data_5BYB
#
_model_server_result.job_id            jH_YRmLaXd2uRWcJtArOaw 
_model_server_result.datetime_utc      '2024-11-17 04:44:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5byb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":405}' 
#
_entry.id    5BYB 
#
_exptl.entry_id    5BYB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              24.305 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MAGNESIUM ION' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5BYB 
_cell.length_a            88.807 
_cell.length_b            110.411 
_cell.length_c            41.423 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5BYB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
? 4 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O SER 32 A SER 68 1_555 F MG MG . A MG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? 
metalc ? metalc2 A O PHE 34 A PHE 70 1_555 F MG MG . A MG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? 
metalc ? metalc3 A O ILE 37 A ILE 73 1_555 F MG MG . A MG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? 
metalc ? metalc4 A OD2 ASP 273 A ASP 309 1_555 E MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? 
metalc ? metalc5 A OD1 ASP 285 A ASP 321 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? 
metalc ? metalc6 A OD2 ASP 285 A ASP 321 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? 
metalc ? metalc7 A OD2 ASP 285 A ASP 321 1_555 E MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? 
metalc ? metalc8 A OD1 ASN 287 A ASN 323 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? 
metalc ? metalc9 B O1B ADP . A ADP 401 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? 
metalc ? metalc10 B O3B ADP . A ADP 401 1_555 E MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? 
metalc ? metalc11 B O2A ADP . A ADP 401 1_555 E MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? 
metalc ? metalc12 D MG MG . A MG 403 1_555 N O HOH . A HOH 583 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? 
metalc ? metalc13 E MG MG . A MG 404 1_555 N O HOH . A HOH 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? 
metalc ? metalc14 E MG MG . A MG 404 1_555 N O HOH . A HOH 645 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? 
metalc ? metalc15 F MG MG . A MG 405 1_555 N O HOH . A HOH 664 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? 
metalc ? metalc16 F MG MG . A MG 405 1_555 N O HOH . A HOH 684 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.663 ? 
#
_chem_comp.formula           'Mg 2' 
_chem_comp.formula_weight    24.305 
_chem_comp.id                MG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MAGNESIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5BYB 
_atom_sites.fract_transf_matrix[1][1]    0.01126 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009057 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.024141 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ADP A 1 401 401 ADP ADP . 
C 3 4WY A 1 402 501 4WY PA8 . 
D 4 MG A 1 403 601 MG MG . 
E 4 MG A 1 404 602 MG MG . 
F 4 MG A 1 405 603 MG MG . 
G 5 ACT A 1 406 801 ACT ACT . 
H 5 ACT A 1 407 802 ACT ACT . 
I 5 ACT A 1 408 803 ACT ACT . 
J 6 EDO A 1 409 804 EDO EDO . 
K 6 EDO A 1 410 805 EDO EDO . 
L 6 EDO A 1 411 806 EDO EDO . 
M 6 EDO A 1 412 807 EDO EDO . 
N 7 HOH A 1 501 176 HOH HOH . 
N 7 HOH A 2 502 164 HOH HOH . 
N 7 HOH A 3 503 43 HOH HOH . 
N 7 HOH A 4 504 217 HOH HOH . 
N 7 HOH A 5 505 20 HOH HOH . 
N 7 HOH A 6 506 41 HOH HOH . 
N 7 HOH A 7 507 75 HOH HOH . 
N 7 HOH A 8 508 51 HOH HOH . 
N 7 HOH A 9 509 115 HOH HOH . 
N 7 HOH A 10 510 136 HOH HOH . 
N 7 HOH A 11 511 70 HOH HOH . 
N 7 HOH A 12 512 3 HOH HOH . 
N 7 HOH A 13 513 40 HOH HOH . 
N 7 HOH A 14 514 142 HOH HOH . 
N 7 HOH A 15 515 140 HOH HOH . 
N 7 HOH A 16 516 65 HOH HOH . 
N 7 HOH A 17 517 26 HOH HOH . 
N 7 HOH A 18 518 29 HOH HOH . 
N 7 HOH A 19 519 54 HOH HOH . 
N 7 HOH A 20 520 81 HOH HOH . 
N 7 HOH A 21 521 96 HOH HOH . 
N 7 HOH A 22 522 183 HOH HOH . 
N 7 HOH A 23 523 83 HOH HOH . 
N 7 HOH A 24 524 109 HOH HOH . 
N 7 HOH A 25 525 155 HOH HOH . 
N 7 HOH A 26 526 88 HOH HOH . 
N 7 HOH A 27 527 62 HOH HOH . 
N 7 HOH A 28 528 48 HOH HOH . 
N 7 HOH A 29 529 106 HOH HOH . 
N 7 HOH A 30 530 178 HOH HOH . 
N 7 HOH A 31 531 195 HOH HOH . 
N 7 HOH A 32 532 87 HOH HOH . 
N 7 HOH A 33 533 209 HOH HOH . 
N 7 HOH A 34 534 193 HOH HOH . 
N 7 HOH A 35 535 60 HOH HOH . 
N 7 HOH A 36 536 11 HOH HOH . 
N 7 HOH A 37 537 101 HOH HOH . 
N 7 HOH A 38 538 122 HOH HOH . 
N 7 HOH A 39 539 42 HOH HOH . 
N 7 HOH A 40 540 39 HOH HOH . 
N 7 HOH A 41 541 45 HOH HOH . 
N 7 HOH A 42 542 102 HOH HOH . 
N 7 HOH A 43 543 10 HOH HOH . 
N 7 HOH A 44 544 201 HOH HOH . 
N 7 HOH A 45 545 71 HOH HOH . 
N 7 HOH A 46 546 179 HOH HOH . 
N 7 HOH A 47 547 127 HOH HOH . 
N 7 HOH A 48 548 110 HOH HOH . 
N 7 HOH A 49 549 58 HOH HOH . 
N 7 HOH A 50 550 27 HOH HOH . 
N 7 HOH A 51 551 82 HOH HOH . 
N 7 HOH A 52 552 18 HOH HOH . 
N 7 HOH A 53 553 15 HOH HOH . 
N 7 HOH A 54 554 94 HOH HOH . 
N 7 HOH A 55 555 210 HOH HOH . 
N 7 HOH A 56 556 131 HOH HOH . 
N 7 HOH A 57 557 174 HOH HOH . 
N 7 HOH A 58 558 135 HOH HOH . 
N 7 HOH A 59 559 91 HOH HOH . 
N 7 HOH A 60 560 196 HOH HOH . 
N 7 HOH A 61 561 25 HOH HOH . 
N 7 HOH A 62 562 99 HOH HOH . 
N 7 HOH A 63 563 77 HOH HOH . 
N 7 HOH A 64 564 12 HOH HOH . 
N 7 HOH A 65 565 5 HOH HOH . 
N 7 HOH A 66 566 139 HOH HOH . 
N 7 HOH A 67 567 46 HOH HOH . 
N 7 HOH A 68 568 36 HOH HOH . 
N 7 HOH A 69 569 98 HOH HOH . 
N 7 HOH A 70 570 57 HOH HOH . 
N 7 HOH A 71 571 76 HOH HOH . 
N 7 HOH A 72 572 111 HOH HOH . 
N 7 HOH A 73 573 78 HOH HOH . 
N 7 HOH A 74 574 4 HOH HOH . 
N 7 HOH A 75 575 161 HOH HOH . 
N 7 HOH A 76 576 66 HOH HOH . 
N 7 HOH A 77 577 69 HOH HOH . 
N 7 HOH A 78 578 100 HOH HOH . 
N 7 HOH A 79 579 61 HOH HOH . 
N 7 HOH A 80 580 215 HOH HOH . 
N 7 HOH A 81 581 72 HOH HOH . 
N 7 HOH A 82 582 134 HOH HOH . 
N 7 HOH A 83 583 156 HOH HOH . 
N 7 HOH A 84 584 16 HOH HOH . 
N 7 HOH A 85 585 31 HOH HOH . 
N 7 HOH A 86 586 112 HOH HOH . 
N 7 HOH A 87 587 117 HOH HOH . 
N 7 HOH A 88 588 107 HOH HOH . 
N 7 HOH A 89 589 17 HOH HOH . 
N 7 HOH A 90 590 165 HOH HOH . 
N 7 HOH A 91 591 23 HOH HOH . 
N 7 HOH A 92 592 49 HOH HOH . 
N 7 HOH A 93 593 92 HOH HOH . 
N 7 HOH A 94 594 24 HOH HOH . 
N 7 HOH A 95 595 108 HOH HOH . 
N 7 HOH A 96 596 130 HOH HOH . 
N 7 HOH A 97 597 214 HOH HOH . 
N 7 HOH A 98 598 120 HOH HOH . 
N 7 HOH A 99 599 2 HOH HOH . 
N 7 HOH A 100 600 74 HOH HOH . 
N 7 HOH A 101 601 144 HOH HOH . 
N 7 HOH A 102 602 198 HOH HOH . 
N 7 HOH A 103 603 132 HOH HOH . 
N 7 HOH A 104 604 35 HOH HOH . 
N 7 HOH A 105 605 30 HOH HOH . 
N 7 HOH A 106 606 118 HOH HOH . 
N 7 HOH A 107 607 19 HOH HOH . 
N 7 HOH A 108 608 123 HOH HOH . 
N 7 HOH A 109 609 114 HOH HOH . 
N 7 HOH A 110 610 213 HOH HOH . 
N 7 HOH A 111 611 157 HOH HOH . 
N 7 HOH A 112 612 211 HOH HOH . 
N 7 HOH A 113 613 167 HOH HOH . 
N 7 HOH A 114 614 80 HOH HOH . 
N 7 HOH A 115 615 79 HOH HOH . 
N 7 HOH A 116 616 147 HOH HOH . 
N 7 HOH A 117 617 143 HOH HOH . 
N 7 HOH A 118 618 158 HOH HOH . 
N 7 HOH A 119 619 22 HOH HOH . 
N 7 HOH A 120 620 93 HOH HOH . 
N 7 HOH A 121 621 84 HOH HOH . 
N 7 HOH A 122 622 34 HOH HOH . 
N 7 HOH A 123 623 125 HOH HOH . 
N 7 HOH A 124 624 166 HOH HOH . 
N 7 HOH A 125 625 194 HOH HOH . 
N 7 HOH A 126 626 90 HOH HOH . 
N 7 HOH A 127 627 68 HOH HOH . 
N 7 HOH A 128 628 47 HOH HOH . 
N 7 HOH A 129 629 64 HOH HOH . 
N 7 HOH A 130 630 50 HOH HOH . 
N 7 HOH A 131 631 52 HOH HOH . 
N 7 HOH A 132 632 197 HOH HOH . 
N 7 HOH A 133 633 44 HOH HOH . 
N 7 HOH A 134 634 9 HOH HOH . 
N 7 HOH A 135 635 6 HOH HOH . 
N 7 HOH A 136 636 154 HOH HOH . 
N 7 HOH A 137 637 186 HOH HOH . 
N 7 HOH A 138 638 53 HOH HOH . 
N 7 HOH A 139 639 121 HOH HOH . 
N 7 HOH A 140 640 191 HOH HOH . 
N 7 HOH A 141 641 8 HOH HOH . 
N 7 HOH A 142 642 188 HOH HOH . 
N 7 HOH A 143 643 187 HOH HOH . 
N 7 HOH A 144 644 32 HOH HOH . 
N 7 HOH A 145 645 216 HOH HOH . 
N 7 HOH A 146 646 126 HOH HOH . 
N 7 HOH A 147 647 116 HOH HOH . 
N 7 HOH A 148 648 63 HOH HOH . 
N 7 HOH A 149 649 55 HOH HOH . 
N 7 HOH A 150 650 137 HOH HOH . 
N 7 HOH A 151 651 207 HOH HOH . 
N 7 HOH A 152 652 160 HOH HOH . 
N 7 HOH A 153 653 138 HOH HOH . 
N 7 HOH A 154 654 162 HOH HOH . 
N 7 HOH A 155 655 56 HOH HOH . 
N 7 HOH A 156 656 113 HOH HOH . 
N 7 HOH A 157 657 97 HOH HOH . 
N 7 HOH A 158 658 95 HOH HOH . 
N 7 HOH A 159 659 184 HOH HOH . 
N 7 HOH A 160 660 89 HOH HOH . 
N 7 HOH A 161 661 85 HOH HOH . 
N 7 HOH A 162 662 150 HOH HOH . 
N 7 HOH A 163 663 173 HOH HOH . 
N 7 HOH A 164 664 59 HOH HOH . 
N 7 HOH A 165 665 212 HOH HOH . 
N 7 HOH A 166 666 182 HOH HOH . 
N 7 HOH A 167 667 208 HOH HOH . 
N 7 HOH A 168 668 163 HOH HOH . 
N 7 HOH A 169 669 28 HOH HOH . 
N 7 HOH A 170 670 13 HOH HOH . 
N 7 HOH A 171 671 105 HOH HOH . 
N 7 HOH A 172 672 33 HOH HOH . 
N 7 HOH A 173 673 7 HOH HOH . 
N 7 HOH A 174 674 168 HOH HOH . 
N 7 HOH A 175 675 73 HOH HOH . 
N 7 HOH A 176 676 14 HOH HOH . 
N 7 HOH A 177 677 37 HOH HOH . 
N 7 HOH A 178 678 189 HOH HOH . 
N 7 HOH A 179 679 180 HOH HOH . 
N 7 HOH A 180 680 86 HOH HOH . 
N 7 HOH A 181 681 172 HOH HOH . 
N 7 HOH A 182 682 1 HOH HOH . 
N 7 HOH A 183 683 38 HOH HOH . 
N 7 HOH A 184 684 159 HOH HOH . 
N 7 HOH A 185 685 21 HOH HOH . 
N 7 HOH A 186 686 104 HOH HOH . 
N 7 HOH A 187 687 133 HOH HOH . 
N 7 HOH A 188 688 129 HOH HOH . 
N 7 HOH A 189 689 103 HOH HOH . 
N 7 HOH A 190 690 200 HOH HOH . 
N 7 HOH A 191 691 181 HOH HOH . 
N 7 HOH A 192 692 149 HOH HOH . 
N 7 HOH A 193 693 199 HOH HOH . 
N 7 HOH A 194 694 177 HOH HOH . 
N 7 HOH A 195 695 171 HOH HOH . 
N 7 HOH A 196 696 119 HOH HOH . 
N 7 HOH A 197 697 152 HOH HOH . 
N 7 HOH A 198 698 145 HOH HOH . 
N 7 HOH A 199 699 141 HOH HOH . 
N 7 HOH A 200 700 128 HOH HOH . 
N 7 HOH A 201 701 185 HOH HOH . 
N 7 HOH A 202 702 192 HOH HOH . 
N 7 HOH A 203 703 153 HOH HOH . 
N 7 HOH A 204 704 190 HOH HOH . 
N 7 HOH A 205 705 148 HOH HOH . 
N 7 HOH A 206 706 146 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MG 
_atom_site.label_atom_id         MG 
_atom_site.label_comp_id         MG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         F 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               -6.465 
_atom_site.Cartn_y               40.879 
_atom_site.Cartn_z               -7.611 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        21.8 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MG 
_atom_site.auth_comp_id          MG 
_atom_site.auth_seq_id           405 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           288 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           1 
#