data_5BY5 # _model_server_result.job_id hW5Rv7kHIKexEPsm8EUmkg _model_server_result.datetime_utc '2024-12-18 07:54:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5by5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":204}' # _entry.id 5BY5 # _exptl.entry_id 5BY5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 76.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-1,2-PROPANEDIOL _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5BY5 _cell.length_a 72.71 _cell.length_b 72.71 _cell.length_c 52.33 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5BY5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I 1 1 A,B,C,D,E,F,G,H,I 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x,-x+y,-z+2/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 34.886667 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C3 H8 O2' _chem_comp.formula_weight 76.094 _chem_comp.id PGO _chem_comp.mon_nstd_flag . _chem_comp.name S-1,2-PROPANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 PGO sing 237 n n C1 O1 PGO sing 238 n n C1 H11 PGO sing 239 n n C1 H12 PGO sing 240 n n C2 C3 PGO sing 241 n n C2 O2 PGO sing 242 n n C2 H2 PGO sing 243 n n C3 H31 PGO sing 244 n n C3 H32 PGO sing 245 n n C3 H33 PGO sing 246 n n O1 HO1 PGO sing 247 n n O2 HO2 PGO sing 248 n n # _atom_sites.entry_id 5BY5 _atom_sites.fract_transf_matrix[1][1] 0.013753 _atom_sites.fract_transf_matrix[1][2] 0.00794 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015881 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019109 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PGO A 1 201 1 PGO PGO . C 2 PGO A 1 202 1 PGO PGO . D 2 PGO A 1 203 1 PGO PGO . E 2 PGO A 1 204 1 PGO PGO . F 2 PGO A 1 205 1 PGO PGO . G 2 PGO A 1 206 1 PGO PGO . H 2 PGO A 1 207 1 PGO PGO . I 3 HOH A 1 301 9 HOH HOH . I 3 HOH A 2 302 81 HOH HOH . I 3 HOH A 3 303 67 HOH HOH . I 3 HOH A 4 304 69 HOH HOH . I 3 HOH A 5 305 78 HOH HOH . I 3 HOH A 6 306 57 HOH HOH . I 3 HOH A 7 307 74 HOH HOH . I 3 HOH A 8 308 80 HOH HOH . I 3 HOH A 9 309 35 HOH HOH . I 3 HOH A 10 310 100 HOH HOH . I 3 HOH A 11 311 37 HOH HOH . I 3 HOH A 12 312 68 HOH HOH . I 3 HOH A 13 313 4 HOH HOH . I 3 HOH A 14 314 20 HOH HOH . I 3 HOH A 15 315 101 HOH HOH . I 3 HOH A 16 316 70 HOH HOH . I 3 HOH A 17 317 21 HOH HOH . I 3 HOH A 18 318 40 HOH HOH . I 3 HOH A 19 319 86 HOH HOH . I 3 HOH A 20 320 91 HOH HOH . I 3 HOH A 21 321 10 HOH HOH . I 3 HOH A 22 322 71 HOH HOH . I 3 HOH A 23 323 36 HOH HOH . I 3 HOH A 24 324 87 HOH HOH . I 3 HOH A 25 325 97 HOH HOH . I 3 HOH A 26 326 90 HOH HOH . I 3 HOH A 27 327 77 HOH HOH . I 3 HOH A 28 328 2 HOH HOH . I 3 HOH A 29 329 16 HOH HOH . I 3 HOH A 30 330 51 HOH HOH . I 3 HOH A 31 331 34 HOH HOH . I 3 HOH A 32 332 28 HOH HOH . I 3 HOH A 33 333 12 HOH HOH . I 3 HOH A 34 334 7 HOH HOH . I 3 HOH A 35 335 23 HOH HOH . I 3 HOH A 36 336 13 HOH HOH . I 3 HOH A 37 337 76 HOH HOH . I 3 HOH A 38 338 17 HOH HOH . I 3 HOH A 39 339 72 HOH HOH . I 3 HOH A 40 340 19 HOH HOH . I 3 HOH A 41 341 5 HOH HOH . I 3 HOH A 42 342 66 HOH HOH . I 3 HOH A 43 343 33 HOH HOH . I 3 HOH A 44 344 15 HOH HOH . I 3 HOH A 45 345 3 HOH HOH . I 3 HOH A 46 346 95 HOH HOH . I 3 HOH A 47 347 1 HOH HOH . I 3 HOH A 48 348 44 HOH HOH . I 3 HOH A 49 349 38 HOH HOH . I 3 HOH A 50 350 24 HOH HOH . I 3 HOH A 51 351 47 HOH HOH . I 3 HOH A 52 352 42 HOH HOH . I 3 HOH A 53 353 31 HOH HOH . I 3 HOH A 54 354 83 HOH HOH . I 3 HOH A 55 355 108 HOH HOH . I 3 HOH A 56 356 39 HOH HOH . I 3 HOH A 57 357 22 HOH HOH . I 3 HOH A 58 358 6 HOH HOH . I 3 HOH A 59 359 46 HOH HOH . I 3 HOH A 60 360 25 HOH HOH . I 3 HOH A 61 361 52 HOH HOH . I 3 HOH A 62 362 11 HOH HOH . I 3 HOH A 63 363 8 HOH HOH . I 3 HOH A 64 364 60 HOH HOH . I 3 HOH A 65 365 58 HOH HOH . I 3 HOH A 66 366 88 HOH HOH . I 3 HOH A 67 367 27 HOH HOH . I 3 HOH A 68 368 61 HOH HOH . I 3 HOH A 69 369 30 HOH HOH . I 3 HOH A 70 370 82 HOH HOH . I 3 HOH A 71 371 56 HOH HOH . I 3 HOH A 72 372 41 HOH HOH . I 3 HOH A 73 373 53 HOH HOH . I 3 HOH A 74 374 104 HOH HOH . I 3 HOH A 75 375 107 HOH HOH . I 3 HOH A 76 376 26 HOH HOH . I 3 HOH A 77 377 18 HOH HOH . I 3 HOH A 78 378 85 HOH HOH . I 3 HOH A 79 379 29 HOH HOH . I 3 HOH A 80 380 65 HOH HOH . I 3 HOH A 81 381 49 HOH HOH . I 3 HOH A 82 382 64 HOH HOH . I 3 HOH A 83 383 48 HOH HOH . I 3 HOH A 84 384 32 HOH HOH . I 3 HOH A 85 385 43 HOH HOH . I 3 HOH A 86 386 93 HOH HOH . I 3 HOH A 87 387 73 HOH HOH . I 3 HOH A 88 388 79 HOH HOH . I 3 HOH A 89 389 62 HOH HOH . I 3 HOH A 90 390 111 HOH HOH . I 3 HOH A 91 391 14 HOH HOH . I 3 HOH A 92 392 96 HOH HOH . I 3 HOH A 93 393 110 HOH HOH . I 3 HOH A 94 394 45 HOH HOH . I 3 HOH A 95 395 98 HOH HOH . I 3 HOH A 96 396 102 HOH HOH . I 3 HOH A 97 397 92 HOH HOH . I 3 HOH A 98 398 99 HOH HOH . I 3 HOH A 99 399 75 HOH HOH . I 3 HOH A 100 400 54 HOH HOH . I 3 HOH A 101 401 105 HOH HOH . I 3 HOH A 102 402 84 HOH HOH . I 3 HOH A 103 403 106 HOH HOH . I 3 HOH A 104 404 50 HOH HOH . I 3 HOH A 105 405 63 HOH HOH . I 3 HOH A 106 406 59 HOH HOH . I 3 HOH A 107 407 94 HOH HOH . I 3 HOH A 108 408 55 HOH HOH . I 3 HOH A 109 409 109 HOH HOH . I 3 HOH A 110 410 103 HOH HOH . I 3 HOH A 111 411 89 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PGO . . . E 2 -46.429 37.376 -2.117 1 35.11 ? C1 PGO 204 A 1 HETATM 2 C C2 PGO . . . E 2 -45.897 38.749 -1.824 1 50.82 ? C2 PGO 204 A 1 HETATM 3 C C3 PGO . . . E 2 -46.963 39.64 -1.252 1 43.9 ? C3 PGO 204 A 1 HETATM 4 O O1 PGO . . . E 2 -46.65 37.233 -3.471 1 50.43 ? O1 PGO 204 A 1 HETATM 5 O O2 PGO . . . E 2 -45.393 39.319 -2.98 1 52.83 ? O2 PGO 204 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 64 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 5 #