 MGP 301 A 1 HETATM 25 C CM7 MGP . . . E 3 -9.759 -8.236 -17.623 1 57.19 ? CM7 MGP 301 A 1 HETATM 26 C C5 MGP . . . E 3 -9.616 -7.344 -20.085 1 47.48 ? C5 MGP 301 A 1 HETATM 27 C C6 MGP . . . E 3 -10.332 -6.029 -20.079 1 47.22 ? C6 MGP 301 A 1 HETATM 28 O O6 MGP . . . E 3 -10.851 -5.555 -19.065 1 39.21 ? O6 MGP 301 A 1 HETATM 29 N N1 MGP . . . E 3 -10.393 -5.321 -21.325 1 42.53 ? N1 MGP 301 A 1 HETATM 30 C C2 MGP . . . E 3 -9.816 -5.783 -22.549 1 44.45 ? C2 MGP 301 A 1 HETATM 31 N N2 MGP . . . E 3 -9.902 -5.025 -23.817 1 40.96 ? N2 MGP 301 A 1 HETATM 32 N N3 MGP . . . E 3 -9.137 -7.063 -22.541 1 49.3 ? N3 MGP 301 A 1 HETATM 33 C C4 MGP . . . E 3 -9.052 -7.802 -21.291 1 49.33 ? C4 MGP 301 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 33 #